Wall clock time and date at job start Tue Mar 31 2020 07:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46957 * 2 1 4 4 C 1.50694 * 109.47345 * 239.99322 * 2 1 3 5 5 H 1.07999 * 120.00246 * 239.99897 * 4 2 1 6 6 C 1.37878 * 119.99624 * 60.00329 * 4 2 1 7 7 N 1.31516 * 120.00348 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47427 * 89.99455 * 8 6 4 10 10 H 1.48496 * 109.47227 * 209.99516 * 8 6 4 11 11 H 1.48499 * 109.47220 * 329.99418 * 8 6 4 12 12 C 1.50705 * 109.47201 * 119.99174 * 2 1 3 13 13 O 1.21280 * 119.99824 * 119.99754 * 12 2 1 14 14 N 1.34777 * 120.00129 * 300.00252 * 12 2 1 15 15 C 1.46495 * 119.99911 * 179.97438 * 14 12 2 16 16 H 1.09003 * 109.47419 * 36.65122 * 15 14 12 17 17 C 1.50692 * 109.47273 * 156.65367 * 15 14 12 18 18 O 1.20832 * 120.00142 * 0.02562 * 17 15 14 19 19 O 1.34230 * 120.00250 * 180.02562 * 17 15 14 20 20 C 1.50708 * 109.47005 * 276.65559 * 15 14 12 21 21 C 1.38216 * 120.01433 * 334.84812 * 20 15 14 22 22 C 1.38216 * 120.02581 * 179.97438 * 21 20 15 23 23 C 1.38264 * 120.05441 * 0.02957 * 22 21 20 24 24 C 1.38182 * 120.02339 * 359.97438 * 23 22 21 25 25 C 1.38442 * 120.01056 * 154.58134 * 20 15 14 26 26 F 1.35099 * 120.02767 * 359.97438 * 25 20 15 27 27 H 1.08997 * 109.46882 * 300.00561 * 1 2 3 28 28 H 1.09000 * 109.46779 * 60.00485 * 1 2 3 29 29 H 1.09000 * 109.46921 * 180.02562 * 1 2 3 30 30 H 0.97001 * 120.00301 * 180.02562 * 7 6 4 31 31 H 0.97003 * 119.99876 * 359.97438 * 14 12 2 32 32 H 0.96698 * 117.00107 * 180.02562 * 19 17 15 33 33 H 1.08001 * 119.98278 * 359.96246 * 21 20 15 34 34 H 1.08005 * 119.97703 * 180.02562 * 22 21 20 35 35 H 1.08003 * 119.99214 * 179.97438 * 23 22 21 36 36 H 1.08002 * 120.00966 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4826 7 7 0.9429 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.3429 -2.1621 -4.4116 10 1 2.4866 -0.1418 -5.1122 11 1 3.6294 -1.7585 -3.7120 12 6 2.0324 -0.7103 1.2306 13 8 2.7296 -1.6964 1.1194 14 7 1.7068 -0.2497 2.4547 15 6 2.1947 -0.9404 3.6509 16 1 3.2053 -1.3076 3.4717 17 6 2.2071 0.0174 4.8141 18 8 1.8451 1.1599 4.6600 19 8 2.6204 -0.3985 6.0216 20 6 1.2870 -2.1015 3.9658 21 6 -0.0291 -2.0845 3.5437 22 6 -0.8616 -3.1495 3.8320 23 6 -0.3794 -4.2327 4.5432 24 6 0.9359 -4.2519 4.9663 25 6 1.7725 -3.1880 4.6732 26 9 3.0603 -3.2084 5.0811 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7083 1.1606 -3.4845 31 1 1.1494 0.5392 2.5436 32 1 2.6102 0.2519 6.7371 33 1 -0.4070 -1.2387 2.9887 34 1 -1.8898 -3.1356 3.5014 35 1 -1.0310 -5.0641 4.7683 36 1 1.3122 -5.0979 5.5222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211356.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:43 Heat of formation + Delta-G solvation = -145.308963 kcal Electronic energy + Delta-G solvation = -24036.510306 eV Core-core repulsion = 20207.303824 eV Total energy + Delta-G solvation = -3829.206481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.85381 -40.78687 -39.18811 -38.45915 -36.34089 -34.66773 -33.78189 -31.52156 -30.60609 -30.17362 -27.46665 -25.16029 -23.15332 -22.94962 -22.39703 -20.89804 -19.65221 -18.15040 -17.74677 -17.26326 -16.66569 -16.42005 -16.12523 -15.62001 -15.41380 -15.17633 -14.83900 -14.36292 -14.17813 -14.10703 -13.30992 -13.18701 -13.13058 -12.73894 -12.49286 -12.25977 -11.81356 -11.65868 -11.52442 -11.22646 -11.02826 -10.86312 -10.76151 -10.67503 -10.31068 -9.98733 -9.09678 -9.01331 -8.81138 -8.77862 -8.65474 -8.37018 -6.04907 -4.08457 1.02578 1.17505 1.99621 2.64794 3.33313 3.39136 3.43119 3.48007 3.57077 3.83841 4.23712 4.45909 4.47535 4.72716 4.86936 5.05339 5.15948 5.21451 5.28680 5.38215 5.73809 5.97515 6.01335 6.11316 6.23856 6.29239 6.34783 6.58160 6.73232 6.78332 6.82218 6.88819 7.43187 7.67975 7.72128 7.92107 8.07410 8.33950 9.00047 9.07095 9.57106 11.02627 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.004778 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.933604 B = 5859.220822 C = 6365.057671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.034 3.966 3 H 0.056 0.944 4 C -0.502 4.502 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.526 3.474 13 O -0.534 6.534 14 N -0.731 5.731 15 C 0.199 3.801 16 H 0.132 0.868 17 C 0.486 3.514 18 O -0.503 6.503 19 O -0.505 6.505 20 C -0.132 4.132 21 C -0.064 4.064 22 C -0.132 4.132 23 C -0.087 4.087 24 C -0.160 4.160 25 C 0.126 3.874 26 F -0.131 7.131 27 H 0.013 0.987 28 H 0.095 0.905 29 H 0.032 0.968 30 H 0.261 0.739 31 H 0.408 0.592 32 H 0.412 0.588 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.404 -4.988 17.644 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.013 3.987 3 H 0.074 0.926 4 C -0.540 4.540 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.316 3.684 13 O -0.408 6.408 14 N -0.389 5.389 15 C 0.091 3.909 16 H 0.149 0.851 17 C 0.327 3.673 18 O -0.390 6.390 19 O -0.316 6.316 20 C -0.135 4.135 21 C -0.083 4.083 22 C -0.150 4.150 23 C -0.105 4.105 24 C -0.179 4.179 25 C 0.106 3.894 26 F -0.109 7.109 27 H 0.032 0.968 28 H 0.114 0.886 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.245 0.755 32 H 0.270 0.730 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.989 -5.555 17.042 18.172 hybrid contribution 0.273 0.404 -0.217 0.534 sum -2.716 -5.150 16.825 17.804 Atomic orbital electron populations 1.21770 0.96352 0.99893 1.01155 1.18893 0.94307 0.96966 0.88580 0.92612 1.21121 1.31197 1.12868 0.88855 0.90708 1.24941 0.95090 0.95028 0.99110 1.69868 1.36981 1.23002 1.23612 0.86441 0.79467 0.79230 0.82019 1.20655 1.21287 1.19739 1.22202 0.78217 0.84241 0.83723 1.90562 1.37398 1.26483 1.86321 1.46298 1.55971 1.33028 1.03602 1.18766 1.00645 0.88268 0.83218 0.85095 1.23229 0.72862 0.87462 0.83777 1.90733 1.44036 1.20132 1.84085 1.84553 1.79063 1.48012 1.19924 1.19889 0.95873 0.95542 1.02148 1.20990 0.91640 0.99155 0.96473 1.21197 1.00470 0.93833 0.99494 1.21040 0.94607 0.98227 0.96598 1.21085 0.94433 0.98427 1.03944 1.17412 0.79183 0.95064 0.97741 1.91509 1.34659 1.96596 1.88178 0.96833 0.88645 0.94838 0.92904 0.75463 0.72950 0.84577 0.85073 0.85019 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.87 37.16 0.33 -2.64 16 2 C 0.03 0.82 2.64 -92.92 -0.25 0.58 16 3 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 4 C -0.50 -14.03 8.37 -34.44 -0.29 -14.31 16 5 H 0.07 2.21 6.75 -52.49 -0.35 1.85 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -24.84 11.32 55.43 0.63 -24.21 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 12 C 0.53 11.71 7.08 -10.98 -0.08 11.64 16 13 O -0.53 -13.52 15.15 5.56 0.08 -13.44 16 14 N -0.73 -12.97 3.61 -56.07 -0.20 -13.17 16 15 C 0.20 3.16 2.45 -70.24 -0.17 2.99 16 16 H 0.13 2.24 7.27 -51.93 -0.38 1.87 16 17 C 0.49 6.72 7.68 36.00 0.28 7.00 16 18 O -0.50 -7.87 16.57 -18.76 -0.31 -8.18 16 19 O -0.50 -5.35 13.31 -39.26 -0.52 -5.87 16 20 C -0.13 -1.98 4.92 -104.55 -0.51 -2.49 16 21 C -0.06 -0.90 9.32 -39.60 -0.37 -1.27 16 22 C -0.13 -1.53 10.04 -39.58 -0.40 -1.92 16 23 C -0.09 -0.90 10.04 -39.59 -0.40 -1.30 16 24 C -0.16 -1.85 10.03 -39.51 -0.40 -2.25 16 25 C 0.13 1.77 7.21 -39.42 -0.28 1.49 16 26 F -0.13 -1.91 16.56 2.25 0.04 -1.87 16 27 H 0.01 0.24 7.56 -51.93 -0.39 -0.15 16 28 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.41 6.73 7.17 -40.82 -0.29 6.44 16 32 H 0.41 2.32 9.10 45.56 0.41 2.73 16 33 H 0.14 1.90 7.27 -52.49 -0.38 1.52 16 34 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 321.31 15.07 4.84 4.84 Total: -1.00 -32.71 321.31 -6.05 -38.76 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -2.95 Total: 7.48 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.63 Total: -0.97 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.42 Total: -37.39 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.75 Total: -27.49 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.71 -6.05 -38.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211356.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.550 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds