Wall clock time and date at job start Tue Mar 31 2020 07:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46882 * 2 1 4 4 C 1.50700 * 109.47420 * 239.99956 * 2 1 3 5 5 H 1.07999 * 119.99974 * 240.00190 * 4 2 1 6 6 C 1.37875 * 119.99773 * 59.99758 * 4 2 1 7 7 N 1.31516 * 120.00226 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99898 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47383 * 89.99938 * 8 6 4 10 10 H 1.48498 * 109.47374 * 210.00188 * 8 6 4 11 11 H 1.48504 * 109.47084 * 330.00129 * 8 6 4 12 12 C 1.50702 * 109.47291 * 119.99621 * 2 1 3 13 13 O 1.21287 * 119.99840 * 120.00033 * 12 2 1 14 14 N 1.34784 * 119.99779 * 300.00714 * 12 2 1 15 15 C 1.39921 * 119.99709 * 185.26618 * 14 12 2 16 16 C 1.38905 * 120.05953 * 213.60314 * 15 14 12 17 17 C 1.38095 * 119.97993 * 180.27500 * 16 15 14 18 18 C 1.38265 * 120.09847 * 359.45157 * 17 16 15 19 19 C 1.50699 * 119.94635 * 180.27596 * 18 17 16 20 20 C 1.50696 * 109.47177 * 99.99705 * 19 18 17 21 21 O 1.20826 * 120.00454 * 0.02562 * 20 19 18 22 22 O 1.34227 * 119.99986 * 179.97438 * 20 19 18 23 23 C 1.38489 * 120.11374 * 0.24897 * 18 17 16 24 24 F 1.35102 * 119.99457 * 180.02562 * 23 18 17 25 25 C 1.38360 * 120.01922 * 0.03051 * 23 18 17 26 26 H 1.09000 * 109.47181 * 60.00103 * 1 2 3 27 27 H 1.09001 * 109.47307 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47486 * 300.00309 * 1 2 3 29 29 H 0.97001 * 120.00001 * 179.97438 * 7 6 4 30 30 H 0.96998 * 119.99845 * 5.25932 * 14 12 2 31 31 H 1.08003 * 120.00634 * 0.02562 * 16 15 14 32 32 H 1.08006 * 119.95301 * 179.72354 * 17 16 15 33 33 H 1.08999 * 109.47037 * 219.99896 * 19 18 17 34 34 H 1.09000 * 109.46845 * 339.99824 * 19 18 17 35 35 H 0.96702 * 117.00180 * 179.97438 * 22 20 19 36 36 H 1.07998 * 120.04586 * 180.02562 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4867 -0.1414 -5.1122 11 1 3.6294 -1.7583 -3.7121 12 6 2.0323 -0.7103 1.2305 13 8 2.7297 -1.6964 1.1192 14 7 1.7066 -0.2498 2.4546 15 6 2.2612 -0.8413 3.5950 16 6 1.5195 -0.9239 4.7665 17 6 2.0705 -1.5029 5.8927 18 6 3.3558 -2.0111 5.8528 19 6 3.9514 -2.6478 7.0820 20 6 3.8547 -4.1473 6.9680 21 8 3.3540 -4.6478 5.9888 22 8 4.3258 -4.9271 7.9537 23 6 4.0966 -1.9364 4.6851 24 9 5.3520 -2.4342 4.6487 25 6 3.5513 -1.3521 3.5556 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.7087 1.1612 -3.4844 30 1 1.0878 0.4917 2.5450 31 1 0.5137 -0.5318 4.7978 32 1 1.4950 -1.5629 6.8047 33 1 4.9981 -2.3569 7.1709 34 1 3.4055 -2.3146 7.9646 35 1 4.2411 -5.8832 7.8357 36 1 4.1285 -1.2940 2.6447 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592211378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:23 Heat of formation + Delta-G solvation = -177.406877 kcal Electronic energy + Delta-G solvation = -23075.077837 eV Core-core repulsion = 19244.479486 eV Total energy + Delta-G solvation = -3830.598351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.03245 -41.61488 -41.16935 -39.46040 -37.12048 -36.01103 -35.86083 -33.37064 -32.19229 -31.61652 -28.48916 -27.23598 -25.13933 -24.06034 -23.47946 -21.89558 -21.23644 -19.38870 -19.08945 -18.36765 -18.07550 -17.63778 -17.27926 -16.85377 -16.71860 -16.63822 -16.37030 -16.19668 -15.91106 -15.02191 -14.72403 -14.53590 -14.30791 -14.10966 -13.68028 -13.44121 -13.31250 -13.01250 -12.82694 -12.71926 -12.63584 -12.52428 -12.38054 -12.26778 -12.06923 -11.72606 -11.29296 -11.08736 -10.68043 -10.42054 -9.83105 -9.15575 -8.19821 -6.30196 -0.00790 0.20315 1.23629 1.37951 1.39093 1.50531 1.68672 2.07327 2.21175 2.43223 2.72321 3.10226 3.22031 3.47710 3.69815 4.06963 4.10845 4.30098 4.42964 4.47289 4.52533 4.62004 4.70924 4.89005 4.93618 5.01815 5.03541 5.21447 5.26513 5.43586 5.45817 5.64208 5.70688 5.88074 5.94762 6.15452 6.55906 6.77875 7.00389 7.26982 7.40163 8.85919 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.027427 B = 0.003387 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.630834 B = 8264.458471 C = 8799.186905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.046 0.954 6 C 0.024 3.976 7 N -0.907 5.907 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.272 1.272 11 H -0.282 1.282 12 C 0.520 3.480 13 O -0.563 6.563 14 N -0.668 5.668 15 C 0.173 3.827 16 C -0.150 4.150 17 C -0.044 4.044 18 C -0.141 4.141 19 C -0.063 4.063 20 C 0.479 3.521 21 O -0.555 6.555 22 O -0.509 6.509 23 C 0.114 3.886 24 F -0.149 7.149 25 C -0.194 4.194 26 H 0.074 0.926 27 H 0.023 0.977 28 H 0.059 0.941 29 H 0.266 0.734 30 H 0.428 0.572 31 H 0.170 0.830 32 H 0.187 0.813 33 H 0.129 0.871 34 H 0.168 0.832 35 H 0.426 0.574 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 -1.575 24.714 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.008 3.992 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.064 0.936 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.779 3.221 9 H -0.200 1.200 10 H -0.197 1.197 11 H -0.207 1.207 12 C 0.311 3.689 13 O -0.439 6.439 14 N -0.314 5.314 15 C 0.078 3.922 16 C -0.170 4.170 17 C -0.062 4.062 18 C -0.143 4.143 19 C -0.100 4.100 20 C 0.323 3.677 21 O -0.446 6.446 22 O -0.323 6.323 23 C 0.094 3.906 24 F -0.127 7.127 25 C -0.215 4.215 26 H 0.093 0.907 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.268 0.732 31 H 0.187 0.813 32 H 0.204 0.796 33 H 0.147 0.853 34 H 0.185 0.815 35 H 0.288 0.712 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.840 -1.855 24.190 24.276 hybrid contribution 0.590 -0.984 -1.770 2.109 sum 1.430 -2.839 22.420 22.645 Atomic orbital electron populations 1.21606 0.94445 0.99699 1.02344 1.18838 0.95796 0.96028 0.88573 0.93174 1.21266 1.31956 1.12862 0.91208 0.93573 1.25528 0.95103 0.95689 1.01237 1.69923 1.36909 1.23316 1.24470 0.85633 0.78550 0.78633 0.79299 1.19952 1.19695 1.20713 1.21965 0.78144 0.83414 0.85366 1.90569 1.38814 1.27490 1.87071 1.43735 1.47567 1.36593 1.03549 1.17867 0.90764 0.95461 0.88136 1.21349 1.01081 1.03406 0.91158 1.21199 0.92096 0.93417 0.99526 1.19535 0.96522 1.04804 0.93413 1.20272 1.06386 0.85211 0.98102 1.23815 0.72871 0.91850 0.79151 1.90803 1.43395 1.76980 1.33391 1.84469 1.75765 1.25646 1.46425 1.17499 0.80242 0.97953 0.94891 1.91431 1.38644 1.85546 1.97117 1.21002 0.96741 1.05560 0.98239 0.90745 0.95799 0.92169 0.92419 0.73224 0.81262 0.79601 0.85298 0.81495 0.71217 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.86 71.98 0.64 -4.75 16 2 C 0.03 1.42 2.65 -12.29 -0.03 1.39 16 3 H 0.05 2.53 8.14 -2.38 -0.02 2.51 16 4 C -0.53 -31.03 8.37 25.60 0.21 -30.81 16 5 H 0.05 2.90 6.75 -2.91 -0.02 2.88 16 6 C 0.02 1.35 5.30 84.65 0.45 1.80 16 7 N -0.91 -50.26 11.32 21.45 0.24 -50.02 16 8 Si 0.95 45.24 29.54 68.60 2.03 47.27 16 9 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 12 C 0.52 23.94 6.89 87.66 0.60 24.55 16 13 O -0.56 -30.73 13.15 -3.05 -0.04 -30.77 16 14 N -0.67 -22.64 5.27 -303.51 -1.60 -24.24 16 15 C 0.17 5.53 6.28 38.15 0.24 5.76 16 16 C -0.15 -3.22 9.96 22.40 0.22 -2.99 16 17 C -0.04 -0.77 9.66 22.24 0.21 -0.56 16 18 C -0.14 -3.13 4.44 -19.80 -0.09 -3.22 16 19 C -0.06 -0.90 5.66 29.10 0.16 -0.73 16 20 C 0.48 9.49 8.31 71.23 0.59 10.08 16 21 O -0.56 -16.98 16.70 21.96 0.37 -16.61 16 22 O -0.51 -6.68 13.42 -51.38 -0.69 -7.37 16 23 C 0.11 3.63 7.12 22.36 0.16 3.79 16 24 F -0.15 -4.98 16.66 44.97 0.75 -4.24 16 25 C -0.19 -7.23 8.64 22.44 0.19 -7.04 16 26 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 27 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 2.01 7.45 -2.39 -0.02 2.00 16 29 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 30 H 0.43 11.03 8.09 -92.71 -0.75 10.28 16 31 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.19 1.35 8.03 -2.91 -0.02 1.32 16 33 H 0.13 1.56 7.94 -2.39 -0.02 1.54 16 34 H 0.17 0.77 8.00 -2.39 -0.02 0.75 16 35 H 0.43 2.66 9.10 -74.06 -0.67 1.98 16 36 H 0.11 4.88 6.41 -2.91 -0.02 4.86 16 Total: -1.00 -81.23 320.02 4.36 -76.87 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -0.27 Total: 11.85 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 3.57 Total: -2.74 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -1.36 Total: -74.26 kcal Atomic # 8 Polarization: -54.38 SS G_CDS: -0.36 Total: -54.75 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.75 Total: -4.24 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -81.23 4.36 -76.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.539 kcal (2) G-P(sol) polarization free energy of solvation -81.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds