Wall clock time and date at job start Tue Mar 31 2020 07:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46882 * 2 1 4 4 C 1.50700 * 109.47420 * 239.99956 * 2 1 3 5 5 H 1.07999 * 119.99974 * 240.00190 * 4 2 1 6 6 C 1.37875 * 119.99773 * 59.99758 * 4 2 1 7 7 N 1.31516 * 120.00226 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99898 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47383 * 89.99938 * 8 6 4 10 10 H 1.48498 * 109.47374 * 210.00188 * 8 6 4 11 11 H 1.48504 * 109.47084 * 330.00129 * 8 6 4 12 12 C 1.50702 * 109.47291 * 119.99621 * 2 1 3 13 13 O 1.21287 * 119.99840 * 120.00033 * 12 2 1 14 14 N 1.34784 * 119.99779 * 300.00714 * 12 2 1 15 15 C 1.39921 * 119.99709 * 185.26618 * 14 12 2 16 16 C 1.38905 * 120.05953 * 213.60314 * 15 14 12 17 17 C 1.38095 * 119.97993 * 180.27500 * 16 15 14 18 18 C 1.38265 * 120.09847 * 359.45157 * 17 16 15 19 19 C 1.50699 * 119.94635 * 180.27596 * 18 17 16 20 20 C 1.50696 * 109.47177 * 99.99705 * 19 18 17 21 21 O 1.20826 * 120.00454 * 0.02562 * 20 19 18 22 22 O 1.34227 * 119.99986 * 179.97438 * 20 19 18 23 23 C 1.38489 * 120.11374 * 0.24897 * 18 17 16 24 24 F 1.35102 * 119.99457 * 180.02562 * 23 18 17 25 25 C 1.38360 * 120.01922 * 0.03051 * 23 18 17 26 26 H 1.09000 * 109.47181 * 60.00103 * 1 2 3 27 27 H 1.09001 * 109.47307 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47486 * 300.00309 * 1 2 3 29 29 H 0.97001 * 120.00001 * 179.97438 * 7 6 4 30 30 H 0.96998 * 119.99845 * 5.25932 * 14 12 2 31 31 H 1.08003 * 120.00634 * 0.02562 * 16 15 14 32 32 H 1.08006 * 119.95301 * 179.72354 * 17 16 15 33 33 H 1.08999 * 109.47037 * 219.99896 * 19 18 17 34 34 H 1.09000 * 109.46845 * 339.99824 * 19 18 17 35 35 H 0.96702 * 117.00180 * 179.97438 * 22 20 19 36 36 H 1.07998 * 120.04586 * 180.02562 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4867 -0.1414 -5.1122 11 1 3.6294 -1.7583 -3.7121 12 6 2.0323 -0.7103 1.2305 13 8 2.7297 -1.6964 1.1192 14 7 1.7066 -0.2498 2.4546 15 6 2.2612 -0.8413 3.5950 16 6 1.5195 -0.9239 4.7665 17 6 2.0705 -1.5029 5.8927 18 6 3.3558 -2.0111 5.8528 19 6 3.9514 -2.6478 7.0820 20 6 3.8547 -4.1473 6.9680 21 8 3.3540 -4.6478 5.9888 22 8 4.3258 -4.9271 7.9537 23 6 4.0966 -1.9364 4.6851 24 9 5.3520 -2.4342 4.6487 25 6 3.5513 -1.3521 3.5556 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.7087 1.1612 -3.4844 30 1 1.0878 0.4917 2.5450 31 1 0.5137 -0.5318 4.7978 32 1 1.4950 -1.5629 6.8047 33 1 4.9981 -2.3569 7.1709 34 1 3.4055 -2.3146 7.9646 35 1 4.2411 -5.8832 7.8357 36 1 4.1285 -1.2940 2.6447 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:23 Heat of formation + Delta-G solvation = -153.037763 kcal Electronic energy + Delta-G solvation = -23074.021113 eV Core-core repulsion = 19244.479486 eV Total energy + Delta-G solvation = -3829.541627 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.83088 -40.52436 -39.95427 -38.15940 -36.28598 -34.63615 -33.89488 -32.08143 -30.57662 -30.39935 -27.39122 -25.22720 -23.68690 -22.89754 -22.21101 -20.91933 -19.62775 -18.27772 -18.06180 -16.87354 -16.77998 -16.27122 -15.91957 -15.70032 -15.57947 -15.37693 -15.09120 -14.48941 -14.31692 -13.60320 -13.39273 -13.29892 -13.10945 -12.79183 -12.53454 -12.27204 -11.81582 -11.66665 -11.63625 -11.39602 -11.07743 -10.82465 -10.76040 -10.72590 -10.39802 -10.04916 -9.96103 -9.07461 -8.90294 -8.64088 -8.41607 -7.93483 -6.10496 -4.14428 1.09890 1.30129 2.05828 2.84356 3.30865 3.36368 3.36885 3.41931 3.52924 3.84137 4.27644 4.38460 4.44211 4.63549 4.94709 5.13280 5.17684 5.20193 5.23268 5.45154 5.59293 5.87817 6.01582 6.09921 6.27367 6.30936 6.38352 6.50805 6.66471 6.70964 6.80693 7.12792 7.35009 7.64987 7.71835 7.82228 7.99146 8.24137 8.90932 8.95695 9.51762 10.97078 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.027427 B = 0.003387 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.630834 B = 8264.458471 C = 8799.186905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.032 3.968 3 H 0.059 0.941 4 C -0.506 4.506 5 H 0.075 0.925 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.517 3.483 13 O -0.517 6.517 14 N -0.687 5.687 15 C 0.204 3.796 16 C -0.167 4.167 17 C -0.056 4.056 18 C -0.153 4.153 19 C -0.062 4.062 20 C 0.474 3.526 21 O -0.499 6.499 22 O -0.521 6.521 23 C 0.140 3.860 24 F -0.138 7.138 25 C -0.163 4.163 26 H 0.096 0.904 27 H 0.033 0.967 28 H 0.013 0.987 29 H 0.262 0.738 30 H 0.411 0.589 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.410 0.590 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.967 -1.984 21.421 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.011 3.989 3 H 0.076 0.924 4 C -0.544 4.544 5 H 0.093 0.907 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.308 3.692 13 O -0.389 6.389 14 N -0.333 5.333 15 C 0.107 3.893 16 C -0.188 4.188 17 C -0.075 4.075 18 C -0.155 4.155 19 C -0.099 4.099 20 C 0.315 3.685 21 O -0.385 6.385 22 O -0.334 6.334 23 C 0.120 3.880 24 F -0.116 7.116 25 C -0.184 4.184 26 H 0.115 0.885 27 H 0.052 0.948 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.248 0.752 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.269 0.731 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.335 -2.292 20.828 21.083 hybrid contribution 0.074 -0.825 -0.923 1.240 sum 2.409 -3.117 19.905 20.291 Atomic orbital electron populations 1.21788 0.96236 1.00113 1.01212 1.18930 0.94400 0.96923 0.88618 0.92382 1.21122 1.31397 1.13004 0.88873 0.90654 1.24937 0.94974 0.95000 0.99170 1.69859 1.36888 1.22984 1.23740 0.86422 0.79528 0.79248 0.81880 1.20588 1.21219 1.19671 1.22420 0.78595 0.84051 0.84101 1.90584 1.36734 1.25436 1.86178 1.44248 1.47953 1.36481 1.04640 1.17653 0.90696 0.93631 0.87311 1.20917 1.00123 1.05089 0.92681 1.20549 0.92772 0.95901 0.98249 1.19071 0.96344 1.06491 0.93637 1.20049 1.04868 0.86838 0.98184 1.23469 0.74284 0.90904 0.79862 1.90801 1.40569 1.75876 1.31255 1.84507 1.76781 1.24247 1.47830 1.17211 0.79967 0.96880 0.93920 1.91472 1.37893 1.85249 1.96997 1.21137 0.95543 1.03043 0.98711 0.88503 0.94752 0.96814 0.92822 0.75215 0.84900 0.84903 0.86734 0.86412 0.73150 0.83154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.86 37.16 0.33 -2.65 16 2 C 0.03 0.77 2.65 -92.92 -0.25 0.53 16 3 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 4 C -0.51 -14.05 8.37 -34.44 -0.29 -14.34 16 5 H 0.08 2.22 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -24.59 11.32 55.43 0.63 -23.97 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.52 11.43 6.89 -10.98 -0.08 11.35 16 13 O -0.52 -13.17 13.15 5.55 0.07 -13.10 16 14 N -0.69 -11.69 5.27 -9.87 -0.05 -11.74 16 15 C 0.20 3.29 6.28 -83.70 -0.53 2.77 16 16 C -0.17 -2.10 9.96 -39.39 -0.39 -2.49 16 17 C -0.06 -0.62 9.66 -39.62 -0.38 -1.00 16 18 C -0.15 -1.92 4.44 -104.52 -0.46 -2.38 16 19 C -0.06 -0.57 5.66 -29.04 -0.16 -0.73 16 20 C 0.47 5.31 8.31 36.00 0.30 5.61 16 21 O -0.50 -7.88 16.70 -18.75 -0.31 -8.19 16 22 O -0.52 -4.22 13.42 -39.25 -0.53 -4.75 16 23 C 0.14 2.20 7.12 -39.44 -0.28 1.92 16 24 F -0.14 -2.21 16.66 2.25 0.04 -2.17 16 25 C -0.16 -2.88 8.64 -39.32 -0.34 -3.22 16 26 H 0.10 2.36 6.07 -51.93 -0.32 2.04 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.01 0.23 7.45 -51.93 -0.39 -0.15 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.41 5.64 8.09 -40.82 -0.33 5.31 16 31 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.13 0.99 8.03 -52.48 -0.42 0.57 16 33 H 0.11 0.90 7.94 -51.93 -0.41 0.49 16 34 H 0.12 0.66 8.00 -51.93 -0.42 0.25 16 35 H 0.41 1.79 9.10 45.56 0.41 2.20 16 36 H 0.15 3.02 6.41 -52.49 -0.34 2.69 16 LS Contribution 320.02 15.07 4.82 4.82 Total: -1.00 -34.37 320.02 -5.94 -40.31 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -2.96 Total: 5.25 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -2.62 Total: -3.08 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.58 Total: -35.70 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.77 Total: -26.03 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.37 -5.94 -40.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.725 kcal (2) G-P(sol) polarization free energy of solvation -34.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds