Wall clock time and date at job start Tue Mar 31 2020 07:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47268 * 2 1 4 4 C 1.50697 * 109.47018 * 120.00214 * 2 1 3 5 5 O 1.20830 * 120.00284 * 119.99923 * 4 2 1 6 6 O 1.34224 * 120.00149 * 299.99503 * 4 2 1 7 7 C 1.50707 * 109.46814 * 239.99614 * 2 1 3 8 8 O 1.21287 * 120.00117 * 328.01900 * 7 2 1 9 9 N 1.34781 * 119.99758 * 148.01500 * 7 2 1 10 10 C 1.46495 * 120.00007 * 185.41016 * 9 7 2 11 11 C 1.50702 * 109.46910 * 270.00316 * 10 9 7 12 12 H 1.07997 * 120.00017 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99953 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99659 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99787 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46868 * 90.00213 * 15 13 11 17 17 H 1.48500 * 109.46707 * 209.99964 * 15 13 11 18 18 H 1.48499 * 109.47220 * 330.00034 * 15 13 11 19 19 C 1.40029 * 119.99801 * 5.41083 * 9 7 2 20 20 C 1.38851 * 120.04471 * 86.27169 * 19 9 7 21 21 C 1.38109 * 119.95282 * 180.25498 * 20 19 9 22 22 C 1.38486 * 120.04714 * 359.46484 * 21 20 19 23 23 F 1.35101 * 119.95462 * 180.23731 * 22 21 20 24 24 C 1.38470 * 120.08623 * 0.50955 * 22 21 20 25 25 C 1.38114 * 120.04704 * 359.77243 * 24 22 21 26 26 H 1.09006 * 109.46786 * 300.00400 * 1 2 3 27 27 H 1.08997 * 109.47255 * 59.99795 * 1 2 3 28 28 H 1.08994 * 109.47268 * 179.97438 * 1 2 3 29 29 H 0.96704 * 117.00752 * 179.97438 * 6 4 2 30 30 H 1.09004 * 109.47231 * 29.99702 * 10 9 7 31 31 H 1.08990 * 109.47131 * 150.00124 * 10 9 7 32 32 H 0.96999 * 119.99566 * 180.02562 * 14 13 11 33 33 H 1.07994 * 120.02330 * 359.97174 * 20 19 9 34 34 H 1.07997 * 119.98089 * 179.72293 * 21 20 19 35 35 H 1.07997 * 119.98055 * 179.74192 * 24 22 21 36 36 H 1.07999 * 120.02731 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7270 -1.6929 1.1196 6 8 1.7081 -0.2519 2.4495 7 6 2.0323 -0.7105 -1.2305 8 8 1.3944 -1.6267 -1.7046 9 7 3.1903 -0.3278 -1.8041 10 6 3.6195 -0.9371 -3.0653 11 6 4.4581 -2.1551 -2.7749 12 1 4.6523 -2.4459 -1.7531 13 6 4.9784 -2.8976 -3.8137 14 7 4.7422 -2.5431 -5.0580 15 14 6.0185 -4.4069 -3.4537 16 1 5.1421 -5.6026 -3.3665 17 1 7.0085 -4.5973 -4.5441 18 1 6.7315 -4.2207 -2.1645 19 6 3.9832 0.6523 -1.1945 20 6 4.9086 0.2931 -0.2237 21 6 5.6859 1.2619 0.3801 22 6 5.5507 2.5895 0.0100 23 9 6.3154 3.5351 0.5984 24 6 4.6288 2.9497 -0.9584 25 6 3.8454 1.9847 -1.5605 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 2.0535 -0.7411 3.2089 30 1 2.7434 -1.2290 -3.6445 31 1 4.2083 -0.2179 -3.6344 32 1 5.1079 -3.0657 -5.7888 33 1 5.0172 -0.7426 0.0624 34 1 6.4026 0.9835 1.1385 35 1 4.5219 3.9861 -1.2427 36 1 3.1262 2.2660 -2.3154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588562497.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:51 Heat of formation + Delta-G solvation = -139.947591 kcal Electronic energy + Delta-G solvation = -24285.943243 eV Core-core repulsion = 20456.969248 eV Total energy + Delta-G solvation = -3828.973995 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.83236 -40.78685 -39.50064 -38.15185 -36.03747 -34.90752 -33.26551 -32.50611 -31.07457 -29.16904 -27.37157 -25.28080 -23.44789 -22.95592 -22.69195 -21.38220 -19.08933 -18.06889 -17.58438 -17.18493 -16.87637 -16.59679 -16.00233 -15.62288 -15.49307 -15.29877 -14.53544 -14.27669 -13.87980 -13.77876 -13.46262 -13.44351 -12.97463 -12.60506 -12.44644 -12.19594 -12.15096 -12.05263 -11.56343 -11.43992 -11.28842 -11.06866 -10.91648 -10.66151 -10.38314 -10.18923 -9.71342 -9.43732 -9.04296 -8.46882 -8.35613 -8.01633 -6.06885 -4.10175 1.15511 1.31061 2.24253 2.55848 3.32521 3.38177 3.41266 3.49440 3.62404 3.63713 4.32166 4.44375 4.53102 4.85827 4.87910 4.92520 5.05521 5.26136 5.29889 5.37488 5.48364 5.64446 5.76137 5.88839 5.99709 6.12627 6.16181 6.29457 6.47185 6.62763 6.77950 7.03801 7.24313 7.37780 7.89002 7.90275 8.16285 8.18426 8.72312 8.94743 9.54343 11.01878 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.011440 B = 0.006874 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.064086 B = 4072.391709 C = 5288.616468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.109 4.109 3 H 0.122 0.878 4 C 0.489 3.511 5 O -0.489 6.489 6 O -0.515 6.515 7 C 0.533 3.467 8 O -0.507 6.507 9 N -0.556 5.556 10 C 0.250 3.750 11 C -0.524 4.524 12 H 0.061 0.939 13 C 0.062 3.938 14 N -0.896 5.896 15 Si 0.898 3.102 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.139 3.861 20 C -0.078 4.078 21 C -0.147 4.147 22 C 0.090 3.910 23 F -0.144 7.144 24 C -0.147 4.147 25 C -0.095 4.095 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.410 0.590 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.946 11.973 12.589 17.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.131 4.131 3 H 0.139 0.861 4 C 0.329 3.671 5 O -0.374 6.374 6 O -0.328 6.328 7 C 0.319 3.681 8 O -0.381 6.381 9 N -0.286 5.286 10 C 0.133 3.867 11 C -0.562 4.562 12 H 0.079 0.921 13 C -0.140 4.140 14 N -0.535 5.535 15 Si 0.726 3.274 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.199 1.199 19 C 0.047 3.953 20 C -0.097 4.097 21 C -0.167 4.167 22 C 0.071 3.929 23 F -0.122 7.122 24 C -0.167 4.167 25 C -0.115 4.115 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.268 0.732 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.189 11.350 11.731 16.852 hybrid contribution 1.241 -0.998 0.675 1.729 sum -2.949 10.352 12.406 16.425 Atomic orbital electron populations 1.21609 0.89619 1.04294 1.03344 1.21282 1.00381 1.01760 0.89710 0.86066 1.22796 0.77402 0.82681 0.84237 1.90834 1.34558 1.25101 1.86908 1.84488 1.72625 1.59068 1.16598 1.19448 0.81242 0.83438 0.84021 1.90711 1.56750 1.27276 1.63368 1.45882 1.18955 1.37887 1.25845 1.19475 0.96381 0.93058 0.77783 1.21391 1.31180 1.10329 0.93326 0.92063 1.24902 0.96482 0.97743 0.94838 1.69923 1.45423 1.39797 0.98346 0.86487 0.79918 0.83144 0.77863 1.20487 1.21155 1.19860 1.17758 0.94429 0.88368 0.94699 1.21550 0.93255 1.00331 0.94578 1.21055 1.02010 0.91010 1.02596 1.17711 0.93317 0.85963 0.95881 1.91477 1.73987 1.63940 1.82826 1.20953 0.97209 1.00717 0.97804 1.21332 0.99365 0.91524 0.99268 0.90752 0.90612 0.90755 0.73174 0.93294 0.94518 0.92686 0.84079 0.84677 0.84523 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.75 37.16 0.33 -1.29 16 2 C -0.11 -1.63 2.56 -92.92 -0.24 -1.87 16 3 H 0.12 1.52 6.67 -51.93 -0.35 1.18 16 4 C 0.49 7.39 7.49 36.00 0.27 7.66 16 5 O -0.49 -9.38 16.69 -18.75 -0.31 -9.70 16 6 O -0.52 -5.52 13.33 -39.24 -0.52 -6.04 16 7 C 0.53 10.90 5.91 -10.98 -0.06 10.84 16 8 O -0.51 -12.44 15.85 5.55 0.09 -12.35 16 9 N -0.56 -11.66 2.48 -114.72 -0.29 -11.95 16 10 C 0.25 6.42 5.11 -5.20 -0.03 6.39 16 11 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 12 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 13 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 15 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.14 2.41 3.58 -83.66 -0.30 2.11 16 20 C -0.08 -1.30 9.84 -39.40 -0.39 -1.69 16 21 C -0.15 -2.06 10.02 -39.54 -0.40 -2.45 16 22 C 0.09 1.20 7.30 -39.40 -0.29 0.92 16 23 F -0.14 -1.89 17.27 2.25 0.04 -1.85 16 24 C -0.15 -1.82 10.02 -39.54 -0.40 -2.21 16 25 C -0.10 -1.34 9.50 -39.40 -0.37 -1.71 16 26 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 29 H 0.41 2.65 9.10 45.56 0.41 3.07 16 30 H 0.05 1.38 7.50 -51.93 -0.39 0.99 16 31 H 0.04 0.96 8.05 -51.93 -0.42 0.54 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.14 2.64 7.95 -52.49 -0.42 2.22 16 34 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -34.63 328.35 -5.85 -40.48 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -3.22 Total: 1.74 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -2.30 Total: 3.17 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.45 Total: -37.68 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.75 Total: -28.09 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.63 -5.85 -40.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588562497.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.467 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds