Wall clock time and date at job start Tue Mar 31 2020 07:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47259 * 2 1 4 4 C 1.50697 * 109.47314 * 239.99314 * 2 1 3 5 5 H 1.07993 * 120.00013 * 240.00365 * 4 2 1 6 6 C 1.37875 * 119.99701 * 60.00457 * 4 2 1 7 7 N 1.31514 * 120.00258 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99861 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47035 * 89.99782 * 8 6 4 10 10 H 1.48504 * 109.47053 * 209.99618 * 8 6 4 11 11 H 1.48493 * 109.47123 * 329.99836 * 8 6 4 12 12 C 1.50698 * 109.46790 * 119.99512 * 2 1 3 13 13 O 1.21292 * 120.00329 * 97.20036 * 12 2 1 14 14 N 1.34776 * 120.00174 * 277.19832 * 12 2 1 15 15 C 1.46502 * 119.99857 * 7.66280 * 14 12 2 16 16 C 1.50698 * 109.46783 * 93.29788 * 15 14 12 17 17 O 1.20819 * 120.00293 * 359.97438 * 16 15 14 18 18 O 1.34232 * 119.99458 * 180.02562 * 16 15 14 19 19 C 1.39930 * 120.00100 * 187.66228 * 14 12 2 20 20 C 1.38905 * 120.05658 * 6.21235 * 19 14 12 21 21 C 1.38096 * 119.97783 * 179.67503 * 20 19 14 22 22 C 1.38274 * 120.09515 * 0.61928 * 21 20 19 23 23 C 1.38490 * 120.11451 * 359.67739 * 22 21 20 24 24 F 1.35091 * 119.98922 * 180.02562 * 23 22 21 25 25 C 1.38350 * 120.01717 * 0.02562 * 23 22 21 26 26 H 1.09000 * 109.46720 * 52.51156 * 1 2 3 27 27 H 1.08999 * 109.47452 * 172.51266 * 1 2 3 28 28 H 1.09000 * 109.47310 * 292.51874 * 1 2 3 29 29 H 0.96999 * 120.00384 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47021 * 213.28948 * 15 14 12 31 31 H 1.09000 * 109.47198 * 333.29425 * 15 14 12 32 32 H 0.96705 * 117.00106 * 179.97438 * 18 16 15 33 33 H 1.08001 * 120.00947 * 359.97039 * 20 19 14 34 34 H 1.07998 * 119.95520 * 180.31533 * 21 20 19 35 35 H 1.08002 * 119.93900 * 179.69848 * 22 21 20 36 36 H 1.08001 * 120.05029 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4826 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.3449 -2.1619 -4.4121 10 1 2.4874 -0.1406 -5.1119 11 1 3.6309 -1.7568 -3.7117 12 6 2.0322 -0.7103 1.2305 13 8 2.3585 -1.8768 1.1668 14 7 2.1190 -0.0494 2.4019 15 6 1.5706 1.3038 2.5218 16 6 0.1571 1.2290 3.0390 17 8 -0.3412 0.1555 3.2821 18 8 -0.5485 2.3550 3.2287 19 6 2.7327 -0.6558 3.5036 20 6 3.3663 -1.8834 3.3586 21 6 3.9773 -2.4772 4.4454 22 6 3.9483 -1.8576 5.6812 23 6 3.3124 -0.6365 5.8316 24 9 3.2861 -0.0332 7.0400 25 6 2.7041 -0.0345 4.7446 26 1 -0.3633 0.6255 -0.8154 27 1 -0.3634 -1.0189 -0.1339 28 1 -0.3634 0.3936 0.9493 29 1 0.7083 1.1606 -3.4844 30 1 2.1808 1.8830 3.2149 31 1 1.5748 1.7855 1.5440 32 1 -1.4511 2.2567 3.5616 33 1 3.3852 -2.3711 2.3952 34 1 4.4742 -3.4292 4.3312 35 1 4.4228 -2.3266 6.5306 36 1 2.2084 0.9179 4.8612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592212858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:32 Heat of formation + Delta-G solvation = -122.758671 kcal Electronic energy + Delta-G solvation = -24207.703836 eV Core-core repulsion = 20379.475209 eV Total energy + Delta-G solvation = -3828.228627 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.83344 -41.01086 -39.64529 -37.99567 -36.19140 -35.21360 -34.05238 -31.14683 -30.48088 -29.69571 -28.03056 -25.34876 -23.86924 -22.89769 -22.00879 -21.42091 -19.19827 -18.17639 -17.69021 -16.97387 -16.66785 -16.39904 -16.22764 -15.82779 -15.51911 -15.29614 -15.00169 -14.60962 -14.29402 -13.75093 -13.37140 -13.06241 -12.95386 -12.76386 -12.34587 -12.31720 -12.01750 -11.65441 -11.41391 -11.19391 -11.07115 -10.88120 -10.73500 -10.69327 -10.47664 -10.15767 -10.02261 -9.16693 -8.73355 -8.68915 -8.46700 -7.81381 -6.19190 -4.23576 1.31729 1.36635 2.23729 2.57108 3.08917 3.26160 3.32594 3.38510 3.39355 3.93110 4.33284 4.35095 4.71151 4.85995 5.03333 5.12691 5.15516 5.22088 5.31081 5.51091 5.55885 5.61640 6.08330 6.22497 6.28707 6.44233 6.51595 6.59087 6.65634 6.67346 6.75119 7.20467 7.24681 7.48110 7.61454 7.84044 7.92354 8.06740 8.69108 8.82820 9.42282 10.88790 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.018506 B = 0.005199 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.697914 B = 5384.722851 C = 6570.593560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.033 3.967 3 H 0.053 0.947 4 C -0.508 4.508 5 H 0.073 0.927 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.530 3.470 13 O -0.501 6.501 14 N -0.549 5.549 15 C 0.107 3.893 16 C 0.460 3.540 17 O -0.494 6.494 18 O -0.515 6.515 19 C 0.201 3.799 20 C -0.172 4.172 21 C -0.067 4.067 22 C -0.191 4.191 23 C 0.119 3.881 24 F -0.144 7.144 25 C -0.208 4.208 26 H 0.093 0.907 27 H 0.041 0.959 28 H 0.009 0.991 29 H 0.264 0.736 30 H 0.123 0.877 31 H 0.147 0.853 32 H 0.410 0.590 33 H 0.185 0.815 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.896 3.128 12.953 13.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.012 3.988 3 H 0.071 0.929 4 C -0.546 4.546 5 H 0.091 0.909 6 C -0.138 4.138 7 N -0.531 5.531 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.324 3.676 13 O -0.374 6.374 14 N -0.272 5.272 15 C -0.017 4.017 16 C 0.300 3.700 17 O -0.380 6.380 18 O -0.327 6.327 19 C 0.105 3.895 20 C -0.192 4.192 21 C -0.086 4.086 22 C -0.211 4.211 23 C 0.100 3.900 24 F -0.122 7.122 25 C -0.229 4.229 26 H 0.112 0.888 27 H 0.060 0.940 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.141 0.859 31 H 0.165 0.835 32 H 0.269 0.731 33 H 0.202 0.798 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.201 2.393 12.609 13.021 hybrid contribution -0.550 -0.189 -0.141 0.598 sum 1.651 2.203 12.468 12.769 Atomic orbital electron populations 1.21788 0.95513 1.01952 0.99531 1.19019 0.94634 0.96593 0.88510 0.92947 1.20993 1.31998 1.12924 0.88671 0.90852 1.24925 0.94805 0.94930 0.99183 1.69862 1.36467 1.22789 1.23966 0.86391 0.79471 0.79268 0.81763 1.20508 1.21159 1.19658 1.22498 0.74747 0.87024 0.83321 1.90253 1.46506 1.16737 1.83912 1.45772 1.54966 1.15664 1.10762 1.21204 0.88376 0.85409 1.06758 1.23934 0.89648 0.81828 0.74639 1.90780 1.70696 1.30151 1.46400 1.84505 1.31832 1.37149 1.79222 1.17822 0.92526 0.92985 0.86146 1.22697 0.98293 0.94913 1.03289 1.21005 0.96964 0.99322 0.91329 1.21025 1.05022 0.95561 0.99478 1.17238 1.00185 0.92648 0.79974 1.91466 1.94952 1.83220 1.42588 1.20570 1.07889 1.03064 0.91422 0.88795 0.94027 0.97189 0.92657 0.85925 0.83513 0.73117 0.79846 0.84900 0.85279 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.75 37.16 0.33 -2.63 16 2 C 0.03 0.77 1.81 -92.93 -0.17 0.60 16 3 H 0.05 1.18 6.43 -51.93 -0.33 0.85 16 4 C -0.51 -13.45 8.33 -34.44 -0.29 -13.73 16 5 H 0.07 2.03 6.98 -52.49 -0.37 1.66 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.57 11.41 55.43 0.63 -22.94 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.53 11.53 6.69 -10.99 -0.07 11.46 16 13 O -0.50 -11.96 12.27 5.55 0.07 -11.89 16 14 N -0.55 -9.83 2.19 -114.74 -0.25 -10.08 16 15 C 0.11 1.52 4.97 -5.19 -0.03 1.50 16 16 C 0.46 6.77 6.16 36.00 0.22 6.99 16 17 O -0.49 -9.12 16.48 -18.74 -0.31 -9.43 16 18 O -0.52 -5.74 13.42 -39.26 -0.53 -6.27 16 19 C 0.20 3.46 6.47 -83.70 -0.54 2.92 16 20 C -0.17 -2.97 8.98 -39.39 -0.35 -3.32 16 21 C -0.07 -0.94 10.04 -39.62 -0.40 -1.34 16 22 C -0.19 -2.53 10.02 -39.48 -0.40 -2.92 16 23 C 0.12 1.72 7.30 -39.45 -0.29 1.43 16 24 F -0.14 -2.01 17.27 2.25 0.04 -1.97 16 25 C -0.21 -3.12 9.06 -39.33 -0.36 -3.47 16 26 H 0.09 2.27 6.31 -51.93 -0.33 1.94 16 27 H 0.04 1.00 8.13 -51.93 -0.42 0.58 16 28 H 0.01 0.19 4.76 -51.93 -0.25 -0.06 16 29 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 30 H 0.12 1.29 6.69 -51.93 -0.35 0.94 16 31 H 0.15 2.04 5.74 -51.93 -0.30 1.74 16 32 H 0.41 2.93 9.10 45.56 0.41 3.34 16 33 H 0.19 3.58 4.70 -55.24 -0.26 3.32 16 34 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.13 1.68 6.19 -52.49 -0.33 1.36 16 LS Contribution 307.25 15.07 4.63 4.63 Total: -1.00 -31.40 307.25 -5.67 -37.07 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -2.49 Total: 6.12 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -2.43 Total: -0.94 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.38 Total: -33.03 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.77 Total: -27.58 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.40 -5.67 -37.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.692 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds