Wall clock time and date at job start Tue Mar 31 2020 07:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47202 * 2 1 4 4 C 1.50696 * 109.46908 * 239.99922 * 2 1 3 5 5 H 1.07996 * 120.00258 * 239.99831 * 4 2 1 6 6 C 1.37880 * 120.00074 * 60.00448 * 4 2 1 7 7 N 1.31521 * 119.99949 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00158 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46899 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47127 * 119.99920 * 8 6 4 11 11 H 1.48495 * 109.46810 * 239.99849 * 8 6 4 12 12 N 1.46499 * 109.46868 * 120.00366 * 2 1 3 13 13 C 1.46499 * 120.00225 * 59.99572 * 12 2 1 14 14 C 1.34780 * 119.99546 * 240.00135 * 12 2 1 15 15 O 1.21606 * 120.00181 * 359.97438 * 14 12 2 16 16 C 1.47399 * 119.99523 * 180.02562 * 14 12 2 17 17 C 1.40078 * 120.17159 * 269.99331 * 16 14 12 18 18 C 1.39125 * 119.71230 * 180.02562 * 17 16 14 19 19 C 1.38538 * 119.97561 * 359.97438 * 18 17 16 20 20 C 1.38389 * 120.42865 * 359.97438 * 19 18 17 21 21 C 1.38102 * 120.32810 * 359.72769 * 20 19 18 22 22 F 1.35094 * 120.05282 * 180.27401 * 21 20 19 23 23 O 1.36604 * 108.59491 * 180.02562 * 18 17 16 24 24 C 1.43992 * 105.43427 * 342.74112 * 23 18 17 25 25 O 1.36223 * 131.53308 * 0.03079 * 17 16 14 26 26 H 1.09002 * 109.46830 * 59.99794 * 1 2 3 27 27 H 1.08993 * 109.47519 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47040 * 300.00243 * 1 2 3 29 29 H 0.96995 * 120.00084 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47391 * 270.00005 * 13 12 2 31 31 H 1.09001 * 109.46813 * 150.00061 * 13 12 2 32 32 H 1.09004 * 109.47041 * 30.00189 * 13 12 2 33 33 H 1.08002 * 119.78347 * 179.97438 * 19 18 17 34 34 H 1.08001 * 119.83892 * 180.02562 * 20 19 18 35 35 H 1.08992 * 110.58020 * 268.51681 * 24 23 18 36 36 H 1.08999 * 110.58066 * 145.62094 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1483 -2.2857 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8160 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0932 1.4280 14 6 2.7932 -0.0357 2.0833 15 8 3.0873 1.1285 1.8907 16 6 3.2849 -0.7308 3.2865 17 6 2.5310 -0.7135 4.4670 18 6 3.0045 -1.3724 5.5972 19 6 4.2165 -2.0419 5.5513 20 6 4.9627 -2.0614 4.3860 21 6 4.5042 -1.4176 3.2535 22 9 5.2346 -1.4449 2.1173 23 8 2.0988 -1.2109 6.6070 24 6 1.2669 -0.1073 6.2028 25 8 1.3322 -0.1394 4.7649 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7088 1.1614 -3.4843 30 1 0.7375 -2.1444 1.9993 31 1 2.4628 -2.5819 1.9863 32 1 1.5294 -2.5969 0.4707 33 1 4.5813 -2.5520 6.4306 34 1 5.9061 -2.5866 4.3607 35 1 1.6662 0.8328 6.5830 36 1 0.2421 -0.2551 6.5434 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350039184.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:22 Heat of formation + Delta-G solvation = -124.320517 kcal Electronic energy + Delta-G solvation = -24361.819776 eV Core-core repulsion = 20533.523422 eV Total energy + Delta-G solvation = -3828.296354 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.12673 -43.36035 -40.91420 -38.50934 -37.46062 -37.23920 -34.88803 -32.57041 -31.01471 -30.74914 -27.80107 -27.36539 -26.85197 -25.53669 -24.13084 -22.99285 -20.73677 -19.72808 -19.03865 -18.92581 -18.44630 -17.99788 -17.83343 -17.10196 -16.79525 -16.49033 -16.31053 -16.02871 -15.77599 -15.35646 -14.88299 -14.49620 -14.34265 -14.19479 -14.08637 -13.73604 -13.63295 -13.57983 -13.19908 -12.97927 -12.86666 -12.78950 -12.73248 -12.26810 -12.14149 -11.78980 -11.27141 -11.01424 -10.57457 -10.09029 -9.52377 -9.21409 -8.18751 -6.35849 -0.33765 -0.19892 1.37161 1.40631 1.42241 1.53448 1.54245 2.04924 2.24449 2.27609 2.42099 3.09256 3.13218 3.16103 3.55348 3.69110 3.82150 3.90631 4.12798 4.24486 4.31001 4.55222 4.60136 4.69141 4.70188 4.81998 4.84658 4.88719 4.95037 4.97133 5.26394 5.38428 5.45321 5.58890 5.88295 5.93338 6.08260 6.57374 6.69526 7.08197 7.35918 8.86731 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.004946 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.947600 B = 5659.830959 C = 6361.562751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.260 3.740 3 H 0.009 0.991 4 C -0.540 4.540 5 H 0.061 0.939 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.970 3.030 9 H -0.265 1.265 10 H -0.271 1.271 11 H -0.284 1.284 12 N -0.583 5.583 13 C 0.086 3.914 14 C 0.546 3.454 15 O -0.594 6.594 16 C -0.158 4.158 17 C 0.075 3.925 18 C 0.025 3.975 19 C -0.039 4.039 20 C -0.116 4.116 21 C 0.117 3.883 22 F -0.136 7.136 23 O -0.301 6.301 24 C 0.204 3.796 25 O -0.327 6.327 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.017 0.983 29 H 0.266 0.734 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.198 0.802 34 H 0.199 0.801 35 H 0.106 0.894 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.904 -10.055 20.206 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.159 3.841 3 H 0.027 0.973 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.794 3.206 9 H -0.189 1.189 10 H -0.196 1.196 11 H -0.210 1.210 12 N -0.312 5.312 13 C -0.056 4.056 14 C 0.333 3.667 15 O -0.476 6.476 16 C -0.163 4.163 17 C 0.029 3.971 18 C -0.020 4.020 19 C -0.057 4.057 20 C -0.135 4.135 21 C 0.097 3.903 22 F -0.115 7.115 23 O -0.217 6.217 24 C 0.094 3.906 25 O -0.243 6.243 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.215 0.785 34 H 0.216 0.784 35 H 0.124 0.876 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.721 -9.386 19.974 22.381 hybrid contribution -0.121 0.540 -1.463 1.565 sum 3.599 -8.846 18.510 20.829 Atomic orbital electron populations 1.21852 0.96629 1.00269 0.99997 1.18677 0.91999 0.92195 0.81275 0.97348 1.21534 1.32193 1.13213 0.90909 0.92084 1.25774 0.94904 0.95625 1.02077 1.70030 1.37129 1.23827 1.24578 0.85330 0.78295 0.78449 0.78491 1.18909 1.19609 1.20962 1.48244 1.47617 1.13318 1.22014 1.21756 1.00513 0.80532 1.02788 1.18487 0.78864 0.86054 0.83295 1.90717 1.60259 1.18882 1.77747 1.18816 0.97059 1.06801 0.93643 1.19348 0.86132 0.97617 0.94035 1.19921 0.94036 1.02184 0.85825 1.20464 0.87904 0.97408 0.99936 1.21258 1.03149 1.00482 0.88582 1.17501 0.88688 0.99618 0.84505 1.91548 1.75646 1.94724 1.49566 1.87387 1.42357 1.51766 1.40218 1.26259 0.99577 0.90395 0.74370 1.87393 1.32300 1.78091 1.26545 0.90857 0.93290 0.96436 0.92448 0.91928 0.90809 0.90066 0.78466 0.78444 0.87629 0.81323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.63 8.97 71.98 0.65 -5.98 16 2 C 0.26 14.58 2.64 44.25 0.12 14.70 16 3 H 0.01 0.57 6.90 -2.39 -0.02 0.55 16 4 C -0.54 -30.83 7.99 25.60 0.20 -30.62 16 5 H 0.06 3.40 7.33 -2.91 -0.02 3.38 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.92 -54.22 11.32 21.45 0.24 -53.98 16 8 Si 0.97 44.17 29.54 68.60 2.03 46.19 16 9 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 N -0.58 -28.08 2.75 -830.70 -2.29 -30.37 16 13 C 0.09 3.23 9.25 127.77 1.18 4.41 16 14 C 0.55 26.57 6.73 86.65 0.58 27.16 16 15 O -0.59 -34.55 16.43 -4.05 -0.07 -34.62 16 16 C -0.16 -5.80 3.94 -20.00 -0.08 -5.87 16 17 C 0.07 2.31 6.90 22.93 0.16 2.47 16 18 C 0.03 0.56 7.14 22.55 0.16 0.72 16 19 C -0.04 -0.58 10.04 22.38 0.22 -0.35 16 20 C -0.12 -2.04 10.00 22.27 0.22 -1.82 16 21 C 0.12 3.51 6.83 22.66 0.15 3.66 16 22 F -0.14 -4.82 16.83 44.97 0.76 -4.06 16 23 O -0.30 -5.87 11.41 -77.28 -0.88 -6.76 16 24 C 0.20 3.68 8.89 113.37 1.01 4.68 16 25 O -0.33 -10.00 11.39 -72.82 -0.83 -10.83 16 26 H 0.07 4.09 6.07 -2.39 -0.01 4.08 16 27 H 0.05 2.27 7.67 -2.39 -0.02 2.26 16 28 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 2.38 6.53 -2.39 -0.02 2.36 16 32 H 0.08 3.09 7.02 -2.38 -0.02 3.07 16 33 H 0.20 1.10 8.06 -2.91 -0.02 1.07 16 34 H 0.20 1.81 8.06 -2.91 -0.02 1.78 16 35 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.17 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -80.52 314.12 5.12 -75.40 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 1.12 Total: 4.52 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 5.03 Total: 14.50 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -2.04 Total: -84.34 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -1.78 Total: -52.21 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.76 Total: -4.06 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -80.52 5.12 -75.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350039184.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.918 kcal (2) G-P(sol) polarization free energy of solvation -80.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds