Wall clock time and date at job start Tue Mar 31 2020 07:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47268 * 2 1 4 4 C 1.50697 * 109.47018 * 120.00214 * 2 1 3 5 5 O 1.20830 * 120.00284 * 119.99923 * 4 2 1 6 6 O 1.34224 * 120.00149 * 299.99503 * 4 2 1 7 7 C 1.50707 * 109.46814 * 239.99614 * 2 1 3 8 8 O 1.21287 * 120.00117 * 328.01900 * 7 2 1 9 9 N 1.34781 * 119.99758 * 148.01500 * 7 2 1 10 10 C 1.46495 * 120.00007 * 185.41016 * 9 7 2 11 11 C 1.50702 * 109.46910 * 270.00316 * 10 9 7 12 12 H 1.07997 * 120.00017 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99953 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99659 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99787 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46868 * 90.00213 * 15 13 11 17 17 H 1.48500 * 109.46707 * 209.99964 * 15 13 11 18 18 H 1.48499 * 109.47220 * 330.00034 * 15 13 11 19 19 C 1.40029 * 119.99801 * 5.41083 * 9 7 2 20 20 C 1.38851 * 120.04471 * 86.27169 * 19 9 7 21 21 C 1.38109 * 119.95282 * 180.25498 * 20 19 9 22 22 C 1.38486 * 120.04714 * 359.46484 * 21 20 19 23 23 F 1.35101 * 119.95462 * 180.23731 * 22 21 20 24 24 C 1.38470 * 120.08623 * 0.50955 * 22 21 20 25 25 C 1.38114 * 120.04704 * 359.77243 * 24 22 21 26 26 H 1.09006 * 109.46786 * 300.00400 * 1 2 3 27 27 H 1.08997 * 109.47255 * 59.99795 * 1 2 3 28 28 H 1.08994 * 109.47268 * 179.97438 * 1 2 3 29 29 H 0.96704 * 117.00752 * 179.97438 * 6 4 2 30 30 H 1.09004 * 109.47231 * 29.99702 * 10 9 7 31 31 H 1.08990 * 109.47131 * 150.00124 * 10 9 7 32 32 H 0.96999 * 119.99566 * 180.02562 * 14 13 11 33 33 H 1.07994 * 120.02330 * 359.97174 * 20 19 9 34 34 H 1.07997 * 119.98089 * 179.72293 * 21 20 19 35 35 H 1.07997 * 119.98055 * 179.74192 * 24 22 21 36 36 H 1.07999 * 120.02731 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7270 -1.6929 1.1196 6 8 1.7081 -0.2519 2.4495 7 6 2.0323 -0.7105 -1.2305 8 8 1.3944 -1.6267 -1.7046 9 7 3.1903 -0.3278 -1.8041 10 6 3.6195 -0.9371 -3.0653 11 6 4.4581 -2.1551 -2.7749 12 1 4.6523 -2.4459 -1.7531 13 6 4.9784 -2.8976 -3.8137 14 7 4.7422 -2.5431 -5.0580 15 14 6.0185 -4.4069 -3.4537 16 1 5.1421 -5.6026 -3.3665 17 1 7.0085 -4.5973 -4.5441 18 1 6.7315 -4.2207 -2.1645 19 6 3.9832 0.6523 -1.1945 20 6 4.9086 0.2931 -0.2237 21 6 5.6859 1.2619 0.3801 22 6 5.5507 2.5895 0.0100 23 9 6.3154 3.5351 0.5984 24 6 4.6288 2.9497 -0.9584 25 6 3.8454 1.9847 -1.5605 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 2.0535 -0.7411 3.2089 30 1 2.7434 -1.2290 -3.6445 31 1 4.2083 -0.2179 -3.6344 32 1 5.1079 -3.0657 -5.7888 33 1 5.0172 -0.7426 0.0624 34 1 6.4026 0.9835 1.1385 35 1 4.5219 3.9861 -1.2427 36 1 3.1262 2.2660 -2.3154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588562497.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:50 Heat of formation + Delta-G solvation = -163.159059 kcal Electronic energy + Delta-G solvation = -24286.949768 eV Core-core repulsion = 20456.969248 eV Total energy + Delta-G solvation = -3829.980520 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.89167 -42.12863 -40.77717 -39.52928 -37.16067 -36.55204 -34.89980 -34.22767 -32.20193 -30.66790 -29.13886 -26.58295 -25.15567 -24.13493 -24.04395 -22.75134 -20.46950 -19.24053 -18.80814 -18.71865 -18.45196 -18.04330 -17.34497 -17.19652 -16.64170 -16.56104 -16.16013 -15.74939 -15.38611 -15.10767 -14.62695 -14.55057 -14.29244 -14.22142 -13.95873 -13.52909 -13.40761 -13.28632 -13.15797 -12.93427 -12.69973 -12.63383 -12.57036 -12.27608 -12.18001 -11.73775 -11.60735 -11.05690 -10.67852 -10.15291 -9.83465 -9.56651 -8.27165 -6.38747 -0.03000 0.19420 1.06494 1.19638 1.31992 1.34904 1.44689 2.01422 2.26868 2.38707 2.46510 3.03350 3.19948 3.23402 3.77505 3.77960 3.89689 3.95425 4.20189 4.24746 4.36359 4.59745 4.74349 4.81023 4.91403 4.97717 5.06482 5.07904 5.12688 5.16459 5.41885 5.48733 5.50669 5.69577 5.82479 6.00690 6.55577 6.67875 6.88049 7.14786 7.32165 8.80728 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.011440 B = 0.006874 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.064086 B = 4072.391709 C = 5288.616468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.152 0.848 4 C 0.498 3.502 5 O -0.539 6.539 6 O -0.493 6.493 7 C 0.525 3.475 8 O -0.563 6.563 9 N -0.558 5.558 10 C 0.267 3.733 11 C -0.539 4.539 12 H 0.045 0.955 13 C 0.014 3.986 14 N -0.923 5.923 15 Si 0.959 3.041 16 H -0.280 1.280 17 H -0.269 1.269 18 H -0.269 1.269 19 C 0.107 3.893 20 C -0.092 4.092 21 C -0.141 4.141 22 C 0.098 3.902 23 F -0.137 7.137 24 C -0.127 4.127 25 C -0.088 4.088 26 H 0.112 0.888 27 H 0.085 0.915 28 H 0.052 0.948 29 H 0.431 0.569 30 H 0.012 0.988 31 H 0.030 0.970 32 H 0.268 0.732 33 H 0.111 0.889 34 H 0.154 0.846 35 H 0.175 0.825 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.494 14.409 14.274 20.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 H 0.169 0.831 4 C 0.340 3.660 5 O -0.429 6.429 6 O -0.306 6.306 7 C 0.313 3.687 8 O -0.441 6.441 9 N -0.285 5.285 10 C 0.147 3.853 11 C -0.577 4.577 12 H 0.063 0.937 13 C -0.186 4.186 14 N -0.563 5.563 15 Si 0.783 3.217 16 H -0.206 1.206 17 H -0.194 1.194 18 H -0.194 1.194 19 C 0.016 3.984 20 C -0.111 4.111 21 C -0.161 4.161 22 C 0.078 3.922 23 F -0.116 7.116 24 C -0.146 4.146 25 C -0.107 4.107 26 H 0.131 0.869 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.294 0.706 30 H 0.030 0.970 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.172 0.828 35 H 0.192 0.808 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.731 13.842 13.476 19.676 hybrid contribution 1.116 -1.649 0.237 2.006 sum -2.615 12.193 13.713 18.535 Atomic orbital electron populations 1.21676 0.87390 1.03650 1.05697 1.21229 1.01925 1.02124 0.86960 0.83067 1.22733 0.76220 0.81661 0.85389 1.90834 1.36967 1.27379 1.87721 1.84418 1.71801 1.58558 1.15853 1.20419 0.80406 0.82842 0.85074 1.90667 1.58325 1.29853 1.65277 1.45683 1.19726 1.38518 1.24611 1.18891 0.94117 0.92369 0.79899 1.21593 1.31809 1.11677 0.92636 0.93682 1.25713 0.97626 1.00536 0.94698 1.70011 1.46218 1.40988 0.99058 0.85551 0.78554 0.79304 0.78269 1.20594 1.19419 1.19354 1.17997 0.95398 0.88898 0.96062 1.21300 0.94537 0.99584 0.95701 1.21135 1.01490 0.90942 1.02484 1.17759 0.93126 0.85602 0.95664 1.91503 1.73835 1.63551 1.82713 1.21271 0.95270 1.02007 0.96094 1.21442 0.99829 0.90078 0.99336 0.86950 0.89649 0.92918 0.70637 0.96968 0.95248 0.92273 0.87130 0.82844 0.80758 0.82800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.75 71.98 0.63 -2.29 16 2 C -0.10 -2.92 2.56 -12.28 -0.03 -2.95 16 3 H 0.15 3.43 6.67 -2.39 -0.02 3.42 16 4 C 0.50 14.67 7.49 71.24 0.53 15.21 16 5 O -0.54 -21.31 16.69 21.95 0.37 -20.95 16 6 O -0.49 -9.20 13.33 -51.36 -0.68 -9.89 16 7 C 0.52 22.25 5.91 87.66 0.52 22.76 16 8 O -0.56 -29.35 15.85 -3.05 -0.05 -29.39 16 9 N -0.56 -24.27 2.48 -635.24 -1.58 -25.84 16 10 C 0.27 14.45 5.11 85.63 0.44 14.89 16 11 C -0.54 -32.09 9.39 25.60 0.24 -31.85 16 12 H 0.04 2.77 7.81 -2.91 -0.02 2.75 16 13 C 0.01 0.80 5.46 84.66 0.46 1.27 16 14 N -0.92 -55.98 13.29 21.45 0.28 -55.69 16 15 Si 0.96 46.68 29.54 68.60 2.03 48.70 16 16 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 19 C 0.11 3.68 3.58 38.13 0.14 3.82 16 20 C -0.09 -3.07 9.84 22.39 0.22 -2.85 16 21 C -0.14 -3.68 10.02 22.30 0.22 -3.45 16 22 C 0.10 2.26 7.30 22.38 0.16 2.42 16 23 F -0.14 -3.07 17.27 44.97 0.78 -2.29 16 24 C -0.13 -2.62 10.02 22.30 0.22 -2.40 16 25 C -0.09 -2.25 9.50 22.39 0.21 -2.04 16 26 H 0.11 1.73 8.11 -2.38 -0.02 1.71 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.45 7.85 -2.39 -0.02 1.43 16 29 H 0.43 4.42 9.10 -74.05 -0.67 3.75 16 30 H 0.01 0.74 7.50 -2.38 -0.02 0.73 16 31 H 0.03 1.61 8.05 -2.39 -0.02 1.59 16 32 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.11 4.37 7.95 -2.91 -0.02 4.35 16 34 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -79.99 328.35 5.56 -74.43 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.45 Total: 8.38 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 3.97 Total: 12.54 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -1.29 Total: -81.54 kcal Atomic # 8 Polarization: -59.86 SS G_CDS: -0.37 Total: -60.23 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.78 Total: -2.29 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -79.99 5.56 -74.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588562497.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.728 kcal (2) G-P(sol) polarization free energy of solvation -79.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds