Wall clock time and date at job start Tue Mar 31 2020 07:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47259 * 2 1 4 4 C 1.50697 * 109.47314 * 239.99314 * 2 1 3 5 5 H 1.07993 * 120.00013 * 240.00365 * 4 2 1 6 6 C 1.37875 * 119.99701 * 60.00457 * 4 2 1 7 7 N 1.31514 * 120.00258 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99861 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47035 * 89.99782 * 8 6 4 10 10 H 1.48504 * 109.47053 * 209.99618 * 8 6 4 11 11 H 1.48493 * 109.47123 * 329.99836 * 8 6 4 12 12 C 1.50698 * 109.46790 * 119.99512 * 2 1 3 13 13 O 1.21292 * 120.00329 * 97.20036 * 12 2 1 14 14 N 1.34776 * 120.00174 * 277.19832 * 12 2 1 15 15 C 1.46502 * 119.99857 * 7.66280 * 14 12 2 16 16 C 1.50698 * 109.46783 * 93.29788 * 15 14 12 17 17 O 1.20819 * 120.00293 * 359.97438 * 16 15 14 18 18 O 1.34232 * 119.99458 * 180.02562 * 16 15 14 19 19 C 1.39930 * 120.00100 * 187.66228 * 14 12 2 20 20 C 1.38905 * 120.05658 * 6.21235 * 19 14 12 21 21 C 1.38096 * 119.97783 * 179.67503 * 20 19 14 22 22 C 1.38274 * 120.09515 * 0.61928 * 21 20 19 23 23 C 1.38490 * 120.11451 * 359.67739 * 22 21 20 24 24 F 1.35091 * 119.98922 * 180.02562 * 23 22 21 25 25 C 1.38350 * 120.01717 * 0.02562 * 23 22 21 26 26 H 1.09000 * 109.46720 * 52.51156 * 1 2 3 27 27 H 1.08999 * 109.47452 * 172.51266 * 1 2 3 28 28 H 1.09000 * 109.47310 * 292.51874 * 1 2 3 29 29 H 0.96999 * 120.00384 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47021 * 213.28948 * 15 14 12 31 31 H 1.09000 * 109.47198 * 333.29425 * 15 14 12 32 32 H 0.96705 * 117.00106 * 179.97438 * 18 16 15 33 33 H 1.08001 * 120.00947 * 359.97039 * 20 19 14 34 34 H 1.07998 * 119.95520 * 180.31533 * 21 20 19 35 35 H 1.08002 * 119.93900 * 179.69848 * 22 21 20 36 36 H 1.08001 * 120.05029 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4826 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.3449 -2.1619 -4.4121 10 1 2.4874 -0.1406 -5.1119 11 1 3.6309 -1.7568 -3.7117 12 6 2.0322 -0.7103 1.2305 13 8 2.3585 -1.8768 1.1668 14 7 2.1190 -0.0494 2.4019 15 6 1.5706 1.3038 2.5218 16 6 0.1571 1.2290 3.0390 17 8 -0.3412 0.1555 3.2821 18 8 -0.5485 2.3550 3.2287 19 6 2.7327 -0.6558 3.5036 20 6 3.3663 -1.8834 3.3586 21 6 3.9773 -2.4772 4.4454 22 6 3.9483 -1.8576 5.6812 23 6 3.3124 -0.6365 5.8316 24 9 3.2861 -0.0332 7.0400 25 6 2.7041 -0.0345 4.7446 26 1 -0.3633 0.6255 -0.8154 27 1 -0.3634 -1.0189 -0.1339 28 1 -0.3634 0.3936 0.9493 29 1 0.7083 1.1606 -3.4844 30 1 2.1808 1.8830 3.2149 31 1 1.5748 1.7855 1.5440 32 1 -1.4511 2.2567 3.5616 33 1 3.3852 -2.3711 2.3952 34 1 4.4742 -3.4292 4.3312 35 1 4.4228 -2.3266 6.5306 36 1 2.2084 0.9179 4.8612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592212858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:32 Heat of formation + Delta-G solvation = -142.294321 kcal Electronic energy + Delta-G solvation = -24208.550965 eV Core-core repulsion = 20379.475209 eV Total energy + Delta-G solvation = -3829.075757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.93819 -42.35469 -40.88145 -39.35130 -37.33072 -36.56987 -35.93138 -32.88436 -31.66640 -31.06400 -29.29176 -27.33052 -25.41596 -24.07157 -23.35135 -22.72425 -20.63584 -19.31092 -19.07184 -18.38489 -18.18283 -17.79432 -17.40721 -17.19088 -16.74143 -16.62714 -16.33727 -16.18430 -15.78301 -15.06788 -14.82427 -14.63248 -14.26826 -14.01853 -13.74670 -13.61277 -13.35445 -13.23153 -12.94490 -12.68672 -12.67304 -12.44542 -12.35045 -12.26064 -12.04392 -12.01464 -11.31239 -11.09987 -10.60223 -10.20126 -9.86936 -9.08518 -8.19446 -6.29548 0.14543 0.17437 1.08604 1.29726 1.42502 1.44304 1.53568 1.65922 2.18594 2.43179 2.70722 3.11736 3.20299 3.52513 3.77345 3.83027 4.03032 4.13664 4.19440 4.24108 4.39746 4.46432 4.59447 4.74865 4.86317 4.91580 5.06113 5.11420 5.36391 5.45803 5.46426 5.54301 5.64399 5.80500 5.96395 6.03398 6.24268 6.74928 6.91388 7.08968 7.38642 8.87235 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.018506 B = 0.005199 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.697914 B = 5384.722851 C = 6570.593560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.032 3.968 3 H 0.060 0.940 4 C -0.531 4.531 5 H 0.051 0.949 6 C 0.027 3.973 7 N -0.906 5.906 8 Si 0.956 3.044 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.275 1.275 12 C 0.528 3.472 13 O -0.535 6.535 14 N -0.545 5.545 15 C 0.097 3.903 16 C 0.467 3.533 17 O -0.537 6.537 18 O -0.500 6.500 19 C 0.177 3.823 20 C -0.198 4.198 21 C -0.061 4.061 22 C -0.178 4.178 23 C 0.115 3.885 24 F -0.139 7.139 25 C -0.202 4.202 26 H 0.079 0.921 27 H 0.016 0.984 28 H 0.033 0.967 29 H 0.267 0.733 30 H 0.165 0.835 31 H 0.150 0.850 32 H 0.430 0.570 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.398 4.047 14.598 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.011 3.989 3 H 0.078 0.922 4 C -0.569 4.569 5 H 0.069 0.931 6 C -0.173 4.173 7 N -0.545 5.545 8 Si 0.782 3.218 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.200 1.200 12 C 0.322 3.678 13 O -0.411 6.411 14 N -0.268 5.268 15 C -0.027 4.027 16 C 0.309 3.691 17 O -0.426 6.426 18 O -0.313 6.313 19 C 0.082 3.918 20 C -0.218 4.218 21 C -0.080 4.080 22 C -0.197 4.197 23 C 0.095 3.905 24 F -0.117 7.117 25 C -0.224 4.224 26 H 0.098 0.902 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.182 0.818 31 H 0.167 0.833 32 H 0.292 0.708 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.180 0.820 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.687 3.372 14.293 14.930 hybrid contribution -0.706 -0.427 -0.527 0.979 sum 1.981 2.945 13.767 14.217 Atomic orbital electron populations 1.21574 0.95361 1.00083 1.00163 1.18920 0.94685 0.96718 0.88611 0.92222 1.21142 1.32407 1.12818 0.90583 0.93059 1.25525 0.94952 0.95589 1.01271 1.69919 1.36652 1.23261 1.24635 0.85586 0.78678 0.78462 0.79122 1.20548 1.19889 1.19955 1.22085 0.74803 0.86658 0.84297 1.90269 1.48038 1.17959 1.84848 1.45484 1.54721 1.16634 1.09922 1.21553 0.89034 0.83960 1.08120 1.23907 0.89743 0.81767 0.73686 1.90780 1.71585 1.31775 1.48495 1.84459 1.33131 1.35160 1.78574 1.17945 0.93714 0.93582 0.86608 1.22562 1.00183 0.95716 1.03330 1.21252 0.96037 1.00085 0.90601 1.21371 1.03566 0.94800 0.99974 1.17374 1.00129 0.93055 0.79940 1.91483 1.94901 1.83195 1.42165 1.20680 1.07504 1.03625 0.90566 0.90196 0.96497 0.94820 0.92342 0.81821 0.83299 0.70797 0.82635 0.82224 0.82021 0.83567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.28 8.75 71.98 0.63 -4.65 16 2 C 0.03 1.50 1.81 -12.29 -0.02 1.48 16 3 H 0.06 2.72 6.43 -2.39 -0.02 2.71 16 4 C -0.53 -29.02 8.33 25.60 0.21 -28.81 16 5 H 0.05 2.97 6.98 -2.91 -0.02 2.95 16 6 C 0.03 1.43 5.30 84.65 0.45 1.88 16 7 N -0.91 -48.02 11.41 21.45 0.24 -47.78 16 8 Si 0.96 42.87 29.54 68.60 2.03 44.90 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.53 23.69 6.69 87.66 0.59 24.27 16 13 O -0.53 -26.88 12.27 -3.07 -0.04 -26.92 16 14 N -0.55 -19.50 2.19 -635.32 -1.39 -20.90 16 15 C 0.10 2.60 4.97 85.63 0.43 3.02 16 16 C 0.47 12.97 6.16 71.24 0.44 13.40 16 17 O -0.54 -19.40 16.48 21.98 0.36 -19.04 16 18 O -0.50 -9.79 13.42 -51.43 -0.69 -10.48 16 19 C 0.18 5.97 6.47 38.15 0.25 6.22 16 20 C -0.20 -6.86 8.98 22.40 0.20 -6.65 16 21 C -0.06 -1.60 10.04 22.24 0.22 -1.38 16 22 C -0.18 -4.15 10.02 22.34 0.22 -3.92 16 23 C 0.11 2.98 7.30 22.36 0.16 3.15 16 24 F -0.14 -3.44 17.27 44.97 0.78 -2.66 16 25 C -0.20 -5.65 9.06 22.43 0.20 -5.45 16 26 H 0.08 3.91 6.31 -2.39 -0.02 3.90 16 27 H 0.02 0.81 8.13 -2.39 -0.02 0.79 16 28 H 0.03 1.35 4.76 -2.39 -0.01 1.34 16 29 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 30 H 0.16 2.96 6.69 -2.39 -0.02 2.95 16 31 H 0.15 3.95 5.74 -2.39 -0.01 3.94 16 32 H 0.43 4.96 9.10 -74.05 -0.67 4.29 16 33 H 0.16 6.39 4.70 -46.60 -0.22 6.17 16 34 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.15 3.41 6.19 -2.91 -0.02 3.39 16 Total: -1.00 -69.29 307.25 5.55 -63.74 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.28 Total: 16.57 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 3.98 Total: 2.57 kcal Atomic # 7 Polarization: -67.52 SS G_CDS: -1.15 Total: -68.67 kcal Atomic # 8 Polarization: -56.07 SS G_CDS: -0.37 Total: -56.44 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.78 Total: -2.66 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -69.29 5.55 -63.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.559 kcal (2) G-P(sol) polarization free energy of solvation -69.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds