Wall clock time and date at job start Tue Mar 31 2020 07:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46957 * 2 1 4 4 C 1.50694 * 109.47345 * 239.99322 * 2 1 3 5 5 H 1.07999 * 120.00246 * 239.99897 * 4 2 1 6 6 C 1.37878 * 119.99624 * 60.00329 * 4 2 1 7 7 N 1.31516 * 120.00348 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47427 * 89.99455 * 8 6 4 10 10 H 1.48496 * 109.47227 * 209.99516 * 8 6 4 11 11 H 1.48499 * 109.47220 * 329.99418 * 8 6 4 12 12 C 1.50705 * 109.47201 * 119.99174 * 2 1 3 13 13 O 1.21280 * 119.99824 * 119.99754 * 12 2 1 14 14 N 1.34777 * 120.00129 * 300.00252 * 12 2 1 15 15 C 1.46495 * 119.99911 * 179.97438 * 14 12 2 16 16 H 1.09003 * 109.47419 * 36.65122 * 15 14 12 17 17 C 1.50692 * 109.47273 * 156.65367 * 15 14 12 18 18 O 1.20832 * 120.00142 * 0.02562 * 17 15 14 19 19 O 1.34230 * 120.00250 * 180.02562 * 17 15 14 20 20 C 1.50708 * 109.47005 * 276.65559 * 15 14 12 21 21 C 1.38216 * 120.01433 * 334.84812 * 20 15 14 22 22 C 1.38216 * 120.02581 * 179.97438 * 21 20 15 23 23 C 1.38264 * 120.05441 * 0.02957 * 22 21 20 24 24 C 1.38182 * 120.02339 * 359.97438 * 23 22 21 25 25 C 1.38442 * 120.01056 * 154.58134 * 20 15 14 26 26 F 1.35099 * 120.02767 * 359.97438 * 25 20 15 27 27 H 1.08997 * 109.46882 * 300.00561 * 1 2 3 28 28 H 1.09000 * 109.46779 * 60.00485 * 1 2 3 29 29 H 1.09000 * 109.46921 * 180.02562 * 1 2 3 30 30 H 0.97001 * 120.00301 * 180.02562 * 7 6 4 31 31 H 0.97003 * 119.99876 * 359.97438 * 14 12 2 32 32 H 0.96698 * 117.00107 * 180.02562 * 19 17 15 33 33 H 1.08001 * 119.98278 * 359.96246 * 21 20 15 34 34 H 1.08005 * 119.97703 * 180.02562 * 22 21 20 35 35 H 1.08003 * 119.99214 * 179.97438 * 23 22 21 36 36 H 1.08002 * 120.00966 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4826 7 7 0.9429 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.3429 -2.1621 -4.4116 10 1 2.4866 -0.1418 -5.1122 11 1 3.6294 -1.7585 -3.7120 12 6 2.0324 -0.7103 1.2306 13 8 2.7296 -1.6964 1.1194 14 7 1.7068 -0.2497 2.4547 15 6 2.1947 -0.9404 3.6509 16 1 3.2053 -1.3076 3.4717 17 6 2.2071 0.0174 4.8141 18 8 1.8451 1.1599 4.6600 19 8 2.6204 -0.3985 6.0216 20 6 1.2870 -2.1015 3.9658 21 6 -0.0291 -2.0845 3.5437 22 6 -0.8616 -3.1495 3.8320 23 6 -0.3794 -4.2327 4.5432 24 6 0.9359 -4.2519 4.9663 25 6 1.7725 -3.1880 4.6732 26 9 3.0603 -3.2084 5.0811 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7083 1.1606 -3.4845 31 1 1.1494 0.5392 2.5436 32 1 2.6102 0.2519 6.7371 33 1 -0.4070 -1.2387 2.9887 34 1 -1.8898 -3.1356 3.5014 35 1 -1.0310 -5.0641 4.7683 36 1 1.3122 -5.0979 5.5222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592211356.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:43 Heat of formation + Delta-G solvation = -166.949073 kcal Electronic energy + Delta-G solvation = -24037.448691 eV Core-core repulsion = 20207.303824 eV Total energy + Delta-G solvation = -3830.144867 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.91188 -41.98420 -40.53812 -39.71052 -37.40265 -36.09219 -35.76632 -33.09988 -31.83146 -31.51992 -28.69232 -27.18793 -24.74328 -23.96481 -23.53482 -22.17204 -21.23239 -19.25685 -18.82232 -18.71485 -18.27138 -17.72198 -17.38284 -16.99848 -16.66499 -16.47903 -16.37079 -15.82306 -15.71121 -15.11132 -14.83780 -14.62636 -14.26419 -14.16462 -13.95422 -13.47828 -13.25926 -12.97526 -12.77600 -12.72013 -12.62924 -12.59171 -12.21543 -12.18368 -12.02267 -11.94460 -11.05326 -10.68205 -10.44538 -10.38824 -9.97172 -9.66604 -8.14804 -6.25428 0.05403 0.22318 0.88327 1.41709 1.42290 1.47471 1.55649 1.79398 2.28676 2.46491 2.69403 3.14955 3.26293 3.35617 3.74421 3.87739 3.97966 4.16296 4.29746 4.37880 4.44322 4.74916 4.81593 4.93853 4.99902 5.05348 5.07348 5.22328 5.32960 5.37845 5.44050 5.48664 5.74189 5.89879 5.92153 6.18101 6.53961 6.77769 6.83334 7.31409 7.44628 8.91055 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.004778 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.933604 B = 5859.220822 C = 6365.057671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.028 3.972 3 H 0.041 0.959 4 C -0.528 4.528 5 H 0.051 0.949 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.279 1.279 12 C 0.534 3.466 13 O -0.570 6.570 14 N -0.713 5.713 15 C 0.195 3.805 16 H 0.114 0.886 17 C 0.500 3.500 18 O -0.523 6.523 19 O -0.494 6.494 20 C -0.152 4.152 21 C -0.086 4.086 22 C -0.131 4.131 23 C -0.077 4.077 24 C -0.157 4.157 25 C 0.103 3.897 26 F -0.140 7.140 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.416 0.584 32 H 0.436 0.564 33 H 0.129 0.871 34 H 0.157 0.843 35 H 0.172 0.828 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.680 -6.070 18.858 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.007 3.993 3 H 0.059 0.941 4 C -0.566 4.566 5 H 0.069 0.931 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.198 1.198 10 H -0.201 1.201 11 H -0.205 1.205 12 C 0.324 3.676 13 O -0.448 6.448 14 N -0.369 5.369 15 C 0.088 3.912 16 H 0.131 0.869 17 C 0.341 3.659 18 O -0.413 6.413 19 O -0.307 6.307 20 C -0.155 4.155 21 C -0.105 4.105 22 C -0.149 4.149 23 C -0.094 4.094 24 C -0.175 4.175 25 C 0.083 3.917 26 F -0.119 7.119 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.254 0.746 32 H 0.299 0.701 33 H 0.147 0.853 34 H 0.174 0.826 35 H 0.189 0.811 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.283 -6.606 18.319 19.939 hybrid contribution 0.654 0.717 -0.481 1.083 sum -3.629 -5.889 17.838 19.133 Atomic orbital electron populations 1.21567 0.94586 0.99824 1.01763 1.18819 0.95745 0.95866 0.88897 0.94091 1.21246 1.31751 1.12771 0.90857 0.93123 1.25577 0.95175 0.95696 1.01376 1.69950 1.37111 1.23492 1.24350 0.85592 0.78642 0.78528 0.79105 1.19811 1.20121 1.20459 1.21649 0.77816 0.83584 0.84560 1.90539 1.39143 1.28067 1.87024 1.45866 1.55022 1.32783 1.03269 1.18773 1.00105 0.89220 0.83146 0.86858 1.22680 0.72544 0.86398 0.84230 1.90730 1.45278 1.20654 1.84602 1.84490 1.78038 1.48749 1.19456 1.19848 0.96222 0.95623 1.03760 1.21102 0.91762 1.00220 0.97370 1.21563 1.01329 0.93186 0.98782 1.21514 0.94495 0.98662 0.94772 1.21474 0.94611 0.98126 1.03317 1.17702 0.79327 0.95885 0.98789 1.91479 1.35336 1.96694 1.88374 0.93189 0.90923 0.95124 0.92565 0.74599 0.70100 0.85268 0.82575 0.81094 0.82073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.87 71.98 0.64 -4.68 16 2 C 0.03 1.40 2.64 -12.29 -0.03 1.36 16 3 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.53 -30.29 8.37 25.60 0.21 -30.07 16 5 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 6 C 0.02 1.17 5.30 84.65 0.45 1.62 16 7 N -0.91 -50.72 11.32 21.45 0.24 -50.48 16 8 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 C 0.53 24.42 7.08 87.66 0.62 25.04 16 13 O -0.57 -29.96 15.15 -3.03 -0.05 -30.01 16 14 N -0.71 -25.65 3.61 -449.69 -1.62 -27.27 16 15 C 0.19 6.26 2.45 43.50 0.11 6.37 16 16 H 0.11 4.05 7.27 -2.39 -0.02 4.03 16 17 C 0.50 13.56 7.68 71.23 0.55 14.11 16 18 O -0.52 -16.03 16.57 21.94 0.36 -15.66 16 19 O -0.49 -9.79 13.31 -51.42 -0.68 -10.47 16 20 C -0.15 -4.50 4.92 -19.82 -0.10 -4.60 16 21 C -0.09 -2.32 9.32 22.26 0.21 -2.12 16 22 C -0.13 -2.68 10.04 22.27 0.22 -2.46 16 23 C -0.08 -1.32 10.04 22.26 0.22 -1.10 16 24 C -0.16 -3.21 10.03 22.31 0.22 -2.99 16 25 C 0.10 2.80 7.21 22.38 0.16 2.96 16 26 F -0.14 -4.05 16.56 44.97 0.74 -3.30 16 27 H 0.05 1.80 7.56 -2.39 -0.02 1.78 16 28 H 0.07 3.60 6.07 -2.39 -0.01 3.58 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 30 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 31 H 0.42 13.69 7.17 -92.71 -0.66 13.02 16 32 H 0.44 3.97 9.10 -74.06 -0.67 3.30 16 33 H 0.13 3.53 7.27 -2.91 -0.02 3.51 16 34 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -71.92 321.31 4.32 -67.60 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -0.19 Total: 19.44 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 3.49 Total: 3.45 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -1.38 Total: -77.75 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -0.37 Total: -56.14 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.74 Total: -3.30 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -71.92 4.32 -67.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211356.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.354 kcal (2) G-P(sol) polarization free energy of solvation -71.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds