Wall clock time and date at job start Tue Mar 31 2020 07:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47089 * 2 1 4 4 C 1.50693 * 109.46997 * 120.00023 * 2 1 3 5 5 H 1.08000 * 120.00302 * 114.36344 * 4 2 1 6 6 C 1.37886 * 120.00163 * 294.36365 * 4 2 1 7 7 N 1.31511 * 119.99772 * 156.60071 * 6 4 2 8 8 Si 1.86801 * 119.99628 * 336.87625 * 6 4 2 9 9 H 1.48498 * 109.46677 * 179.72810 * 8 6 4 10 10 H 1.48500 * 109.47133 * 299.72373 * 8 6 4 11 11 H 1.48495 * 109.47357 * 59.72138 * 8 6 4 12 12 O 1.45200 * 109.47139 * 240.00135 * 2 1 3 13 13 C 1.34231 * 117.00204 * 89.99914 * 12 2 1 14 14 O 1.20821 * 119.99993 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99878 * 179.97438 * 13 12 2 16 16 N 1.46499 * 109.46750 * 180.02562 * 15 13 12 17 17 C 1.34777 * 119.99697 * 180.02562 * 16 15 13 18 18 O 1.21570 * 120.00341 * 0.02562 * 17 16 15 19 19 C 1.47727 * 119.99968 * 180.02562 * 17 16 15 20 20 C 1.39649 * 120.11547 * 359.72643 * 19 17 16 21 21 C 1.37847 * 119.87300 * 179.74337 * 20 19 17 22 22 C 1.38646 * 120.11965 * 0.50955 * 21 20 19 23 23 F 1.35103 * 119.87941 * 179.74866 * 22 21 20 24 24 C 1.38657 * 120.24303 * 359.76039 * 22 21 20 25 25 C 1.37832 * 120.11690 * 359.97438 * 24 22 21 26 26 H 1.08994 * 109.47507 * 173.10845 * 1 2 3 27 27 H 1.09003 * 109.46967 * 293.11361 * 1 2 3 28 28 H 1.09007 * 109.46955 * 53.10589 * 1 2 3 29 29 H 0.96991 * 120.00582 * 355.20986 * 7 6 4 30 30 H 1.08999 * 109.47289 * 300.00569 * 15 13 12 31 31 H 1.08997 * 109.46869 * 60.00510 * 15 13 12 32 32 H 0.97001 * 120.00297 * 0.02562 * 16 15 13 33 33 H 1.07998 * 120.06361 * 359.97400 * 20 19 17 34 34 H 1.07997 * 119.93328 * 180.25508 * 21 20 19 35 35 H 1.07997 * 119.94097 * 179.97438 * 24 22 21 36 36 H 1.08001 * 120.06179 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5760 -1.6385 1.1340 6 6 1.7977 -0.1755 2.4794 7 7 1.8023 -0.9538 3.5395 8 14 1.4656 1.6534 2.6648 9 1 1.2397 1.9727 4.0973 10 1 2.6338 2.4218 2.1647 11 1 0.2595 2.0196 1.8797 12 8 2.0140 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2812 14 8 1.9982 1.2518 -2.2504 15 6 2.7193 -0.5770 -3.5492 16 7 2.8582 0.4439 -4.5906 17 6 3.2951 0.0992 -5.8181 18 8 3.5734 -1.0589 -6.0613 19 6 3.4357 1.1288 -6.8681 20 6 3.1113 2.4589 -6.5931 21 6 3.2494 3.4165 -7.5751 22 6 3.6994 3.0592 -8.8369 23 9 3.8282 4.0008 -9.7971 24 6 4.0176 1.7390 -9.1169 25 6 3.8884 0.7744 -8.1409 26 1 -0.3634 -1.0202 -0.1233 27 1 -0.3633 0.4034 0.9452 28 1 -0.3633 0.6170 -0.8219 29 1 1.9014 -1.9131 3.4365 30 1 3.6884 -1.0401 -3.3631 31 1 2.0105 -1.3372 -3.8773 32 1 2.6358 1.3680 -4.3967 33 1 2.7563 2.7375 -5.6119 34 1 3.0027 4.4461 -7.3623 35 1 4.3673 1.4660 -10.1016 36 1 4.1361 -0.2537 -8.3601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343464443.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:42 Heat of formation + Delta-G solvation = -164.174814 kcal Electronic energy + Delta-G solvation = -22337.874079 eV Core-core repulsion = 18507.849513 eV Total energy + Delta-G solvation = -3830.024566 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.03113 -41.81369 -41.06278 -39.21279 -37.92404 -35.80963 -35.40356 -32.66301 -32.25984 -32.00964 -29.23447 -27.03390 -24.93283 -24.08198 -23.36416 -21.74923 -21.58084 -20.05003 -19.54097 -18.72550 -18.29097 -17.76211 -17.51362 -16.97556 -16.72170 -16.57829 -16.21971 -15.97891 -15.57316 -15.06142 -14.91043 -14.70531 -14.59725 -14.39283 -14.23813 -13.90021 -13.80435 -13.54434 -13.29804 -13.21398 -12.51572 -12.15814 -12.10313 -11.91190 -11.66358 -11.60857 -11.33906 -11.11146 -10.54076 -10.48800 -10.24861 -9.86078 -8.95540 -6.54675 -0.45268 0.14901 1.06303 1.37520 1.43194 1.47995 1.58309 1.68828 2.21578 2.38249 2.61764 2.85187 3.08295 3.45973 3.60115 3.68397 3.81549 4.13483 4.15981 4.19306 4.23773 4.28298 4.52068 4.60123 4.70614 4.80938 4.85149 4.98254 4.98912 5.07463 5.16615 5.29091 5.41250 5.69529 5.79063 5.91921 6.25123 6.35613 6.72078 6.93615 7.19741 8.44872 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.030263 B = 0.002766 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.007873 B =10120.256290 C =10783.450894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.198 3.802 3 H 0.037 0.963 4 C -0.630 4.630 5 H 0.032 0.968 6 C 0.004 3.996 7 N -0.910 5.910 8 Si 1.068 2.932 9 H -0.275 1.275 10 H -0.267 1.267 11 H -0.243 1.243 12 O -0.354 6.354 13 C 0.451 3.549 14 O -0.534 6.534 15 C 0.135 3.865 16 N -0.711 5.711 17 C 0.567 3.433 18 O -0.566 6.566 19 C -0.159 4.159 20 C -0.052 4.052 21 C -0.158 4.158 22 C 0.117 3.883 23 F -0.138 7.138 24 C -0.158 4.158 25 C -0.033 4.033 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.261 0.739 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.417 0.583 33 H 0.153 0.847 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.755 9.140 -24.964 26.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.144 3.856 3 H 0.055 0.945 4 C -0.667 4.667 5 H 0.051 0.949 6 C -0.198 4.198 7 N -0.543 5.543 8 Si 0.888 3.112 9 H -0.200 1.200 10 H -0.192 1.192 11 H -0.167 1.167 12 O -0.269 6.269 13 C 0.295 3.705 14 O -0.424 6.424 15 C 0.010 3.990 16 N -0.367 5.367 17 C 0.356 3.644 18 O -0.446 6.446 19 C -0.162 4.162 20 C -0.070 4.070 21 C -0.176 4.176 22 C 0.098 3.902 23 F -0.117 7.117 24 C -0.176 4.176 25 C -0.052 4.052 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.257 0.743 33 H 0.171 0.829 34 H 0.182 0.818 35 H 0.182 0.818 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.597 9.846 -23.933 25.928 hybrid contribution 0.351 -1.138 -0.644 1.354 sum 1.948 8.708 -24.577 26.147 Atomic orbital electron populations 1.22390 0.95899 1.01691 1.01685 1.20703 0.92361 0.93160 0.79399 0.94506 1.21978 1.42245 1.10690 0.91752 0.94940 1.27002 0.92277 1.09590 0.90934 1.70956 1.44622 1.06237 1.32479 0.83767 0.79330 0.70616 0.77518 1.20034 1.19174 1.16748 1.86526 1.75927 1.43356 1.21060 1.23887 0.74162 0.85884 0.86524 1.90563 1.49835 1.17342 1.84705 1.20658 1.05084 0.91161 0.82108 1.45635 1.67782 1.12953 1.10344 1.18382 0.76058 0.88178 0.81740 1.90792 1.51415 1.20841 1.81540 1.19861 1.07778 0.93693 0.94890 1.21410 0.94769 0.90687 1.00172 1.21340 1.02551 1.02361 0.91380 1.18190 0.99226 0.86420 0.86368 1.91528 1.93286 1.64215 1.62656 1.21335 1.03497 0.90661 1.02131 1.21227 0.92954 1.00757 0.90274 0.92529 0.91464 0.92598 0.92941 0.86108 0.85529 0.74262 0.82898 0.81848 0.81799 0.83280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.70 9.27 71.98 0.67 -6.03 16 2 C 0.20 9.43 2.15 29.85 0.06 9.50 16 3 H 0.04 1.78 5.73 -2.38 -0.01 1.76 16 4 C -0.63 -35.53 9.11 25.60 0.23 -35.29 16 5 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 6 C 0.00 0.22 5.19 84.66 0.44 0.66 16 7 N -0.91 -54.52 13.70 21.45 0.29 -54.22 16 8 Si 1.07 47.43 26.44 68.60 1.81 49.25 16 9 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.24 -9.59 6.15 99.48 0.61 -8.98 16 12 O -0.35 -15.12 9.86 -51.42 -0.51 -15.63 16 13 C 0.45 15.53 8.00 71.24 0.57 16.09 16 14 O -0.53 -19.51 14.89 21.98 0.33 -19.18 16 15 C 0.13 3.45 6.27 85.63 0.54 3.99 16 16 N -0.71 -16.05 5.48 -469.82 -2.57 -18.62 16 17 C 0.57 13.19 7.77 86.75 0.67 13.87 16 18 O -0.57 -16.57 16.34 -3.94 -0.06 -16.64 16 19 C -0.16 -2.87 5.87 -20.09 -0.12 -2.99 16 20 C -0.05 -0.73 9.54 22.52 0.21 -0.51 16 21 C -0.16 -1.98 10.01 22.27 0.22 -1.76 16 22 C 0.12 1.65 7.31 22.47 0.16 1.81 16 23 F -0.14 -2.12 17.26 44.97 0.78 -1.35 16 24 C -0.16 -2.03 10.01 22.27 0.22 -1.81 16 25 C -0.03 -0.53 9.59 22.52 0.22 -0.31 16 26 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.07 2.85 5.48 -2.39 -0.01 2.84 16 28 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.26 15.84 8.73 -92.71 -0.81 15.03 16 30 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.42 8.48 5.47 -92.71 -0.51 7.98 16 33 H 0.15 1.71 6.40 -2.91 -0.02 1.69 16 34 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 36 H 0.15 2.29 7.65 -2.91 -0.02 2.27 16 Total: -1.00 -68.32 320.61 4.67 -63.65 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.49 Total: 15.52 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 4.11 Total: -2.78 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -2.28 Total: -72.84 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -0.24 Total: -51.45 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.78 Total: -1.35 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.81 Total: 49.25 kcal Total: -68.32 4.67 -63.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343464443.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.526 kcal (2) G-P(sol) polarization free energy of solvation -68.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds