Wall clock time and date at job start Tue Mar 31 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50706 * 120.00157 * 2 1 4 4 C 1.53001 * 109.47265 * 124.99545 * 3 2 1 5 5 H 1.09006 * 109.46788 * 54.99828 * 4 3 2 6 6 N 1.46499 * 109.47141 * 295.00353 * 4 3 2 7 7 C 1.39930 * 120.00250 * 155.00218 * 6 4 3 8 8 C 1.38713 * 120.07679 * 359.97438 * 7 6 4 9 9 C 1.38220 * 120.01901 * 179.97438 * 8 7 6 10 10 C 1.38529 * 120.17183 * 0.02562 * 9 8 7 11 11 F 1.35094 * 119.91946 * 180.02562 * 10 9 8 12 12 C 1.38357 * 120.16115 * 0.02562 * 10 9 8 13 13 C 1.38726 * 119.97850 * 359.70581 * 12 10 9 14 14 O 1.35794 * 120.08612 * 180.29151 * 13 12 10 15 15 C 1.34806 * 117.00012 * 354.40593 * 14 13 12 16 16 H 1.07999 * 119.99957 * 5.05695 * 15 14 13 17 17 C 1.38630 * 119.99690 * 185.06380 * 15 14 13 18 18 N 1.31576 * 120.00461 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99610 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46969 * 90.00111 * 19 17 15 21 21 H 1.48499 * 109.47239 * 209.99290 * 19 17 15 22 22 H 1.48500 * 109.47569 * 329.99876 * 19 17 15 23 23 C 1.50698 * 109.47437 * 175.00205 * 4 3 2 24 24 O 1.20818 * 120.00404 * 119.99662 * 23 4 3 25 25 O 1.34230 * 119.99716 * 299.99978 * 23 4 3 26 26 H 1.08005 * 119.99996 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00036 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00469 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47040 * 5.00108 * 3 2 1 30 30 H 1.08990 * 109.46910 * 244.99469 * 3 2 1 31 31 H 0.97003 * 120.00172 * 334.99683 * 6 4 3 32 32 H 1.08000 * 119.99383 * 359.97438 * 8 7 6 33 33 H 1.07995 * 119.91200 * 180.02562 * 9 8 7 34 34 H 1.08001 * 120.00875 * 179.97438 * 12 10 9 35 35 H 0.97002 * 120.00168 * 180.02562 * 18 17 15 36 36 H 0.96695 * 116.99984 * 179.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 1 3.6826 0.4573 1.1404 6 7 2.2784 1.3224 2.4362 7 6 2.8689 0.8295 3.6051 8 6 4.1703 0.3502 3.5778 9 6 4.7525 -0.1359 4.7333 10 6 4.0395 -0.1467 5.9210 11 9 4.6137 -0.6225 7.0474 12 6 2.7406 0.3286 5.9563 13 6 2.1518 0.8231 4.8016 14 8 0.8792 1.2957 4.8350 15 6 0.2025 1.1502 5.9919 16 1 0.7010 0.7501 6.8624 17 6 -1.1332 1.5140 6.0640 18 7 -1.7405 2.0018 5.0035 19 14 -2.0710 1.3118 7.6668 20 1 -1.9464 2.5526 8.4732 21 1 -3.5037 1.0544 7.3730 22 1 -1.5086 0.1678 8.4285 23 6 3.8747 2.5826 1.1122 24 8 3.8443 3.3821 2.0175 25 8 4.6564 2.8073 0.0444 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6213 1.4025 -0.9313 31 1 1.3682 1.6570 2.4565 32 1 4.7288 0.3568 2.6535 33 1 5.7660 -0.5083 4.7102 34 1 2.1868 0.3187 6.8834 35 1 -2.6750 2.2567 5.0541 36 1 5.1764 3.6225 0.0448 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588752027.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:31 Heat of formation + Delta-G solvation = -132.515011 kcal Electronic energy + Delta-G solvation = -23683.577701 eV Core-core repulsion = 19854.926007 eV Total energy + Delta-G solvation = -3828.651694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.66974 -41.56316 -40.69564 -38.48018 -37.30077 -36.96419 -34.72572 -34.25474 -31.41062 -30.97213 -28.45348 -27.32416 -25.91222 -23.85545 -23.00323 -21.68611 -20.80530 -20.02645 -19.37905 -18.99217 -17.87318 -17.83570 -17.22723 -16.97836 -16.62734 -16.46046 -16.12170 -15.90192 -15.42620 -15.30195 -15.18986 -14.85730 -14.63219 -14.02470 -13.83267 -13.64536 -13.46239 -13.15870 -13.07775 -12.63269 -12.52887 -12.40585 -12.17665 -12.12049 -12.00065 -11.62859 -11.51451 -10.86328 -10.79033 -10.19385 -9.46558 -8.46477 -8.14824 -6.09083 0.43520 0.58291 1.16875 1.35130 1.42317 1.49589 1.50649 1.98464 2.16651 2.54215 2.77842 3.11789 3.29092 3.61178 3.72709 3.88739 3.96748 4.14457 4.23796 4.35351 4.44411 4.52458 4.59214 4.81535 4.91888 4.96785 5.06894 5.10507 5.28789 5.40250 5.43338 5.65282 5.78219 5.90250 5.93703 6.00558 6.39297 6.65704 6.98877 7.06296 7.74510 8.75077 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.011512 B = 0.005983 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.691089 B = 4679.145180 C = 6189.080878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C -0.086 4.086 4 C 0.172 3.828 5 H 0.143 0.857 6 N -0.718 5.718 7 C 0.155 3.845 8 C -0.135 4.135 9 C -0.166 4.166 10 C 0.070 3.930 11 F -0.154 7.154 12 C -0.248 4.248 13 C 0.088 3.912 14 O -0.212 6.212 15 C -0.410 4.410 16 H 0.093 0.907 17 C -0.014 4.014 18 N -0.909 5.909 19 Si 1.010 2.990 20 H -0.267 1.267 21 H -0.268 1.268 22 H -0.258 1.258 23 C 0.458 3.542 24 O -0.544 6.544 25 O -0.504 6.504 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.128 0.872 29 H 0.065 0.935 30 H 0.130 0.870 31 H 0.402 0.598 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.123 0.877 35 H 0.272 0.728 36 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.281 -3.527 -11.857 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.167 4.167 3 C -0.123 4.123 4 C 0.064 3.936 5 H 0.160 0.840 6 N -0.350 5.350 7 C 0.054 3.946 8 C -0.158 4.158 9 C -0.186 4.186 10 C 0.050 3.950 11 F -0.133 7.133 12 C -0.269 4.269 13 C 0.035 3.965 14 O -0.119 6.119 15 C -0.486 4.486 16 H 0.110 0.890 17 C -0.212 4.212 18 N -0.546 5.546 19 Si 0.830 3.170 20 H -0.192 1.192 21 H -0.193 1.193 22 H -0.182 1.182 23 C 0.299 3.701 24 O -0.433 6.433 25 O -0.316 6.316 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.146 0.854 29 H 0.084 0.916 30 H 0.147 0.853 31 H 0.237 0.763 32 H 0.175 0.825 33 H 0.176 0.824 34 H 0.141 0.859 35 H 0.081 0.919 36 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 9.851 -3.507 -11.941 15.872 hybrid contribution -0.701 0.875 1.442 1.827 sum 9.150 -2.632 -10.499 14.173 Atomic orbital electron populations 1.23953 0.96621 1.02019 1.00757 1.22825 0.95697 0.98190 0.99976 1.20960 0.97599 0.96852 0.96888 1.20593 0.93733 0.93681 0.85627 0.83959 1.44214 1.16079 1.69730 1.04978 1.17323 0.93143 0.99615 0.84548 1.20350 0.92034 1.03936 0.99492 1.20774 1.01474 1.06085 0.90281 1.17328 0.91712 1.02778 0.83229 1.91384 1.84573 1.86626 1.50692 1.20867 0.96295 1.10295 0.99490 1.19026 0.87014 0.97576 0.92901 1.83865 1.20399 1.70627 1.36994 1.21658 0.93723 1.45011 0.88238 0.88992 1.26344 0.96154 0.95912 1.02803 1.70142 1.12207 1.41475 1.30821 0.84703 0.77335 0.79315 0.75636 1.19237 1.19301 1.18238 1.24880 0.77840 0.88649 0.78756 1.90775 1.64519 1.47959 1.40040 1.84487 1.55403 1.48563 1.43168 0.89430 0.87994 0.85390 0.91591 0.85258 0.76272 0.82496 0.82369 0.85889 0.91916 0.71454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.83 14.32 67.79 0.97 -3.86 16 2 C -0.15 -3.18 9.25 25.66 0.24 -2.94 16 3 C -0.09 -1.70 5.16 29.85 0.15 -1.55 16 4 C 0.17 4.17 2.18 44.25 0.10 4.27 16 5 H 0.14 2.66 6.49 -2.38 -0.02 2.65 16 6 N -0.72 -25.52 4.47 -321.96 -1.44 -26.96 16 7 C 0.16 6.22 6.57 38.26 0.25 6.48 16 8 C -0.14 -4.38 9.16 22.38 0.20 -4.18 16 9 C -0.17 -5.48 10.02 22.34 0.22 -5.26 16 10 C 0.07 2.81 7.29 22.37 0.16 2.97 16 11 F -0.15 -5.91 17.26 44.97 0.78 -5.13 16 12 C -0.25 -11.55 9.14 22.41 0.20 -11.35 16 13 C 0.09 4.30 6.67 22.69 0.15 4.45 16 14 O -0.21 -12.21 9.00 -22.98 -0.21 -12.42 16 15 C -0.41 -23.68 9.49 67.91 0.64 -23.04 16 16 H 0.09 5.05 5.21 -2.91 -0.02 5.04 16 17 C -0.01 -0.76 5.49 84.82 0.47 -0.29 16 18 N -0.91 -53.77 13.67 21.61 0.30 -53.47 16 19 Si 1.01 43.17 29.55 68.60 2.03 45.19 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 22 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 23 C 0.46 11.75 7.56 71.24 0.54 12.29 16 24 O -0.54 -19.82 17.12 21.99 0.38 -19.45 16 25 O -0.50 -8.18 13.23 -51.42 -0.68 -8.86 16 26 H 0.09 2.28 7.84 -2.91 -0.02 2.26 16 27 H 0.10 2.36 8.06 -2.91 -0.02 2.34 16 28 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.07 1.51 7.79 -2.39 -0.02 1.49 16 30 H 0.13 1.76 7.99 -2.39 -0.02 1.75 16 31 H 0.40 16.67 7.97 -92.71 -0.74 15.93 16 32 H 0.16 3.77 6.20 -2.91 -0.02 3.75 16 33 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.12 5.96 5.64 -2.91 -0.02 5.95 16 35 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.42 3.81 9.10 -74.06 -0.67 3.13 16 Total: -1.00 -74.05 324.64 5.20 -68.85 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: -0.26 Total: 34.25 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 4.31 Total: -22.00 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -1.14 Total: -80.44 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -0.51 Total: -40.72 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.78 Total: -5.13 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -74.05 5.20 -68.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588752027.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.663 kcal (2) G-P(sol) polarization free energy of solvation -74.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds