Wall clock time and date at job start Tue Mar 31 2020 07:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47238 * 2 1 4 4 C 1.50701 * 109.46906 * 119.99448 * 2 1 3 5 5 H 1.08004 * 119.99862 * 120.00032 * 4 2 1 6 6 C 1.37880 * 120.00251 * 300.00052 * 4 2 1 7 7 N 1.31512 * 119.99779 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 119.99624 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47264 * 90.00137 * 8 6 4 10 10 H 1.48510 * 109.46968 * 210.00076 * 8 6 4 11 11 H 1.48506 * 109.47466 * 329.99782 * 8 6 4 12 12 C 1.50701 * 109.47149 * 239.99538 * 2 1 3 13 13 O 1.21287 * 119.99708 * 264.26922 * 12 2 1 14 14 N 1.34776 * 119.99985 * 84.26863 * 12 2 1 15 15 C 1.46504 * 119.99978 * 3.63630 * 14 12 2 16 16 C 1.50693 * 109.46827 * 267.47688 * 15 14 12 17 17 O 1.20827 * 120.00288 * 0.02562 * 16 15 14 18 18 O 1.34229 * 120.00039 * 179.97438 * 16 15 14 19 19 C 1.39922 * 119.99932 * 183.62763 * 14 12 2 20 20 C 1.38910 * 120.05790 * 352.57440 * 19 14 12 21 21 C 1.38102 * 119.97791 * 180.29271 * 20 19 14 22 22 C 1.38265 * 120.09221 * 359.42911 * 21 20 19 23 23 C 1.38491 * 120.11899 * 0.27203 * 22 21 20 24 24 F 1.35098 * 119.98758 * 180.02562 * 23 22 21 25 25 C 1.38357 * 120.01761 * 0.02562 * 23 22 21 26 26 H 1.09000 * 109.47722 * 188.29074 * 1 2 3 27 27 H 1.09004 * 109.47211 * 308.29294 * 1 2 3 28 28 H 1.08998 * 109.47349 * 68.28794 * 1 2 3 29 29 H 0.97003 * 119.99295 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46946 * 27.48070 * 15 14 12 31 31 H 1.09000 * 109.46844 * 147.47770 * 15 14 12 32 32 H 0.96700 * 117.00311 * 179.97438 * 18 16 15 33 33 H 1.07998 * 120.01108 * 0.02562 * 20 19 14 34 34 H 1.08000 * 119.95230 * 179.70281 * 21 20 19 35 35 H 1.08005 * 119.93696 * 180.25461 * 22 21 20 36 36 H 1.07992 * 120.04254 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8588 3.5566 8 14 0.6247 1.2792 2.6540 9 1 -0.8029 0.8728 2.6997 10 1 0.9758 1.9954 3.9067 11 1 0.8469 2.1766 1.4918 12 6 2.0323 -0.7105 -1.2304 13 8 2.3333 -1.8840 -1.1726 14 7 2.1471 -0.0419 -2.3950 15 6 1.8598 1.3937 -2.4468 16 6 0.4154 1.6037 -2.8219 17 8 -0.3007 0.6518 -3.0246 18 8 -0.0759 2.8481 -2.9298 19 6 2.5407 -0.7190 -3.5545 20 6 2.9617 -2.0406 -3.4795 21 6 3.3557 -2.7054 -4.6241 22 6 3.3205 -2.0610 -5.8469 23 6 2.8956 -0.7453 -5.9271 24 9 2.8618 -0.1184 -7.1234 25 6 2.5057 -0.0728 -4.7825 26 1 -0.3634 -1.0169 0.1482 27 1 -0.3634 0.6368 0.8066 28 1 -0.3634 0.3802 -0.9547 29 1 1.9039 -0.5271 4.4376 30 1 2.0497 1.8378 -1.4697 31 1 2.5008 1.8658 -3.1913 32 1 -1.0080 2.9326 -3.1731 33 1 2.9851 -2.5468 -2.5258 34 1 3.6875 -3.7314 -4.5646 35 1 3.6253 -2.5845 -6.7410 36 1 2.1747 0.9532 -4.8446 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592212859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:34 Heat of formation + Delta-G solvation = -109.426079 kcal Electronic energy + Delta-G solvation = -24336.830259 eV Core-core repulsion = 20509.179777 eV Total energy + Delta-G solvation = -3827.650483 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.88318 -41.17402 -39.79198 -38.10284 -36.35119 -35.35151 -34.14448 -31.57587 -30.54973 -30.08980 -28.16883 -25.33716 -24.15193 -22.97975 -22.15411 -21.49896 -19.17940 -18.33598 -17.87254 -17.23950 -16.82194 -16.54918 -16.35550 -16.12447 -15.57448 -15.41511 -15.06421 -14.79746 -14.39918 -13.81686 -13.51560 -13.33314 -13.00430 -12.91894 -12.52478 -12.42952 -12.35562 -12.16465 -11.66859 -11.52518 -11.22344 -11.13579 -10.90876 -10.73087 -10.42277 -10.15562 -9.74041 -9.27918 -8.77464 -8.74772 -8.67627 -7.93085 -6.20423 -4.22700 1.25089 1.31048 2.06591 2.43393 2.94986 3.14063 3.18215 3.24675 3.26668 3.82737 4.24206 4.28767 4.58557 4.73679 4.92231 4.99784 5.04690 5.10010 5.16128 5.35095 5.49730 5.53160 5.95935 5.98753 6.11673 6.17408 6.20910 6.28413 6.40434 6.51935 6.58113 6.60632 7.00347 7.16545 7.28255 7.48947 7.76750 8.32206 8.56750 8.92537 9.36413 10.92010 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.005523 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.419586 B = 5068.087052 C = 6151.047742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.000 4.000 3 H 0.048 0.952 4 C -0.511 4.511 5 H 0.092 0.908 6 C 0.077 3.923 7 N -0.888 5.888 8 Si 0.882 3.118 9 H -0.276 1.276 10 H -0.292 1.292 11 H -0.268 1.268 12 C 0.541 3.459 13 O -0.488 6.488 14 N -0.548 5.548 15 C 0.105 3.895 16 C 0.456 3.544 17 O -0.489 6.489 18 O -0.515 6.515 19 C 0.198 3.802 20 C -0.176 4.176 21 C -0.067 4.067 22 C -0.188 4.188 23 C 0.118 3.882 24 F -0.143 7.143 25 C -0.206 4.206 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.267 0.733 30 H 0.144 0.856 31 H 0.128 0.872 32 H 0.411 0.589 33 H 0.192 0.808 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.491 6.424 -15.942 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 H 0.066 0.934 4 C -0.549 4.549 5 H 0.110 0.890 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.219 1.219 11 H -0.193 1.193 12 C 0.334 3.666 13 O -0.360 6.360 14 N -0.271 5.271 15 C -0.020 4.020 16 C 0.296 3.704 17 O -0.375 6.375 18 O -0.327 6.327 19 C 0.102 3.898 20 C -0.195 4.195 21 C -0.086 4.086 22 C -0.208 4.208 23 C 0.099 3.901 24 F -0.122 7.122 25 C -0.228 4.228 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.161 0.839 31 H 0.145 0.855 32 H 0.270 0.730 33 H 0.208 0.792 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.144 5.510 -15.558 16.505 hybrid contribution -1.440 1.204 -0.343 1.908 sum -1.584 6.713 -15.901 17.333 Atomic orbital electron populations 1.22255 0.96208 1.02811 0.99791 1.19436 0.93902 0.97079 0.91713 0.93403 1.20785 1.32942 1.14210 0.86983 0.88961 1.24919 0.95512 0.96568 0.95647 1.69861 1.44782 1.39882 0.97988 0.86949 0.81056 0.83606 0.77207 1.20311 1.21928 1.19350 1.21725 0.74758 0.87194 0.82933 1.90225 1.46453 1.16463 1.82894 1.45655 1.64867 1.08152 1.08415 1.21240 0.89962 0.83043 1.07715 1.23987 0.91898 0.80699 0.73849 1.90773 1.59893 1.42345 1.44504 1.84502 1.34216 1.31614 1.82367 1.17793 0.94578 0.92288 0.85113 1.22978 0.99845 0.93427 1.03256 1.21050 0.96598 0.99866 0.91071 1.21061 1.06483 0.93639 0.99646 1.17235 1.01503 0.91386 0.80005 1.91471 1.94408 1.82578 1.43738 1.20557 1.09960 1.01403 0.90845 0.91559 0.93163 0.93917 0.92270 0.83886 0.85474 0.72968 0.79166 0.84782 0.85220 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.54 37.16 0.32 -2.91 16 2 C 0.00 0.00 1.57 -92.92 -0.15 -0.14 16 3 H 0.05 0.96 5.06 -51.93 -0.26 0.70 16 4 C -0.51 -13.87 8.90 -34.44 -0.31 -14.17 16 5 H 0.09 2.82 7.26 -52.48 -0.38 2.44 16 6 C 0.08 2.10 5.45 -17.82 -0.10 2.01 16 7 N -0.89 -26.18 13.96 55.43 0.77 -25.40 16 8 Si 0.88 20.27 24.29 -169.99 -4.13 16.14 16 9 H -0.28 -6.28 6.95 56.52 0.39 -5.89 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.27 -5.58 6.52 56.52 0.37 -5.21 16 12 C 0.54 11.28 6.72 -10.99 -0.07 11.21 16 13 O -0.49 -11.37 12.20 5.55 0.07 -11.30 16 14 N -0.55 -9.24 2.19 -114.75 -0.25 -9.49 16 15 C 0.11 1.36 5.16 -5.20 -0.03 1.33 16 16 C 0.46 6.09 6.75 36.00 0.24 6.33 16 17 O -0.49 -8.23 15.37 -18.75 -0.29 -8.52 16 18 O -0.52 -5.09 13.42 -39.25 -0.53 -5.61 16 19 C 0.20 3.23 6.48 -83.70 -0.54 2.69 16 20 C -0.18 -2.91 9.04 -39.38 -0.36 -3.27 16 21 C -0.07 -0.90 10.04 -39.62 -0.40 -1.30 16 22 C -0.19 -2.39 10.02 -39.48 -0.40 -2.79 16 23 C 0.12 1.63 7.30 -39.44 -0.29 1.34 16 24 F -0.14 -1.93 17.27 2.25 0.04 -1.89 16 25 C -0.21 -2.92 9.06 -39.33 -0.36 -3.28 16 26 H 0.07 1.48 8.12 -51.93 -0.42 1.05 16 27 H 0.05 1.06 3.54 -51.93 -0.18 0.87 16 28 H 0.04 0.80 4.46 -51.93 -0.23 0.57 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.14 1.73 5.81 -51.93 -0.30 1.43 16 31 H 0.13 1.18 6.71 -51.93 -0.35 0.83 16 32 H 0.41 2.44 9.10 45.56 0.41 2.86 16 33 H 0.19 3.62 4.55 -56.13 -0.26 3.36 16 34 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 36 H 0.13 1.56 6.21 -52.49 -0.33 1.23 16 LS Contribution 299.56 15.07 4.51 4.51 Total: -1.00 -33.13 299.56 -4.55 -37.68 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -2.32 Total: 6.83 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.43 Total: -2.95 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.52 Total: -34.89 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.75 Total: -25.43 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.13 Total: 16.14 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.13 -4.55 -37.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.746 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds