Wall clock time and date at job start Tue Mar 31 2020 07:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.50705 * 109.47194 * 239.99466 * 2 1 3 5 5 H 1.07999 * 119.99568 * 245.46763 * 4 2 1 6 6 C 1.37878 * 119.99576 * 65.46758 * 4 2 1 7 7 N 1.31513 * 120.00316 * 9.65345 * 6 4 2 8 8 Si 1.86806 * 119.99480 * 189.64737 * 6 4 2 9 9 H 1.48501 * 109.46598 * 84.99763 * 8 6 4 10 10 H 1.48502 * 109.46915 * 204.99628 * 8 6 4 11 11 H 1.48498 * 109.47382 * 324.99795 * 8 6 4 12 12 C 1.50705 * 109.47019 * 119.99811 * 2 1 3 13 13 O 1.21277 * 120.00266 * 119.99911 * 12 2 1 14 14 N 1.34776 * 119.99837 * 300.00122 * 12 2 1 15 15 C 1.46495 * 120.00391 * 180.02562 * 14 12 2 16 16 C 1.50691 * 109.47684 * 180.02562 * 15 14 12 17 17 C 1.38350 * 119.86009 * 259.97749 * 16 15 14 18 18 C 1.37929 * 120.18111 * 179.97438 * 17 16 15 19 19 C 1.39648 * 119.90024 * 359.97438 * 18 17 16 20 20 C 1.47734 * 120.13964 * 180.02562 * 19 18 17 21 21 O 1.21473 * 119.99798 * 0.02562 * 20 19 18 22 22 O 1.34702 * 120.00123 * 180.02562 * 20 19 18 23 23 C 1.39586 * 119.72444 * 359.75524 * 19 18 17 24 24 C 1.38200 * 119.81598 * 0.51828 * 23 19 18 25 25 F 1.35096 * 119.95208 * 179.73344 * 24 23 19 26 26 H 1.09005 * 109.47141 * 183.69438 * 1 2 3 27 27 H 1.08994 * 109.47476 * 303.69874 * 1 2 3 28 28 H 1.09002 * 109.46971 * 63.70081 * 1 2 3 29 29 H 0.97005 * 119.99639 * 180.02562 * 7 6 4 30 30 H 0.97008 * 119.99977 * 0.02562 * 14 12 2 31 31 H 1.08998 * 109.47386 * 59.99342 * 15 14 12 32 32 H 1.09002 * 109.46794 * 299.99802 * 15 14 12 33 33 H 1.08007 * 119.91209 * 0.02562 * 17 16 15 34 34 H 1.08005 * 120.05330 * 180.02562 * 18 17 16 35 35 H 0.96704 * 117.00224 * 180.02562 * 22 20 19 36 36 H 1.07998 * 120.09097 * 180.24624 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5785 -1.6372 -1.1336 6 6 1.7947 -0.1775 -2.4796 7 7 1.3012 1.0362 -2.5936 8 14 2.1738 -1.1793 -4.0100 9 1 1.0202 -2.0605 -4.3230 10 1 2.4213 -0.2633 -5.1524 11 1 3.3811 -2.0103 -3.7713 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1194 14 7 1.7067 -0.2499 2.4546 15 6 2.1953 -0.9400 3.6508 16 6 1.6924 -0.2301 4.8812 17 6 2.5252 0.6382 5.5643 18 6 2.0715 1.2920 6.6909 19 6 0.7678 1.0771 7.1428 20 6 0.2762 1.7749 8.3486 21 8 1.0064 2.5379 8.9488 22 8 -0.9817 1.5652 8.7824 23 6 -0.0708 0.2045 6.4473 24 6 0.3975 -0.4488 5.3231 25 9 -0.4101 -1.2980 4.6510 26 1 -0.3634 -1.0256 0.0662 27 1 -0.3634 0.5701 0.8549 28 1 -0.3633 0.4553 -0.9213 29 1 1.1337 1.4111 -3.4725 30 1 1.1486 0.5386 2.5435 31 1 3.2853 -0.9397 3.6507 32 1 1.8324 -1.9678 3.6510 33 1 3.5331 0.8053 5.2139 34 1 2.7233 1.9697 7.2223 35 1 -1.2583 2.0445 9.5754 36 1 -1.0815 0.0370 6.7893 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592213458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:28 Heat of formation + Delta-G solvation = -156.074215 kcal Electronic energy + Delta-G solvation = -22716.302354 eV Core-core repulsion = 18886.629056 eV Total energy + Delta-G solvation = -3829.673298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.12297 -40.82624 -39.35991 -38.50664 -36.53270 -34.68805 -33.69437 -31.92503 -31.00630 -30.37447 -27.09827 -25.10022 -23.91002 -23.31556 -22.28586 -21.23941 -19.48566 -18.77177 -18.12203 -16.73453 -16.68532 -16.32433 -16.20217 -16.11780 -15.76411 -15.21458 -14.99228 -14.46140 -14.35485 -14.17187 -13.68034 -13.32671 -13.02169 -12.80036 -12.61996 -12.30125 -12.01910 -11.95307 -11.76133 -11.56327 -11.04491 -11.01812 -10.85636 -10.63924 -10.30045 -9.95792 -9.61833 -9.19377 -9.03526 -8.56831 -8.50671 -8.35795 -6.05996 -4.04637 0.06853 0.75261 2.00753 2.50592 3.13301 3.35129 3.40430 3.46539 3.68769 3.80853 3.96992 4.23353 4.30403 4.48950 4.57130 4.68770 4.88973 5.18346 5.29360 5.34025 5.50852 5.61518 5.69189 5.80833 5.96139 6.01457 6.20208 6.33750 6.55033 6.78422 6.85512 6.94928 7.41764 7.42695 7.64509 7.96565 8.06105 8.40959 9.04126 9.18625 9.59480 11.04579 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.032704 B = 0.002941 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.963379 B = 9518.134583 C = 9576.282817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.029 3.971 3 H 0.060 0.940 4 C -0.504 4.504 5 H 0.074 0.926 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.522 3.478 13 O -0.543 6.543 14 N -0.743 5.743 15 C 0.155 3.845 16 C -0.095 4.095 17 C -0.084 4.084 18 C -0.065 4.065 19 C -0.102 4.102 20 C 0.531 3.469 21 O -0.509 6.509 22 O -0.510 6.510 23 C -0.099 4.099 24 C 0.105 3.895 25 F -0.124 7.124 26 H 0.033 0.967 27 H 0.016 0.984 28 H 0.075 0.925 29 H 0.261 0.739 30 H 0.397 0.603 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.417 0.583 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 2.337 22.100 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.008 3.992 3 H 0.078 0.922 4 C -0.542 4.542 5 H 0.092 0.908 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.312 3.688 13 O -0.418 6.418 14 N -0.398 5.398 15 C 0.031 3.969 16 C -0.096 4.096 17 C -0.103 4.103 18 C -0.083 4.083 19 C -0.104 4.104 20 C 0.375 3.625 21 O -0.398 6.398 22 O -0.322 6.322 23 C -0.118 4.118 24 C 0.085 3.915 25 F -0.102 7.102 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.231 0.769 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.276 0.724 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.053 1.681 21.636 21.915 hybrid contribution -0.552 0.123 -0.285 0.634 sum -3.605 1.804 21.351 21.728 Atomic orbital electron populations 1.21677 0.96886 0.99220 1.00637 1.18886 0.93695 0.97416 0.89203 0.92246 1.21095 1.35348 1.08714 0.89072 0.90770 1.24943 0.95275 0.94707 0.99104 1.69960 1.45500 1.13959 1.23905 0.86524 0.78929 0.80024 0.82095 1.20547 1.21397 1.19776 1.22028 0.78407 0.84208 0.84153 1.90538 1.37920 1.26795 1.86574 1.46339 1.55806 1.32763 1.04888 1.20072 0.99695 0.95937 0.81171 1.20487 0.92755 0.98248 0.98132 1.21038 1.00564 0.94570 0.94090 1.21334 0.93766 0.97846 0.95379 1.18819 0.95294 1.00947 0.95299 1.20727 0.79312 0.78817 0.83613 1.90913 1.56980 1.35148 1.56781 1.84557 1.31111 1.68125 1.48420 1.21415 1.01216 0.95448 0.93717 1.17427 0.88728 0.92724 0.92619 1.91586 1.71933 1.67673 1.78998 0.94755 0.96453 0.90567 0.92932 0.76928 0.90214 0.90490 0.83363 0.83539 0.72403 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.94 37.16 0.33 -2.50 16 2 C 0.03 0.72 2.50 -92.92 -0.23 0.48 16 3 H 0.06 1.52 8.08 -51.93 -0.42 1.11 16 4 C -0.50 -14.24 8.28 -34.44 -0.29 -14.53 16 5 H 0.07 2.22 6.79 -52.49 -0.36 1.86 16 6 C 0.06 1.69 5.17 -17.82 -0.09 1.60 16 7 N -0.89 -25.23 12.17 55.43 0.67 -24.55 16 8 Si 0.90 21.77 29.55 -169.99 -5.02 16.75 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.52 11.66 7.15 -10.98 -0.08 11.58 16 13 O -0.54 -13.91 15.47 5.56 0.09 -13.82 16 14 N -0.74 -12.50 5.45 -61.48 -0.34 -12.84 16 15 C 0.16 2.16 5.51 -5.20 -0.03 2.13 16 16 C -0.09 -1.04 5.26 -104.47 -0.55 -1.59 16 17 C -0.08 -0.75 9.65 -39.65 -0.38 -1.13 16 18 C -0.06 -0.56 9.59 -39.17 -0.38 -0.93 16 19 C -0.10 -0.93 5.87 -104.99 -0.62 -1.55 16 20 C 0.53 4.76 8.27 34.61 0.29 5.05 16 21 O -0.51 -5.83 17.13 -19.25 -0.33 -6.16 16 22 O -0.51 -3.16 12.68 -40.50 -0.51 -3.67 16 23 C -0.10 -0.91 9.60 -39.09 -0.38 -1.29 16 24 C 0.10 1.16 7.23 -39.48 -0.29 0.87 16 25 F -0.12 -1.60 16.64 2.25 0.04 -1.57 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.02 0.32 7.67 -51.93 -0.40 -0.08 16 28 H 0.08 1.88 6.83 -51.93 -0.35 1.52 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.40 5.95 7.95 -40.82 -0.32 5.62 16 31 H 0.08 1.07 8.00 -51.93 -0.42 0.66 16 32 H 0.08 1.16 7.94 -51.93 -0.41 0.75 16 33 H 0.15 1.07 8.03 -52.48 -0.42 0.64 16 34 H 0.15 1.10 7.65 -52.48 -0.40 0.70 16 35 H 0.42 0.70 9.11 45.56 0.42 1.12 16 36 H 0.15 1.18 7.61 -52.49 -0.40 0.78 16 LS Contribution 325.55 15.07 4.91 4.91 Total: -1.00 -33.85 325.55 -6.23 -40.08 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -3.05 Total: 2.67 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -2.68 Total: -1.80 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.34 Total: -37.39 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.76 Total: -23.65 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.85 -6.23 -40.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592213458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.998 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds