Wall clock time and date at job start Tue Mar 31 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50706 * 120.00157 * 2 1 4 4 C 1.53001 * 109.47265 * 124.99545 * 3 2 1 5 5 H 1.09006 * 109.46788 * 54.99828 * 4 3 2 6 6 N 1.46499 * 109.47141 * 295.00353 * 4 3 2 7 7 C 1.39930 * 120.00250 * 155.00218 * 6 4 3 8 8 C 1.38713 * 120.07679 * 359.97438 * 7 6 4 9 9 C 1.38220 * 120.01901 * 179.97438 * 8 7 6 10 10 C 1.38529 * 120.17183 * 0.02562 * 9 8 7 11 11 F 1.35094 * 119.91946 * 180.02562 * 10 9 8 12 12 C 1.38357 * 120.16115 * 0.02562 * 10 9 8 13 13 C 1.38726 * 119.97850 * 359.70581 * 12 10 9 14 14 O 1.35794 * 120.08612 * 180.29151 * 13 12 10 15 15 C 1.34806 * 117.00012 * 354.40593 * 14 13 12 16 16 H 1.07999 * 119.99957 * 5.05695 * 15 14 13 17 17 C 1.38630 * 119.99690 * 185.06380 * 15 14 13 18 18 N 1.31576 * 120.00461 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99610 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46969 * 90.00111 * 19 17 15 21 21 H 1.48499 * 109.47239 * 209.99290 * 19 17 15 22 22 H 1.48500 * 109.47569 * 329.99876 * 19 17 15 23 23 C 1.50698 * 109.47437 * 175.00205 * 4 3 2 24 24 O 1.20818 * 120.00404 * 119.99662 * 23 4 3 25 25 O 1.34230 * 119.99716 * 299.99978 * 23 4 3 26 26 H 1.08005 * 119.99996 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00036 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00469 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47040 * 5.00108 * 3 2 1 30 30 H 1.08990 * 109.46910 * 244.99469 * 3 2 1 31 31 H 0.97003 * 120.00172 * 334.99683 * 6 4 3 32 32 H 1.08000 * 119.99383 * 359.97438 * 8 7 6 33 33 H 1.07995 * 119.91200 * 180.02562 * 9 8 7 34 34 H 1.08001 * 120.00875 * 179.97438 * 12 10 9 35 35 H 0.97002 * 120.00168 * 180.02562 * 18 17 15 36 36 H 0.96695 * 116.99984 * 179.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 1 3.6826 0.4573 1.1404 6 7 2.2784 1.3224 2.4362 7 6 2.8689 0.8295 3.6051 8 6 4.1703 0.3502 3.5778 9 6 4.7525 -0.1359 4.7333 10 6 4.0395 -0.1467 5.9210 11 9 4.6137 -0.6225 7.0474 12 6 2.7406 0.3286 5.9563 13 6 2.1518 0.8231 4.8016 14 8 0.8792 1.2957 4.8350 15 6 0.2025 1.1502 5.9919 16 1 0.7010 0.7501 6.8624 17 6 -1.1332 1.5140 6.0640 18 7 -1.7405 2.0018 5.0035 19 14 -2.0710 1.3118 7.6668 20 1 -1.9464 2.5526 8.4732 21 1 -3.5037 1.0544 7.3730 22 1 -1.5086 0.1678 8.4285 23 6 3.8747 2.5826 1.1122 24 8 3.8443 3.3821 2.0175 25 8 4.6564 2.8073 0.0444 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6213 1.4025 -0.9313 31 1 1.3682 1.6570 2.4565 32 1 4.7288 0.3568 2.6535 33 1 5.7660 -0.5083 4.7102 34 1 2.1868 0.3187 6.8834 35 1 -2.6750 2.2567 5.0541 36 1 5.1764 3.6225 0.0448 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588752027.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:32 Heat of formation + Delta-G solvation = -110.871356 kcal Electronic energy + Delta-G solvation = -23682.639162 eV Core-core repulsion = 19854.926007 eV Total energy + Delta-G solvation = -3827.713155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.07901 -40.35454 -39.10012 -37.00341 -35.97193 -35.84326 -33.48910 -32.30862 -30.17173 -29.31185 -26.97079 -25.43885 -24.82265 -22.32373 -21.43637 -20.44091 -19.83121 -18.21523 -17.98232 -17.63551 -16.63518 -16.37943 -15.91653 -15.49565 -15.14915 -14.86261 -14.81005 -14.22865 -14.05118 -13.74907 -13.60138 -13.53165 -13.19236 -12.85986 -12.48778 -12.18332 -11.92714 -11.56800 -11.50606 -11.40519 -11.25034 -11.12540 -10.95405 -10.56797 -10.42254 -10.39180 -9.60572 -9.44067 -9.22712 -8.86783 -7.77761 -6.57086 -6.48770 -4.04329 2.05447 2.18647 2.25253 2.49325 3.06883 3.12197 3.13730 3.18145 3.83000 3.94975 4.45368 4.72136 4.88606 4.93373 5.05969 5.11839 5.25028 5.31544 5.46523 5.53059 5.57891 5.80007 5.83902 6.03325 6.05938 6.35374 6.50902 6.57511 6.72183 6.75997 6.84364 6.98224 7.07122 7.22420 7.52926 7.82563 7.94983 8.05775 8.25341 8.97161 9.62248 10.68408 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.011512 B = 0.005983 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.691089 B = 4679.145180 C = 6189.080878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.155 4.155 3 C -0.092 4.092 4 C 0.178 3.822 5 H 0.114 0.886 6 N -0.714 5.714 7 C 0.153 3.847 8 C -0.142 4.142 9 C -0.197 4.197 10 C 0.092 3.908 11 F -0.156 7.156 12 C -0.241 4.241 13 C 0.130 3.870 14 O -0.173 6.173 15 C -0.387 4.387 16 H 0.092 0.908 17 C 0.041 3.959 18 N -0.861 5.861 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.267 1.267 23 C 0.446 3.554 24 O -0.491 6.491 25 O -0.524 6.524 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.416 0.584 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.139 0.861 35 H 0.270 0.730 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.731 -2.493 -10.521 13.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.173 4.173 3 C -0.130 4.130 4 C 0.067 3.933 5 H 0.132 0.868 6 N -0.349 5.349 7 C 0.053 3.947 8 C -0.165 4.165 9 C -0.218 4.218 10 C 0.072 3.928 11 F -0.135 7.135 12 C -0.263 4.263 13 C 0.075 3.925 14 O -0.077 6.077 15 C -0.463 4.463 16 H 0.109 0.891 17 C -0.163 4.163 18 N -0.496 5.496 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.191 1.191 23 C 0.284 3.716 24 O -0.375 6.375 25 O -0.336 6.336 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.254 0.746 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.157 0.843 35 H 0.079 0.921 36 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 7.219 -2.459 -10.545 13.014 hybrid contribution -0.231 0.595 1.217 1.374 sum 6.988 -1.864 -9.328 11.804 Atomic orbital electron populations 1.23874 0.95873 1.02164 0.99263 1.22635 0.95972 0.97337 1.01404 1.20940 0.98007 0.97479 0.96567 1.20225 0.93168 0.92859 0.87029 0.86817 1.44022 1.16288 1.70484 1.04088 1.16998 0.92507 1.00500 0.84698 1.19880 0.93144 1.05631 0.97840 1.20253 1.00318 1.09538 0.91652 1.17231 0.92112 1.01461 0.82033 1.91381 1.84871 1.86624 1.50662 1.20801 0.95141 1.10178 1.00158 1.18521 0.87358 0.95660 0.91008 1.83895 1.18755 1.68047 1.36986 1.21296 0.92923 1.44415 0.87652 0.89079 1.25236 0.95577 0.96375 0.99130 1.70021 1.11794 1.39307 1.28508 0.85719 0.78666 0.79077 0.80065 1.19891 1.20274 1.19143 1.25008 0.78217 0.89392 0.78988 1.90767 1.62664 1.46241 1.37855 1.84557 1.56170 1.47364 1.45463 0.88419 0.88371 0.87098 0.90363 0.88588 0.74640 0.86675 0.86450 0.84306 0.92059 0.73861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 14.32 29.02 0.42 -1.74 16 2 C -0.16 -1.80 9.25 -36.02 -0.33 -2.13 16 3 C -0.09 -1.03 5.16 -27.88 -0.14 -1.17 16 4 C 0.18 2.40 2.18 -69.08 -0.15 2.25 16 5 H 0.11 1.35 6.49 -51.93 -0.34 1.01 16 6 N -0.71 -12.87 4.47 -53.12 -0.24 -13.11 16 7 C 0.15 3.12 6.57 -83.52 -0.55 2.57 16 8 C -0.14 -2.55 9.16 -39.41 -0.36 -2.91 16 9 C -0.20 -3.62 10.02 -39.48 -0.40 -4.02 16 10 C 0.09 1.90 7.29 -39.43 -0.29 1.61 16 11 F -0.16 -3.12 17.26 2.25 0.04 -3.08 16 12 C -0.24 -5.48 9.14 -39.36 -0.36 -5.84 16 13 C 0.13 3.09 6.67 -38.93 -0.26 2.83 16 14 O -0.17 -4.69 9.00 -0.02 0.00 -4.69 16 15 C -0.39 -10.58 9.49 30.88 0.29 -10.29 16 16 H 0.09 2.36 5.21 -52.49 -0.27 2.08 16 17 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 18 N -0.86 -24.26 13.67 55.48 0.76 -23.50 16 19 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 23 C 0.45 6.35 7.56 36.00 0.27 6.62 16 24 O -0.49 -9.24 17.12 -18.74 -0.32 -9.56 16 25 O -0.52 -5.37 13.23 -39.26 -0.52 -5.89 16 26 H 0.10 1.22 7.84 -52.48 -0.41 0.80 16 27 H 0.10 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.08 0.93 7.79 -51.93 -0.40 0.52 16 30 H 0.10 0.86 7.99 -51.93 -0.42 0.44 16 31 H 0.42 8.31 7.97 -40.82 -0.33 7.98 16 32 H 0.12 1.72 6.20 -52.49 -0.33 1.39 16 33 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.14 3.18 5.64 -52.49 -0.30 2.89 16 35 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 36 H 0.40 2.62 9.10 45.56 0.41 3.04 16 LS Contribution 324.64 15.07 4.89 4.89 Total: -1.00 -32.03 324.64 -5.14 -37.18 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -2.78 Total: 13.59 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -1.96 Total: -11.20 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.52 Total: -36.61 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.84 Total: -20.14 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.04 Total: -3.08 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.03 -5.14 -37.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588752027.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.694 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds