Wall clock time and date at job start Tue Mar 31 2020 06:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 120.00084 * 2 1 4 4 C 1.53002 * 109.47058 * 124.99589 * 3 2 1 5 5 H 1.09001 * 109.47182 * 304.99656 * 4 3 2 6 6 N 1.46495 * 109.47369 * 65.00042 * 4 3 2 7 7 C 1.39925 * 119.99952 * 205.00203 * 6 4 3 8 8 C 1.38712 * 120.07947 * 359.97438 * 7 6 4 9 9 C 1.38218 * 120.01832 * 180.02562 * 8 7 6 10 10 C 1.38538 * 120.17234 * 0.25642 * 9 8 7 11 11 F 1.35099 * 119.91798 * 179.72043 * 10 9 8 12 12 C 1.38349 * 120.16160 * 359.49039 * 10 9 8 13 13 C 1.38728 * 119.97679 * 0.50592 * 12 10 9 14 14 O 1.35801 * 120.08397 * 179.77128 * 13 12 10 15 15 C 1.34799 * 117.00058 * 354.40041 * 14 13 12 16 16 H 1.08000 * 120.00483 * 5.06434 * 15 14 13 17 17 C 1.38632 * 119.99985 * 185.06661 * 15 14 13 18 18 N 1.31578 * 119.99677 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00236 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46871 * 59.99731 * 19 17 15 21 21 H 1.48495 * 109.47311 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47111 * 300.00099 * 19 17 15 23 23 C 1.50699 * 109.46994 * 184.99928 * 4 3 2 24 24 O 1.20823 * 120.00158 * 239.99983 * 23 4 3 25 25 O 1.34229 * 120.00337 * 60.00002 * 23 4 3 26 26 H 1.08003 * 119.99870 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00220 * 179.97438 * 1 2 3 28 28 H 1.07995 * 119.99717 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.46985 * 4.99375 * 3 2 1 30 30 H 1.08996 * 109.47096 * 244.99438 * 3 2 1 31 31 H 0.97000 * 119.99972 * 24.99401 * 6 4 3 32 32 H 1.07999 * 119.99489 * 0.04852 * 8 7 6 33 33 H 1.07992 * 119.91543 * 179.97438 * 9 8 7 34 34 H 1.07994 * 120.01617 * 180.25475 * 12 10 9 35 35 H 0.97004 * 119.99416 * 180.02562 * 18 17 15 36 36 H 0.96699 * 117.00614 * 180.02562 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 2.4882 1.1470 2.1061 6 7 4.0546 0.2970 1.0004 7 6 4.7153 -0.2366 2.1124 8 6 4.4066 0.2147 3.3872 9 6 5.0604 -0.3128 4.4847 10 6 6.0288 -1.2890 4.3155 11 9 6.6687 -1.7970 5.3915 12 6 6.3388 -1.7482 3.0478 13 6 5.6865 -1.2233 1.9417 14 8 5.9924 -1.6692 0.6960 15 6 7.0182 -2.5374 0.5915 16 1 7.5025 -2.9108 1.4817 17 6 7.4516 -2.9511 -0.6587 18 7 6.8619 -2.4958 -1.7432 19 14 8.8726 -4.1549 -0.8036 20 1 8.5227 -5.4197 -0.1085 21 1 9.1392 -4.4358 -2.2371 22 1 10.0852 -3.5666 -0.1801 23 6 3.6990 2.6840 1.2542 24 8 4.9006 2.7722 1.1636 25 8 2.9556 3.7893 1.4193 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3586 2.1316 0.0894 30 1 2.6214 1.4026 -0.9313 31 1 4.2716 -0.0193 0.1094 32 1 3.6549 0.9783 3.5223 33 1 4.8191 0.0401 5.4764 34 1 7.0911 -2.5122 2.9190 35 1 7.1649 -2.7855 -2.6180 36 1 3.4263 4.6331 1.4596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588752024.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:29 Heat of formation + Delta-G solvation = -132.538005 kcal Electronic energy + Delta-G solvation = -23590.835002 eV Core-core repulsion = 19762.182312 eV Total energy + Delta-G solvation = -3828.652691 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.67786 -41.57828 -40.70929 -38.49217 -37.30508 -36.98061 -34.78299 -34.26568 -31.40267 -30.98492 -28.40658 -27.33566 -25.98623 -23.87055 -22.99564 -21.75505 -20.61770 -20.03147 -19.46024 -19.00009 -18.01057 -17.80446 -17.20432 -16.99451 -16.60654 -16.46314 -16.00859 -15.84936 -15.74448 -15.42848 -15.15976 -14.92330 -14.52018 -13.99598 -13.83412 -13.63768 -13.28619 -13.22458 -13.02129 -12.67583 -12.54275 -12.44844 -12.22616 -12.09903 -12.02991 -11.66451 -11.52346 -10.85751 -10.79182 -10.22452 -9.47867 -8.47358 -8.16616 -6.10158 0.42217 0.56812 1.16763 1.34648 1.43754 1.45818 1.48950 1.97692 2.16004 2.51326 2.76631 3.08589 3.29911 3.59869 3.78577 3.86258 3.97350 4.10207 4.22443 4.31639 4.42271 4.52971 4.63015 4.80604 4.91489 4.95058 5.05516 5.14683 5.27617 5.38854 5.42033 5.64032 5.81172 5.87695 5.93967 5.99470 6.37178 6.64480 6.97950 7.04990 7.73122 8.74120 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.011616 B = 0.005597 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.973361 B = 5001.460162 C = 6260.442401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.169 4.169 3 C -0.083 4.083 4 C 0.173 3.827 5 H 0.139 0.861 6 N -0.719 5.719 7 C 0.154 3.846 8 C -0.135 4.135 9 C -0.167 4.167 10 C 0.071 3.929 11 F -0.153 7.153 12 C -0.248 4.248 13 C 0.088 3.912 14 O -0.212 6.212 15 C -0.411 4.411 16 H 0.093 0.907 17 C -0.014 4.014 18 N -0.910 5.910 19 Si 1.010 2.990 20 H -0.259 1.259 21 H -0.269 1.269 22 H -0.264 1.264 23 C 0.458 3.542 24 O -0.543 6.543 25 O -0.504 6.504 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.123 0.877 30 H 0.073 0.927 31 H 0.403 0.597 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.125 0.875 35 H 0.272 0.728 36 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.482 9.216 5.956 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C -0.121 4.121 4 C 0.065 3.935 5 H 0.156 0.844 6 N -0.351 5.351 7 C 0.053 3.947 8 C -0.158 4.158 9 C -0.186 4.186 10 C 0.051 3.949 11 F -0.132 7.132 12 C -0.269 4.269 13 C 0.035 3.965 14 O -0.119 6.119 15 C -0.487 4.487 16 H 0.111 0.889 17 C -0.213 4.213 18 N -0.548 5.548 19 Si 0.830 3.170 20 H -0.184 1.184 21 H -0.194 1.194 22 H -0.189 1.189 23 C 0.298 3.702 24 O -0.432 6.432 25 O -0.316 6.316 26 H 0.138 0.862 27 H 0.120 0.880 28 H 0.107 0.893 29 H 0.141 0.859 30 H 0.091 0.909 31 H 0.239 0.761 32 H 0.173 0.827 33 H 0.176 0.824 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -12.545 9.010 5.567 16.418 hybrid contribution 1.808 -0.446 -0.423 1.910 sum -10.736 8.564 5.143 14.665 Atomic orbital electron populations 1.24054 0.94985 1.03187 0.98586 1.22717 0.96538 0.97406 1.02058 1.20926 0.97181 0.98254 0.95708 1.20597 0.88051 0.80779 1.04108 0.84427 1.44230 1.42940 1.41173 1.06798 1.17309 0.94236 0.93899 0.89262 1.20340 1.03490 1.03430 0.88555 1.20772 0.98251 0.98949 1.00667 1.17320 0.97073 0.98681 0.81864 1.91387 1.81140 1.86698 1.53994 1.20874 1.07300 1.07144 0.91574 1.19009 0.96196 0.95381 0.85904 1.83859 1.48281 1.56831 1.22913 1.21629 1.10414 1.21919 0.94737 0.88935 1.26367 1.01321 1.00145 0.93439 1.70138 1.42108 1.44163 0.98383 0.84758 0.76527 0.77480 0.78195 1.18356 1.19382 1.18862 1.24881 0.85864 0.88238 0.71171 1.90780 1.18381 1.87581 1.46464 1.84485 1.44689 1.18431 1.84030 0.86172 0.87957 0.89288 0.85854 0.90893 0.76142 0.82694 0.82377 0.85764 0.91882 0.71439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 14.32 67.78 0.97 -1.93 16 2 C -0.17 -3.71 9.25 25.65 0.24 -3.47 16 3 C -0.08 -1.70 5.16 29.85 0.15 -1.54 16 4 C 0.17 4.33 2.18 44.25 0.10 4.43 16 5 H 0.14 2.80 6.49 -2.39 -0.02 2.79 16 6 N -0.72 -25.81 4.45 -321.97 -1.43 -27.24 16 7 C 0.15 6.25 6.57 38.27 0.25 6.50 16 8 C -0.14 -4.47 9.16 22.38 0.20 -4.26 16 9 C -0.17 -5.56 10.02 22.34 0.22 -5.33 16 10 C 0.07 2.86 7.29 22.37 0.16 3.02 16 11 F -0.15 -5.90 17.26 44.97 0.78 -5.12 16 12 C -0.25 -11.54 9.14 22.41 0.20 -11.33 16 13 C 0.09 4.32 6.67 22.69 0.15 4.48 16 14 O -0.21 -12.20 9.00 -22.99 -0.21 -12.41 16 15 C -0.41 -23.76 9.49 67.91 0.64 -23.12 16 16 H 0.09 5.08 5.21 -2.91 -0.02 5.06 16 17 C -0.01 -0.80 5.49 84.82 0.47 -0.33 16 18 N -0.91 -54.13 13.67 21.61 0.30 -53.83 16 19 Si 1.01 43.26 29.55 68.60 2.03 45.29 16 20 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 22 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 23 C 0.46 12.04 7.55 71.24 0.54 12.57 16 24 O -0.54 -20.12 17.12 21.97 0.38 -19.74 16 25 O -0.50 -8.45 13.23 -51.41 -0.68 -9.13 16 26 H 0.12 1.45 7.84 -2.91 -0.02 1.43 16 27 H 0.10 1.65 8.06 -2.91 -0.02 1.63 16 28 H 0.09 2.49 8.03 -2.91 -0.02 2.47 16 29 H 0.12 1.74 7.65 -2.39 -0.02 1.73 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.40 16.65 7.97 -92.71 -0.74 15.91 16 32 H 0.16 3.88 6.19 -2.91 -0.02 3.86 16 33 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 34 H 0.12 6.00 5.64 -2.91 -0.02 5.98 16 35 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.42 3.99 9.10 -74.06 -0.67 3.31 16 Total: -1.00 -73.96 324.60 5.20 -68.76 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.26 Total: 33.75 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 4.31 Total: -20.32 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -1.14 Total: -81.07 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.51 Total: -41.28 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.78 Total: -5.12 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -73.96 5.20 -68.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588752024.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.775 kcal (2) G-P(sol) polarization free energy of solvation -73.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds