Wall clock time and date at job start Tue Mar 31 2020 07:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47238 * 2 1 4 4 C 1.50701 * 109.46906 * 119.99448 * 2 1 3 5 5 H 1.08004 * 119.99862 * 120.00032 * 4 2 1 6 6 C 1.37880 * 120.00251 * 300.00052 * 4 2 1 7 7 N 1.31512 * 119.99779 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 119.99624 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47264 * 90.00137 * 8 6 4 10 10 H 1.48510 * 109.46968 * 210.00076 * 8 6 4 11 11 H 1.48506 * 109.47466 * 329.99782 * 8 6 4 12 12 C 1.50701 * 109.47149 * 239.99538 * 2 1 3 13 13 O 1.21287 * 119.99708 * 264.26922 * 12 2 1 14 14 N 1.34776 * 119.99985 * 84.26863 * 12 2 1 15 15 C 1.46504 * 119.99978 * 3.63630 * 14 12 2 16 16 C 1.50693 * 109.46827 * 267.47688 * 15 14 12 17 17 O 1.20827 * 120.00288 * 0.02562 * 16 15 14 18 18 O 1.34229 * 120.00039 * 179.97438 * 16 15 14 19 19 C 1.39922 * 119.99932 * 183.62763 * 14 12 2 20 20 C 1.38910 * 120.05790 * 352.57440 * 19 14 12 21 21 C 1.38102 * 119.97791 * 180.29271 * 20 19 14 22 22 C 1.38265 * 120.09221 * 359.42911 * 21 20 19 23 23 C 1.38491 * 120.11899 * 0.27203 * 22 21 20 24 24 F 1.35098 * 119.98758 * 180.02562 * 23 22 21 25 25 C 1.38357 * 120.01761 * 0.02562 * 23 22 21 26 26 H 1.09000 * 109.47722 * 188.29074 * 1 2 3 27 27 H 1.09004 * 109.47211 * 308.29294 * 1 2 3 28 28 H 1.08998 * 109.47349 * 68.28794 * 1 2 3 29 29 H 0.97003 * 119.99295 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46946 * 27.48070 * 15 14 12 31 31 H 1.09000 * 109.46844 * 147.47770 * 15 14 12 32 32 H 0.96700 * 117.00311 * 179.97438 * 18 16 15 33 33 H 1.07998 * 120.01108 * 0.02562 * 20 19 14 34 34 H 1.08000 * 119.95230 * 179.70281 * 21 20 19 35 35 H 1.08005 * 119.93696 * 180.25461 * 22 21 20 36 36 H 1.07992 * 120.04254 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8588 3.5566 8 14 0.6247 1.2792 2.6540 9 1 -0.8029 0.8728 2.6997 10 1 0.9758 1.9954 3.9067 11 1 0.8469 2.1766 1.4918 12 6 2.0323 -0.7105 -1.2304 13 8 2.3333 -1.8840 -1.1726 14 7 2.1471 -0.0419 -2.3950 15 6 1.8598 1.3937 -2.4468 16 6 0.4154 1.6037 -2.8219 17 8 -0.3007 0.6518 -3.0246 18 8 -0.0759 2.8481 -2.9298 19 6 2.5407 -0.7190 -3.5545 20 6 2.9617 -2.0406 -3.4795 21 6 3.3557 -2.7054 -4.6241 22 6 3.3205 -2.0610 -5.8469 23 6 2.8956 -0.7453 -5.9271 24 9 2.8618 -0.1184 -7.1234 25 6 2.5057 -0.0728 -4.7825 26 1 -0.3634 -1.0169 0.1482 27 1 -0.3634 0.6368 0.8066 28 1 -0.3634 0.3802 -0.9547 29 1 1.9039 -0.5271 4.4376 30 1 2.0497 1.8378 -1.4697 31 1 2.5008 1.8658 -3.1913 32 1 -1.0080 2.9326 -3.1731 33 1 2.9851 -2.5468 -2.5258 34 1 3.6875 -3.7314 -4.5646 35 1 3.6253 -2.5845 -6.7410 36 1 2.1747 0.9532 -4.8446 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592212859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:34 Heat of formation + Delta-G solvation = -132.953267 kcal Electronic energy + Delta-G solvation = -24337.850475 eV Core-core repulsion = 20509.179777 eV Total energy + Delta-G solvation = -3828.670698 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.93838 -42.42678 -40.90305 -39.40110 -37.35617 -36.60084 -35.98000 -33.49147 -31.68023 -31.27575 -29.32898 -27.27648 -25.67796 -24.07311 -23.40012 -22.71073 -20.57652 -19.34698 -19.26118 -18.65993 -18.21756 -17.84781 -17.48956 -17.34536 -16.79062 -16.62596 -16.31291 -16.21547 -15.90813 -15.15566 -14.92412 -14.81851 -14.26826 -14.09816 -14.01600 -13.75960 -13.63368 -13.49135 -13.09891 -12.92950 -12.65951 -12.45432 -12.27196 -12.21525 -12.04368 -11.47756 -11.33612 -11.24897 -10.80327 -10.24819 -9.87291 -9.13091 -8.30869 -6.39922 0.12798 0.17035 1.07493 1.26090 1.32703 1.36429 1.48261 1.57259 2.13932 2.30889 2.67506 3.02020 3.19312 3.42205 3.71901 3.77039 3.99287 4.07173 4.15018 4.22328 4.28438 4.42066 4.42383 4.46604 4.57164 4.74016 4.92301 5.04850 5.11727 5.27665 5.40730 5.44311 5.48539 5.55725 5.93988 6.05914 6.27173 6.70882 6.91438 7.03522 7.24473 8.86051 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.005523 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.419586 B = 5068.087052 C = 6151.047742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.001 4.001 3 H 0.081 0.919 4 C -0.521 4.521 5 H 0.035 0.965 6 C 0.017 3.983 7 N -0.944 5.944 8 Si 0.946 3.054 9 H -0.270 1.270 10 H -0.293 1.293 11 H -0.222 1.222 12 C 0.536 3.464 13 O -0.530 6.530 14 N -0.542 5.542 15 C 0.091 3.909 16 C 0.465 3.535 17 O -0.531 6.531 18 O -0.499 6.499 19 C 0.176 3.824 20 C -0.203 4.203 21 C -0.063 4.063 22 C -0.177 4.177 23 C 0.114 3.886 24 F -0.139 7.139 25 C -0.197 4.197 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.269 0.731 30 H 0.155 0.845 31 H 0.169 0.831 32 H 0.431 0.569 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 9.516 -18.662 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 H 0.098 0.902 4 C -0.559 4.559 5 H 0.053 0.947 6 C -0.181 4.181 7 N -0.583 5.583 8 Si 0.770 3.230 9 H -0.196 1.196 10 H -0.220 1.220 11 H -0.145 1.145 12 C 0.329 3.671 13 O -0.406 6.406 14 N -0.265 5.265 15 C -0.033 4.033 16 C 0.306 3.694 17 O -0.420 6.420 18 O -0.312 6.312 19 C 0.081 3.919 20 C -0.223 4.223 21 C -0.082 4.082 22 C -0.196 4.196 23 C 0.094 3.906 24 F -0.117 7.117 25 C -0.219 4.219 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.172 0.828 31 H 0.186 0.814 32 H 0.294 0.706 33 H 0.178 0.822 34 H 0.175 0.825 35 H 0.178 0.822 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.991 8.662 -18.348 20.314 hybrid contribution -1.104 0.176 0.384 1.182 sum -2.095 8.837 -17.965 20.130 Atomic orbital electron populations 1.22140 0.95096 1.01681 1.01380 1.19366 0.94636 0.97977 0.90243 0.90199 1.20900 1.32270 1.12961 0.89744 0.94694 1.25894 0.96995 1.00457 0.94791 1.70042 1.47013 1.42459 0.98796 0.85907 0.78705 0.79591 0.78779 1.19591 1.22005 1.14465 1.21468 0.74819 0.86787 0.84063 1.90264 1.48256 1.18143 1.83930 1.45381 1.64113 1.09624 1.07344 1.21688 0.90955 0.80780 1.09830 1.23904 0.91628 0.81020 0.72844 1.90780 1.60830 1.43786 1.46618 1.84455 1.35946 1.29293 1.81552 1.17886 0.95952 0.92449 0.85604 1.22798 1.01921 0.94379 1.03202 1.21259 0.95703 1.00834 0.90390 1.21378 1.04704 0.93329 1.00207 1.17369 1.01355 0.91797 0.80042 1.91489 1.94346 1.82536 1.43348 1.20674 1.09025 1.02310 0.89863 0.94017 0.92521 0.91347 0.92168 0.82778 0.81396 0.70646 0.82240 0.82504 0.82160 0.83197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.95 8.54 71.98 0.61 -5.34 16 2 C 0.00 -0.04 1.57 -12.29 -0.02 -0.06 16 3 H 0.08 2.99 5.06 -2.39 -0.01 2.98 16 4 C -0.52 -29.48 8.90 25.60 0.23 -29.25 16 5 H 0.03 2.32 7.26 -2.91 -0.02 2.30 16 6 C 0.02 0.93 5.45 84.66 0.46 1.39 16 7 N -0.94 -58.13 13.96 21.45 0.30 -57.83 16 8 Si 0.95 40.66 24.29 68.60 1.67 42.33 16 9 H -0.27 -11.31 6.95 99.48 0.69 -10.62 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.22 -7.85 6.52 99.48 0.65 -7.20 16 12 C 0.54 22.86 6.72 87.66 0.59 23.45 16 13 O -0.53 -26.46 12.20 -3.05 -0.04 -26.50 16 14 N -0.54 -17.76 2.19 -635.34 -1.39 -19.15 16 15 C 0.09 2.03 5.16 85.63 0.44 2.47 16 16 C 0.46 10.69 6.75 71.23 0.48 11.17 16 17 O -0.53 -16.57 15.37 21.96 0.34 -16.23 16 18 O -0.50 -7.47 13.42 -51.40 -0.69 -8.16 16 19 C 0.18 5.59 6.48 38.15 0.25 5.83 16 20 C -0.20 -6.86 9.04 22.40 0.20 -6.66 16 21 C -0.06 -1.63 10.04 22.24 0.22 -1.41 16 22 C -0.18 -3.99 10.02 22.34 0.22 -3.76 16 23 C 0.11 2.80 7.30 22.36 0.16 2.96 16 24 F -0.14 -3.25 17.27 44.97 0.78 -2.47 16 25 C -0.20 -5.07 9.06 22.43 0.20 -4.87 16 26 H 0.04 1.87 8.12 -2.39 -0.02 1.85 16 27 H 0.06 2.22 3.54 -2.38 -0.01 2.21 16 28 H 0.07 2.44 4.46 -2.39 -0.01 2.43 16 29 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.15 3.10 5.81 -2.39 -0.01 3.08 16 31 H 0.17 2.34 6.71 -2.39 -0.02 2.32 16 32 H 0.43 3.13 9.10 -74.06 -0.67 2.45 16 33 H 0.16 6.54 4.55 -60.66 -0.28 6.26 16 34 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 35 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 36 H 0.15 3.06 6.21 -2.91 -0.02 3.04 16 Total: -1.00 -77.68 299.56 5.18 -72.50 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.16 Total: 19.58 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 4.06 Total: -4.06 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -1.09 Total: -76.98 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -0.39 Total: -50.89 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 1.67 Total: 42.33 kcal Total: -77.68 5.18 -72.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.454 kcal (2) G-P(sol) polarization free energy of solvation -77.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds