Wall clock time and date at job start Tue Mar 31 2020 06:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 120.00084 * 2 1 4 4 C 1.53002 * 109.47058 * 124.99589 * 3 2 1 5 5 H 1.09001 * 109.47182 * 304.99656 * 4 3 2 6 6 N 1.46495 * 109.47369 * 65.00042 * 4 3 2 7 7 C 1.39925 * 119.99952 * 205.00203 * 6 4 3 8 8 C 1.38712 * 120.07947 * 359.97438 * 7 6 4 9 9 C 1.38218 * 120.01832 * 180.02562 * 8 7 6 10 10 C 1.38538 * 120.17234 * 0.25642 * 9 8 7 11 11 F 1.35099 * 119.91798 * 179.72043 * 10 9 8 12 12 C 1.38349 * 120.16160 * 359.49039 * 10 9 8 13 13 C 1.38728 * 119.97679 * 0.50592 * 12 10 9 14 14 O 1.35801 * 120.08397 * 179.77128 * 13 12 10 15 15 C 1.34799 * 117.00058 * 354.40041 * 14 13 12 16 16 H 1.08000 * 120.00483 * 5.06434 * 15 14 13 17 17 C 1.38632 * 119.99985 * 185.06661 * 15 14 13 18 18 N 1.31578 * 119.99677 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00236 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46871 * 59.99731 * 19 17 15 21 21 H 1.48495 * 109.47311 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47111 * 300.00099 * 19 17 15 23 23 C 1.50699 * 109.46994 * 184.99928 * 4 3 2 24 24 O 1.20823 * 120.00158 * 239.99983 * 23 4 3 25 25 O 1.34229 * 120.00337 * 60.00002 * 23 4 3 26 26 H 1.08003 * 119.99870 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00220 * 179.97438 * 1 2 3 28 28 H 1.07995 * 119.99717 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.46985 * 4.99375 * 3 2 1 30 30 H 1.08996 * 109.47096 * 244.99438 * 3 2 1 31 31 H 0.97000 * 119.99972 * 24.99401 * 6 4 3 32 32 H 1.07999 * 119.99489 * 0.04852 * 8 7 6 33 33 H 1.07992 * 119.91543 * 179.97438 * 9 8 7 34 34 H 1.07994 * 120.01617 * 180.25475 * 12 10 9 35 35 H 0.97004 * 119.99416 * 180.02562 * 18 17 15 36 36 H 0.96699 * 117.00614 * 180.02562 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 2.4882 1.1470 2.1061 6 7 4.0546 0.2970 1.0004 7 6 4.7153 -0.2366 2.1124 8 6 4.4066 0.2147 3.3872 9 6 5.0604 -0.3128 4.4847 10 6 6.0288 -1.2890 4.3155 11 9 6.6687 -1.7970 5.3915 12 6 6.3388 -1.7482 3.0478 13 6 5.6865 -1.2233 1.9417 14 8 5.9924 -1.6692 0.6960 15 6 7.0182 -2.5374 0.5915 16 1 7.5025 -2.9108 1.4817 17 6 7.4516 -2.9511 -0.6587 18 7 6.8619 -2.4958 -1.7432 19 14 8.8726 -4.1549 -0.8036 20 1 8.5227 -5.4197 -0.1085 21 1 9.1392 -4.4358 -2.2371 22 1 10.0852 -3.5666 -0.1801 23 6 3.6990 2.6840 1.2542 24 8 4.9006 2.7722 1.1636 25 8 2.9556 3.7893 1.4193 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3586 2.1316 0.0894 30 1 2.6214 1.4026 -0.9313 31 1 4.2716 -0.0193 0.1094 32 1 3.6549 0.9783 3.5223 33 1 4.8191 0.0401 5.4764 34 1 7.0911 -2.5122 2.9190 35 1 7.1649 -2.7855 -2.6180 36 1 3.4263 4.6331 1.4596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588752024.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:29 Heat of formation + Delta-G solvation = -111.046169 kcal Electronic energy + Delta-G solvation = -23589.903047 eV Core-core repulsion = 19762.182312 eV Total energy + Delta-G solvation = -3827.720735 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.08877 -40.36431 -39.11434 -37.02087 -35.98033 -35.86971 -33.59233 -32.31755 -30.18586 -29.32520 -26.93561 -25.46439 -24.92892 -22.33517 -21.42308 -20.54115 -19.70416 -18.22804 -18.02203 -17.69304 -16.66375 -16.50639 -15.78682 -15.47124 -15.13997 -14.88613 -14.85363 -14.44987 -14.20943 -13.71276 -13.53646 -13.45862 -13.25763 -12.98866 -12.25058 -12.11664 -11.97326 -11.75752 -11.53343 -11.35100 -11.32166 -11.17198 -10.95177 -10.60341 -10.44250 -10.40136 -9.62012 -9.49362 -9.31081 -8.87035 -7.79060 -6.59119 -6.49627 -4.05265 2.04226 2.16378 2.20319 2.41458 3.06026 3.12822 3.14200 3.16272 3.79123 3.94268 4.43850 4.77638 4.82991 4.89858 5.03172 5.07704 5.22571 5.24325 5.46215 5.53252 5.56532 5.78081 5.79379 5.95411 6.03142 6.33321 6.49662 6.57401 6.66235 6.73535 6.74848 6.97067 7.05699 7.21181 7.51111 7.80816 7.94085 8.04973 8.22612 8.96403 9.60755 10.67691 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.011616 B = 0.005597 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.973361 B = 5001.460162 C = 6260.442401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C -0.094 4.094 4 C 0.178 3.822 5 H 0.115 0.885 6 N -0.716 5.716 7 C 0.151 3.849 8 C -0.140 4.140 9 C -0.197 4.197 10 C 0.093 3.907 11 F -0.156 7.156 12 C -0.241 4.241 13 C 0.130 3.870 14 O -0.173 6.173 15 C -0.387 4.387 16 H 0.092 0.908 17 C 0.041 3.959 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C 0.446 3.554 24 O -0.489 6.489 25 O -0.524 6.524 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.416 0.584 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.140 0.860 35 H 0.270 0.730 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.493 7.593 4.182 13.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.161 4.161 3 C -0.132 4.132 4 C 0.068 3.932 5 H 0.132 0.868 6 N -0.351 5.351 7 C 0.052 3.948 8 C -0.163 4.163 9 C -0.218 4.218 10 C 0.073 3.927 11 F -0.135 7.135 12 C -0.263 4.263 13 C 0.074 3.926 14 O -0.077 6.077 15 C -0.463 4.463 16 H 0.109 0.891 17 C -0.163 4.163 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C 0.284 3.716 24 O -0.374 6.374 25 O -0.336 6.336 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.137 0.863 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.254 0.746 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.157 0.843 35 H 0.080 0.920 36 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -10.493 7.329 3.741 13.335 hybrid contribution 1.440 -0.155 -0.083 1.450 sum -9.054 7.174 3.658 12.117 Atomic orbital electron populations 1.23827 0.95762 1.01769 1.01852 1.22895 0.95874 0.98330 0.99010 1.20961 0.97487 0.97412 0.97349 1.20231 0.88918 0.82133 1.01902 0.86777 1.44054 1.42644 1.40382 1.08056 1.16978 0.95357 0.95051 0.87456 1.19886 1.03193 1.03284 0.89962 1.20260 1.01073 1.01737 0.98707 1.17236 0.95621 0.97307 0.82583 1.91384 1.81014 1.86564 1.54552 1.20802 1.07675 1.07395 0.90394 1.18512 0.94180 0.93370 0.86493 1.83886 1.47334 1.55357 1.21152 1.21245 1.09703 1.21234 0.94162 0.89111 1.25242 0.98663 0.98322 0.94083 1.70011 1.39915 1.41868 0.97897 0.85780 0.80123 0.79758 0.77827 1.19467 1.20296 1.19473 1.24983 0.86760 0.87273 0.72615 1.90775 1.16116 1.86765 1.43731 1.84555 1.45604 1.18229 1.85186 0.88688 0.88374 0.86294 0.89002 0.89686 0.74609 0.86667 0.86426 0.84287 0.91974 0.73838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.92 14.32 29.01 0.42 -1.51 16 2 C -0.14 -1.65 9.25 -36.02 -0.33 -1.98 16 3 C -0.09 -1.05 5.16 -27.88 -0.14 -1.20 16 4 C 0.18 2.41 2.18 -69.08 -0.15 2.26 16 5 H 0.11 1.38 6.49 -51.93 -0.34 1.05 16 6 N -0.72 -12.71 4.45 -53.12 -0.24 -12.95 16 7 C 0.15 3.06 6.57 -83.52 -0.55 2.51 16 8 C -0.14 -2.51 9.16 -39.41 -0.36 -2.87 16 9 C -0.20 -3.61 10.02 -39.48 -0.40 -4.01 16 10 C 0.09 1.91 7.29 -39.43 -0.29 1.62 16 11 F -0.16 -3.09 17.26 2.25 0.04 -3.06 16 12 C -0.24 -5.44 9.14 -39.36 -0.36 -5.80 16 13 C 0.13 3.06 6.67 -38.93 -0.26 2.80 16 14 O -0.17 -4.66 9.00 -0.02 0.00 -4.66 16 15 C -0.39 -10.55 9.49 30.88 0.29 -10.26 16 16 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 17 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 18 N -0.86 -24.29 13.67 55.48 0.76 -23.54 16 19 Si 0.94 20.38 29.55 -169.99 -5.02 15.35 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 23 C 0.45 6.38 7.55 36.01 0.27 6.65 16 24 O -0.49 -9.25 17.12 -18.75 -0.32 -9.58 16 25 O -0.52 -5.42 13.23 -39.26 -0.52 -5.94 16 26 H 0.09 0.79 7.84 -52.48 -0.41 0.38 16 27 H 0.10 0.91 8.06 -52.49 -0.42 0.48 16 28 H 0.12 1.59 8.03 -52.49 -0.42 1.17 16 29 H 0.09 0.84 7.65 -51.93 -0.40 0.44 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.42 8.09 7.97 -40.82 -0.33 7.76 16 32 H 0.12 1.73 6.19 -52.49 -0.33 1.40 16 33 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.14 3.16 5.64 -52.49 -0.30 2.86 16 35 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.40 2.66 9.10 45.56 0.41 3.08 16 LS Contribution 324.60 15.07 4.89 4.89 Total: -1.00 -31.80 324.60 -5.14 -36.94 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -2.78 Total: 13.31 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -1.96 Total: -10.78 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.52 Total: -36.48 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.84 Total: -20.18 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.04 Total: -3.06 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.80 -5.14 -36.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588752024.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.107 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds