Wall clock time and date at job start Tue Mar 31 2020 07:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.46899 * 2 1 4 4 C 1.50701 * 109.47479 * 240.00110 * 2 1 3 5 5 H 1.07993 * 120.00353 * 239.99958 * 4 2 1 6 6 C 1.37881 * 119.99738 * 59.99659 * 4 2 1 7 7 N 1.31516 * 119.99779 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99847 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47085 * 90.00117 * 8 6 4 10 10 H 1.48500 * 109.46965 * 210.00072 * 8 6 4 11 11 H 1.48496 * 109.47154 * 329.99852 * 8 6 4 12 12 N 1.46499 * 109.47259 * 119.99669 * 2 1 3 13 13 C 1.46509 * 119.99495 * 60.00343 * 12 2 1 14 14 C 1.34773 * 120.00192 * 239.99833 * 12 2 1 15 15 O 1.21542 * 120.00290 * 4.88103 * 14 12 2 16 16 C 1.47876 * 119.99873 * 184.87229 * 14 12 2 17 17 C 1.39686 * 120.05675 * 320.63842 * 16 14 12 18 18 C 1.38282 * 120.12457 * 179.97438 * 17 16 14 19 19 F 1.35103 * 119.87547 * 180.02562 * 18 17 16 20 20 C 1.38311 * 120.25185 * 359.97438 * 18 17 16 21 21 C 1.39688 * 120.11176 * 359.97438 * 20 18 17 22 22 C 1.47742 * 120.06557 * 179.97438 * 21 20 18 23 23 O 1.21465 * 119.99843 * 180.02562 * 22 21 20 24 24 O 1.34708 * 120.00081 * 0.02562 * 22 21 20 25 25 C 1.39277 * 120.05531 * 140.86504 * 16 14 12 26 26 H 1.09001 * 109.47276 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47125 * 299.99965 * 1 2 3 28 28 H 1.08999 * 109.47464 * 59.99593 * 1 2 3 29 29 H 0.97005 * 119.99712 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.46579 * 265.71080 * 13 12 2 31 31 H 1.08992 * 109.47014 * 25.71120 * 13 12 2 32 32 H 1.08998 * 109.46520 * 145.71249 * 13 12 2 33 33 H 1.08000 * 119.93780 * 0.02562 * 17 16 14 34 34 H 1.07995 * 119.94306 * 179.97438 * 20 18 17 35 35 H 0.96699 * 117.00001 * 179.97438 * 24 22 21 36 36 H 1.08000 * 120.12109 * 0.02562 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3214 -1.1202 -4.0080 9 1 1.3429 -2.1616 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6294 -1.7581 -3.7123 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0139 1.1508 1.9379 16 6 3.3746 -0.7602 3.2337 17 6 2.6210 -1.7252 3.9060 18 6 3.1636 -2.4041 4.9817 19 9 2.4304 -3.3369 5.6279 20 6 4.4544 -2.1326 5.3977 21 6 5.2175 -1.1704 4.7321 22 6 6.5960 -0.8808 5.1778 23 8 7.2583 -0.0435 4.5984 24 8 7.1184 -1.5453 6.2267 25 6 4.6730 -0.4783 3.6516 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.7094 1.1619 -3.4844 30 1 0.7801 -2.1445 2.0633 31 1 1.4552 -2.5775 0.4742 32 1 2.4946 -2.6009 1.9189 33 1 1.6130 -1.9421 3.5847 34 1 4.8730 -2.6655 6.2386 35 1 8.0241 -1.3218 6.4810 36 1 5.2576 0.2699 3.1371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222380.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:31 Heat of formation + Delta-G solvation = -133.113838 kcal Electronic energy + Delta-G solvation = -23369.677779 eV Core-core repulsion = 19541.000118 eV Total energy + Delta-G solvation = -3828.677661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.13485 -40.75010 -39.77031 -37.91061 -36.36431 -35.53752 -33.22806 -31.82617 -30.84103 -29.27323 -26.56019 -25.30132 -25.09158 -24.14759 -21.67639 -21.19967 -19.27864 -18.27708 -17.65174 -17.01059 -16.54830 -16.34964 -16.19901 -16.07310 -15.70520 -15.52185 -15.34135 -14.49102 -14.26642 -13.74927 -13.54232 -13.16586 -12.70800 -12.60741 -12.41268 -12.15967 -12.04698 -11.84945 -11.66408 -11.36197 -11.12575 -10.94891 -10.87868 -10.78170 -10.33904 -10.23291 -9.47633 -9.28436 -9.19421 -9.04287 -8.49353 -7.76423 -6.13476 -4.22189 0.22320 0.72998 2.11329 2.60335 3.03324 3.23361 3.30970 3.33188 3.51446 3.69692 3.93333 4.33338 4.43446 4.53356 4.76484 4.85799 4.98334 5.18248 5.27764 5.47613 5.60029 5.63379 5.82102 5.87560 5.99189 6.15954 6.24844 6.41107 6.68064 6.75044 6.97028 7.27025 7.41704 7.58066 7.63649 7.92637 8.09592 8.34853 8.68452 8.86582 9.44508 10.91899 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.004063 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.408161 B = 6889.381558 C = 7496.428613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.066 0.934 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.580 5.580 13 C 0.074 3.926 14 C 0.545 3.455 15 O -0.536 6.536 16 C -0.094 4.094 17 C -0.094 4.094 18 C 0.081 3.919 19 F -0.132 7.132 20 C -0.085 4.085 21 C -0.109 4.109 22 C 0.531 3.469 23 O -0.502 6.502 24 O -0.512 6.512 25 C -0.014 4.014 26 H 0.030 0.970 27 H 0.012 0.988 28 H 0.095 0.905 29 H 0.264 0.736 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.416 0.584 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.431 -8.698 16.306 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.084 0.916 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.310 5.310 13 C -0.070 4.070 14 C 0.331 3.669 15 O -0.414 6.414 16 C -0.098 4.098 17 C -0.113 4.113 18 C 0.062 3.938 19 F -0.111 7.111 20 C -0.105 4.105 21 C -0.110 4.110 22 C 0.375 3.625 23 O -0.390 6.390 24 O -0.324 6.324 25 C -0.033 4.033 26 H 0.050 0.950 27 H 0.032 0.968 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.175 0.825 34 H 0.170 0.830 35 H 0.276 0.724 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.184 -7.848 15.782 18.372 hybrid contribution 0.718 -0.658 -0.543 1.115 sum 5.901 -8.507 15.239 18.424 Atomic orbital electron populations 1.22093 0.97843 0.99540 1.01036 1.19055 0.91146 0.94587 0.79431 0.91614 1.21294 1.32187 1.13224 0.90164 0.92101 1.24887 0.94840 0.94924 0.98995 1.69877 1.36137 1.22422 1.23922 0.86471 0.79210 0.79301 0.82292 1.20562 1.21039 1.19889 1.48228 1.47860 1.11665 1.23246 1.21981 0.98638 0.83359 1.03028 1.17986 0.80003 0.86855 0.82081 1.90783 1.60926 1.14618 1.75091 1.20039 0.94564 0.97214 0.97983 1.22049 1.02104 0.93819 0.93355 1.17316 0.90404 0.91800 0.94315 1.91543 1.76577 1.62730 1.80222 1.21482 0.92319 0.96800 0.99850 1.18658 0.91790 1.01176 0.99412 1.20614 0.86865 0.77861 0.77183 1.90945 1.61250 1.32007 1.54782 1.84532 1.36566 1.63648 1.47673 1.21404 0.93661 0.95776 0.92452 0.95043 0.96847 0.88646 0.92563 0.93385 0.89407 0.92323 0.82457 0.82956 0.72449 0.82749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.97 37.15 0.33 -3.05 16 2 C 0.26 6.36 2.63 -69.09 -0.18 6.17 16 3 H 0.07 1.89 6.91 -51.93 -0.36 1.53 16 4 C -0.53 -13.87 7.96 -34.44 -0.27 -14.15 16 5 H 0.06 1.56 7.41 -52.49 -0.39 1.17 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.49 11.32 55.43 0.63 -23.87 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.58 -11.86 2.75 -176.37 -0.49 -12.34 16 13 C 0.07 1.15 7.83 59.85 0.47 1.62 16 14 C 0.55 11.02 7.35 -12.32 -0.09 10.93 16 15 O -0.54 -12.94 16.25 5.33 0.09 -12.86 16 16 C -0.09 -1.46 5.23 -105.03 -0.55 -2.01 16 17 C -0.09 -1.18 7.53 -39.02 -0.29 -1.47 16 18 C 0.08 0.90 7.28 -39.54 -0.29 0.61 16 19 F -0.13 -1.44 17.26 2.25 0.04 -1.40 16 20 C -0.09 -0.87 9.59 -39.01 -0.37 -1.25 16 21 C -0.11 -1.31 5.87 -105.04 -0.62 -1.92 16 22 C 0.53 6.07 8.27 34.61 0.29 6.36 16 23 O -0.50 -7.34 17.12 -19.24 -0.33 -7.67 16 24 O -0.51 -3.87 12.67 -40.51 -0.51 -4.38 16 25 C -0.01 -0.20 9.17 -38.77 -0.36 -0.56 16 26 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.05 0.63 6.90 -51.93 -0.36 0.28 16 31 H 0.09 1.47 7.09 -51.93 -0.37 1.10 16 32 H 0.06 0.79 5.81 -51.93 -0.30 0.49 16 33 H 0.16 1.80 5.31 -52.49 -0.28 1.52 16 34 H 0.15 1.21 7.60 -52.49 -0.40 0.81 16 35 H 0.42 1.26 9.11 45.56 0.42 1.68 16 36 H 0.15 2.45 7.63 -52.49 -0.40 2.04 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -32.05 315.16 -5.58 -37.63 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -2.71 Total: 1.61 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -2.03 Total: 2.96 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.14 Total: -36.21 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.76 Total: -24.91 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.05 -5.58 -37.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222380.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.481 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds