Wall clock time and date at job start Tue Mar 31 2020 07:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47202 * 2 1 4 4 C 1.50696 * 109.46908 * 239.99922 * 2 1 3 5 5 H 1.07996 * 120.00258 * 239.99831 * 4 2 1 6 6 C 1.37880 * 120.00074 * 60.00448 * 4 2 1 7 7 N 1.31521 * 119.99949 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00158 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46899 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47127 * 119.99920 * 8 6 4 11 11 H 1.48495 * 109.46810 * 239.99849 * 8 6 4 12 12 N 1.46499 * 109.46868 * 120.00366 * 2 1 3 13 13 C 1.46499 * 120.00225 * 59.99572 * 12 2 1 14 14 C 1.34780 * 119.99546 * 240.00135 * 12 2 1 15 15 O 1.21606 * 120.00181 * 359.97438 * 14 12 2 16 16 C 1.47399 * 119.99523 * 180.02562 * 14 12 2 17 17 C 1.40078 * 120.17159 * 269.99331 * 16 14 12 18 18 C 1.39125 * 119.71230 * 180.02562 * 17 16 14 19 19 C 1.38538 * 119.97561 * 359.97438 * 18 17 16 20 20 C 1.38389 * 120.42865 * 359.97438 * 19 18 17 21 21 C 1.38102 * 120.32810 * 359.72769 * 20 19 18 22 22 F 1.35094 * 120.05282 * 180.27401 * 21 20 19 23 23 O 1.36604 * 108.59491 * 180.02562 * 18 17 16 24 24 C 1.43992 * 105.43427 * 342.74112 * 23 18 17 25 25 O 1.36223 * 131.53308 * 0.03079 * 17 16 14 26 26 H 1.09002 * 109.46830 * 59.99794 * 1 2 3 27 27 H 1.08993 * 109.47519 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47040 * 300.00243 * 1 2 3 29 29 H 0.96995 * 120.00084 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47391 * 270.00005 * 13 12 2 31 31 H 1.09001 * 109.46813 * 150.00061 * 13 12 2 32 32 H 1.09004 * 109.47041 * 30.00189 * 13 12 2 33 33 H 1.08002 * 119.78347 * 179.97438 * 19 18 17 34 34 H 1.08001 * 119.83892 * 180.02562 * 20 19 18 35 35 H 1.08992 * 110.58020 * 268.51681 * 24 23 18 36 36 H 1.08999 * 110.58066 * 145.62094 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1483 -2.2857 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8160 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0932 1.4280 14 6 2.7932 -0.0357 2.0833 15 8 3.0873 1.1285 1.8907 16 6 3.2849 -0.7308 3.2865 17 6 2.5310 -0.7135 4.4670 18 6 3.0045 -1.3724 5.5972 19 6 4.2165 -2.0419 5.5513 20 6 4.9627 -2.0614 4.3860 21 6 4.5042 -1.4176 3.2535 22 9 5.2346 -1.4449 2.1173 23 8 2.0988 -1.2109 6.6070 24 6 1.2669 -0.1073 6.2028 25 8 1.3322 -0.1394 4.7649 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7088 1.1614 -3.4843 30 1 0.7375 -2.1444 1.9993 31 1 2.4628 -2.5819 1.9863 32 1 1.5294 -2.5969 0.4707 33 1 4.5813 -2.5520 6.4306 34 1 5.9061 -2.5866 4.3607 35 1 1.6662 0.8328 6.5830 36 1 0.2421 -0.2551 6.5434 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350039184.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:22 Heat of formation + Delta-G solvation = -100.928845 kcal Electronic energy + Delta-G solvation = -24360.805437 eV Core-core repulsion = 20533.523422 eV Total energy + Delta-G solvation = -3827.282015 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.90346 -42.38960 -39.22559 -37.40515 -36.44444 -35.33320 -32.89335 -31.18668 -29.86624 -29.12004 -26.17187 -26.00604 -25.22042 -24.21306 -23.10359 -21.31149 -19.13078 -18.67472 -17.92116 -17.65781 -16.91829 -16.46582 -16.22987 -15.61070 -15.47546 -15.32432 -14.99612 -14.49321 -14.25725 -14.15972 -13.44352 -13.15358 -13.10075 -12.87249 -12.76456 -12.49230 -12.14933 -11.79773 -11.66083 -11.50521 -11.05437 -10.90778 -10.81908 -10.71071 -10.24311 -10.16794 -9.29264 -9.16942 -8.91807 -8.42237 -8.23161 -7.64206 -6.06362 -4.14201 0.73405 0.80029 2.44612 3.09973 3.14037 3.16083 3.27757 3.35695 3.39409 3.75400 4.16161 4.29799 4.41262 4.49366 4.68950 4.70298 4.89640 4.96406 5.14375 5.25176 5.62637 5.66720 5.74360 5.78909 5.84348 6.05467 6.21373 6.36230 6.75927 6.82605 6.85436 7.06065 7.37199 7.50588 7.71414 8.00763 8.18104 8.44997 8.77669 8.95715 9.51829 10.99219 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.004946 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.947600 B = 5659.830959 C = 6361.562751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.576 5.576 13 C 0.085 3.915 14 C 0.553 3.447 15 O -0.535 6.535 16 C -0.126 4.126 17 C 0.094 3.906 18 C 0.017 3.983 19 C -0.065 4.065 20 C -0.146 4.146 21 C 0.142 3.858 22 F -0.115 7.115 23 O -0.305 6.305 24 C 0.212 3.788 25 O -0.292 6.292 26 H 0.095 0.905 27 H 0.030 0.970 28 H 0.012 0.988 29 H 0.263 0.737 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.088 0.912 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.009 -7.156 17.912 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.305 5.305 13 C -0.059 4.059 14 C 0.337 3.663 15 O -0.413 6.413 16 C -0.131 4.131 17 C 0.048 3.952 18 C -0.027 4.027 19 C -0.084 4.084 20 C -0.165 4.165 21 C 0.122 3.878 22 F -0.093 7.093 23 O -0.222 6.222 24 C 0.100 3.900 25 O -0.207 6.207 26 H 0.113 0.887 27 H 0.049 0.951 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.166 0.834 34 H 0.173 0.827 35 H 0.106 0.894 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.843 -6.445 17.645 18.999 hybrid contribution 0.177 -0.396 -0.896 0.996 sum 3.020 -6.842 16.749 18.343 Atomic orbital electron populations 1.22075 0.97866 0.99529 1.00903 1.19040 0.91100 0.94554 0.79563 0.91781 1.21340 1.31806 1.13083 0.90127 0.92031 1.24894 0.94904 0.94982 0.98974 1.69893 1.36371 1.22624 1.23686 0.86414 0.78587 0.79619 0.82644 1.19736 1.20932 1.20876 1.48225 1.47654 1.11724 1.22931 1.21607 0.98814 0.83009 1.02492 1.17677 0.79992 0.86498 0.82106 1.90781 1.58329 1.16158 1.76026 1.19122 0.94867 1.04045 0.95112 1.19227 0.85712 0.96503 0.93744 1.19649 0.93322 1.02884 0.86873 1.19852 0.89827 0.99738 0.98942 1.20790 1.02200 1.02907 0.90628 1.17096 0.89225 0.97996 0.83531 1.91606 1.75298 1.94380 1.48049 1.87388 1.42551 1.51339 1.40881 1.25746 0.97652 0.89863 0.76720 1.87438 1.32059 1.77709 1.23520 0.88684 0.95068 0.96907 0.92714 0.93633 0.93232 0.89574 0.83438 0.82696 0.89418 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.97 37.16 0.33 -3.26 16 2 C 0.26 6.83 2.64 -69.08 -0.18 6.64 16 3 H 0.06 1.96 6.90 -51.93 -0.36 1.60 16 4 C -0.52 -14.50 7.99 -34.44 -0.28 -14.77 16 5 H 0.06 1.68 7.33 -52.49 -0.38 1.30 16 6 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.40 11.32 55.43 0.63 -24.78 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.58 -13.26 2.75 -176.54 -0.49 -13.75 16 13 C 0.08 1.58 9.25 59.85 0.55 2.13 16 14 C 0.55 12.72 6.73 -12.53 -0.08 12.64 16 15 O -0.53 -14.36 16.43 5.27 0.09 -14.27 16 16 C -0.13 -2.28 3.94 -104.82 -0.41 -2.70 16 17 C 0.09 1.49 6.90 -38.56 -0.27 1.23 16 18 C 0.02 0.22 7.14 -39.14 -0.28 -0.06 16 19 C -0.06 -0.65 10.04 -39.42 -0.40 -1.05 16 20 C -0.15 -1.59 10.00 -39.58 -0.40 -1.99 16 21 C 0.14 2.20 6.83 -38.98 -0.27 1.93 16 22 F -0.12 -2.02 16.83 2.25 0.04 -1.98 16 23 O -0.31 -3.51 11.41 -46.03 -0.53 -4.03 16 24 C 0.21 2.13 8.89 101.05 0.90 3.03 16 25 O -0.29 -4.50 11.39 -44.79 -0.51 -5.01 16 26 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 27 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 28 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.81 6.53 -51.93 -0.34 0.47 16 32 H 0.09 1.64 7.02 -51.93 -0.36 1.27 16 33 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.14 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 314.12 15.07 4.73 4.73 Total: -1.00 -33.79 314.12 -5.75 -39.55 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -3.83 Total: -2.22 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -0.87 Total: 5.48 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.14 Total: -38.53 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.95 Total: -23.32 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.79 -5.75 -39.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350039184.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.382 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds