Wall clock time and date at job start Tue Mar 31 2020 07:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.50705 * 109.47194 * 239.99466 * 2 1 3 5 5 H 1.07999 * 119.99568 * 245.46763 * 4 2 1 6 6 C 1.37878 * 119.99576 * 65.46758 * 4 2 1 7 7 N 1.31513 * 120.00316 * 9.65345 * 6 4 2 8 8 Si 1.86806 * 119.99480 * 189.64737 * 6 4 2 9 9 H 1.48501 * 109.46598 * 84.99763 * 8 6 4 10 10 H 1.48502 * 109.46915 * 204.99628 * 8 6 4 11 11 H 1.48498 * 109.47382 * 324.99795 * 8 6 4 12 12 C 1.50705 * 109.47019 * 119.99811 * 2 1 3 13 13 O 1.21277 * 120.00266 * 119.99911 * 12 2 1 14 14 N 1.34776 * 119.99837 * 300.00122 * 12 2 1 15 15 C 1.46495 * 120.00391 * 180.02562 * 14 12 2 16 16 C 1.50691 * 109.47684 * 180.02562 * 15 14 12 17 17 C 1.38350 * 119.86009 * 259.97749 * 16 15 14 18 18 C 1.37929 * 120.18111 * 179.97438 * 17 16 15 19 19 C 1.39648 * 119.90024 * 359.97438 * 18 17 16 20 20 C 1.47734 * 120.13964 * 180.02562 * 19 18 17 21 21 O 1.21473 * 119.99798 * 0.02562 * 20 19 18 22 22 O 1.34702 * 120.00123 * 180.02562 * 20 19 18 23 23 C 1.39586 * 119.72444 * 359.75524 * 19 18 17 24 24 C 1.38200 * 119.81598 * 0.51828 * 23 19 18 25 25 F 1.35096 * 119.95208 * 179.73344 * 24 23 19 26 26 H 1.09005 * 109.47141 * 183.69438 * 1 2 3 27 27 H 1.08994 * 109.47476 * 303.69874 * 1 2 3 28 28 H 1.09002 * 109.46971 * 63.70081 * 1 2 3 29 29 H 0.97005 * 119.99639 * 180.02562 * 7 6 4 30 30 H 0.97008 * 119.99977 * 0.02562 * 14 12 2 31 31 H 1.08998 * 109.47386 * 59.99342 * 15 14 12 32 32 H 1.09002 * 109.46794 * 299.99802 * 15 14 12 33 33 H 1.08007 * 119.91209 * 0.02562 * 17 16 15 34 34 H 1.08005 * 120.05330 * 180.02562 * 18 17 16 35 35 H 0.96704 * 117.00224 * 180.02562 * 22 20 19 36 36 H 1.07998 * 120.09097 * 180.24624 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5785 -1.6372 -1.1336 6 6 1.7947 -0.1775 -2.4796 7 7 1.3012 1.0362 -2.5936 8 14 2.1738 -1.1793 -4.0100 9 1 1.0202 -2.0605 -4.3230 10 1 2.4213 -0.2633 -5.1524 11 1 3.3811 -2.0103 -3.7713 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1194 14 7 1.7067 -0.2499 2.4546 15 6 2.1953 -0.9400 3.6508 16 6 1.6924 -0.2301 4.8812 17 6 2.5252 0.6382 5.5643 18 6 2.0715 1.2920 6.6909 19 6 0.7678 1.0771 7.1428 20 6 0.2762 1.7749 8.3486 21 8 1.0064 2.5379 8.9488 22 8 -0.9817 1.5652 8.7824 23 6 -0.0708 0.2045 6.4473 24 6 0.3975 -0.4488 5.3231 25 9 -0.4101 -1.2980 4.6510 26 1 -0.3634 -1.0256 0.0662 27 1 -0.3634 0.5701 0.8549 28 1 -0.3633 0.4553 -0.9213 29 1 1.1337 1.4111 -3.4725 30 1 1.1486 0.5386 2.5435 31 1 3.2853 -0.9397 3.6507 32 1 1.8324 -1.9678 3.6510 33 1 3.5331 0.8053 5.2139 34 1 2.7233 1.9697 7.2223 35 1 -1.2583 2.0445 9.5754 36 1 -1.0815 0.0370 6.7893 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592213458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:27 Heat of formation + Delta-G solvation = -179.438939 kcal Electronic energy + Delta-G solvation = -22717.315524 eV Core-core repulsion = 18886.629056 eV Total energy + Delta-G solvation = -3830.686468 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.03350 -41.52668 -40.67466 -39.66696 -37.16007 -36.04094 -35.69711 -33.21828 -32.21501 -31.66972 -28.19032 -27.14284 -25.02000 -24.06154 -23.82606 -22.05475 -21.17854 -19.45094 -18.86724 -18.40185 -18.00300 -17.51524 -17.13303 -17.06338 -16.74724 -16.49579 -16.45699 -16.05782 -15.65983 -15.03408 -14.75082 -14.62520 -14.41831 -14.07865 -13.86606 -13.50013 -13.41369 -12.94707 -12.87471 -12.74089 -12.61737 -12.60215 -12.54684 -12.23854 -11.98736 -11.78480 -11.08314 -10.65133 -10.48937 -10.16750 -10.05118 -9.89778 -8.18525 -6.23623 -0.69593 0.01902 1.27733 1.41636 1.42582 1.53285 1.91597 1.92687 2.27374 2.44849 2.69605 3.03342 3.14321 3.33167 3.51278 3.84271 3.96508 4.22818 4.29653 4.41777 4.47645 4.67910 4.72485 4.73053 4.91143 4.92079 4.99063 5.11119 5.13385 5.47440 5.48436 5.50314 5.58277 5.72378 5.84186 6.17017 6.69555 6.86537 6.89939 7.39664 7.51516 8.91002 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.032704 B = 0.002941 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.963379 B = 9518.134583 C = 9576.282817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.024 3.976 3 H 0.047 0.953 4 C -0.530 4.530 5 H 0.049 0.951 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.951 3.049 9 H -0.273 1.273 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.525 3.475 13 O -0.583 6.583 14 N -0.722 5.722 15 C 0.157 3.843 16 C -0.102 4.102 17 C -0.074 4.074 18 C -0.059 4.059 19 C -0.104 4.104 20 C 0.539 3.461 21 O -0.537 6.537 22 O -0.503 6.503 23 C -0.090 4.090 24 C 0.091 3.909 25 F -0.139 7.139 26 H 0.029 0.971 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.265 0.735 30 H 0.408 0.592 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.437 0.563 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.316 3.046 23.527 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.003 3.997 3 H 0.065 0.935 4 C -0.569 4.569 5 H 0.068 0.932 6 C -0.177 4.177 7 N -0.551 5.551 8 Si 0.777 3.223 9 H -0.198 1.198 10 H -0.202 1.202 11 H -0.203 1.203 12 C 0.314 3.686 13 O -0.462 6.462 14 N -0.376 5.376 15 C 0.034 3.966 16 C -0.103 4.103 17 C -0.092 4.092 18 C -0.077 4.077 19 C -0.105 4.105 20 C 0.384 3.616 21 O -0.428 6.428 22 O -0.317 6.317 23 C -0.109 4.109 24 C 0.071 3.929 25 F -0.118 7.118 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.244 0.756 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.185 0.815 34 H 0.178 0.822 35 H 0.300 0.700 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.603 2.423 23.116 23.520 hybrid contribution -0.436 -0.045 -0.591 0.735 sum -4.038 2.379 22.525 23.008 Atomic orbital electron populations 1.21500 0.95291 0.99303 1.01069 1.18810 0.94959 0.96401 0.89578 0.93543 1.21254 1.36018 1.08388 0.91207 0.93237 1.25577 0.95104 0.95594 1.01446 1.70022 1.45704 1.14677 1.24670 0.85673 0.78600 0.78856 0.79163 1.19812 1.20181 1.20311 1.21517 0.78179 0.83604 0.85275 1.90516 1.39846 1.28477 1.87382 1.46019 1.54613 1.32561 1.04380 1.20120 1.00069 0.95447 0.81002 1.20227 0.93248 0.99379 0.97484 1.21197 1.01008 0.93376 0.93656 1.21515 0.93788 0.97465 0.94964 1.18984 0.95528 1.00635 0.95367 1.20622 0.79732 0.78100 0.83188 1.90912 1.57897 1.36409 1.57622 1.84516 1.29558 1.68126 1.49515 1.21483 1.01857 0.94717 0.92799 1.17597 0.88696 0.93214 0.93392 1.91548 1.72397 1.68345 1.79478 0.95198 0.92742 0.92839 0.92592 0.75592 0.89539 0.91738 0.81507 0.82202 0.70015 0.81547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.07 8.94 71.98 0.64 -4.43 16 2 C 0.02 1.18 2.50 -12.28 -0.03 1.15 16 3 H 0.05 2.42 8.08 -2.39 -0.02 2.40 16 4 C -0.53 -30.64 8.28 25.60 0.21 -30.43 16 5 H 0.05 3.06 6.79 -2.91 -0.02 3.04 16 6 C 0.02 1.25 5.17 84.65 0.44 1.69 16 7 N -0.91 -51.54 12.17 21.45 0.26 -51.28 16 8 Si 0.95 44.87 29.55 68.60 2.03 46.90 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 C 0.52 23.63 7.15 87.66 0.63 24.26 16 13 O -0.58 -30.54 15.47 -3.02 -0.05 -30.59 16 14 N -0.72 -23.78 5.45 -466.81 -2.54 -26.32 16 15 C 0.16 4.24 5.51 85.63 0.47 4.71 16 16 C -0.10 -2.06 5.26 -19.76 -0.10 -2.17 16 17 C -0.07 -1.13 9.65 22.22 0.21 -0.92 16 18 C -0.06 -0.86 9.59 22.54 0.22 -0.64 16 19 C -0.10 -1.63 5.87 -20.10 -0.12 -1.74 16 20 C 0.54 8.32 8.27 70.33 0.58 8.90 16 21 O -0.54 -11.17 17.13 19.92 0.34 -10.83 16 22 O -0.50 -4.79 12.68 -56.12 -0.71 -5.50 16 23 C -0.09 -1.45 9.60 22.59 0.22 -1.24 16 24 C 0.09 1.86 7.23 22.34 0.16 2.02 16 25 F -0.14 -3.49 16.64 44.97 0.75 -2.74 16 26 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.05 1.97 7.67 -2.39 -0.02 1.95 16 28 H 0.05 2.62 6.83 -2.39 -0.02 2.61 16 29 H 0.27 14.18 8.31 -92.70 -0.77 13.41 16 30 H 0.41 11.62 7.95 -92.70 -0.74 10.89 16 31 H 0.09 2.25 8.00 -2.39 -0.02 2.23 16 32 H 0.06 1.94 7.94 -2.39 -0.02 1.92 16 33 H 0.17 1.92 8.03 -2.91 -0.02 1.89 16 34 H 0.16 1.95 7.65 -2.91 -0.02 1.93 16 35 H 0.44 0.21 9.11 -74.05 -0.67 -0.46 16 36 H 0.17 2.16 7.61 -2.91 -0.02 2.14 16 Total: -1.00 -73.37 325.55 3.34 -70.03 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -0.26 Total: 9.18 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 3.53 Total: 1.16 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -2.28 Total: -77.60 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -0.42 Total: -46.92 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.75 Total: -2.74 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -73.37 3.34 -70.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592213458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.410 kcal (2) G-P(sol) polarization free energy of solvation -73.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds