Wall clock time and date at job start Tue Mar 31 2020 07:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47362 * 2 1 4 4 C 1.50706 * 109.47167 * 119.99760 * 2 1 3 5 5 H 1.08000 * 119.99901 * 94.94258 * 4 2 1 6 6 C 1.37875 * 119.99828 * 274.94604 * 4 2 1 7 7 N 1.31515 * 119.99858 * 174.96965 * 6 4 2 8 8 Si 1.86798 * 120.00368 * 354.97048 * 6 4 2 9 9 H 1.48503 * 109.47101 * 275.01596 * 8 6 4 10 10 H 1.48498 * 109.47042 * 35.01455 * 8 6 4 11 11 H 1.48500 * 109.47438 * 155.01517 * 8 6 4 12 12 N 1.46501 * 109.47197 * 239.99969 * 2 1 3 13 13 C 1.46505 * 119.99651 * 299.99995 * 12 2 1 14 14 C 1.34775 * 120.00353 * 120.00301 * 12 2 1 15 15 O 1.21559 * 119.99675 * 5.71966 * 14 12 2 16 16 C 1.47862 * 120.00269 * 185.72623 * 14 12 2 17 17 C 1.39685 * 120.05705 * 35.04498 * 16 14 12 18 18 C 1.38285 * 120.13213 * 180.02562 * 17 16 14 19 19 F 1.35094 * 119.87856 * 179.97438 * 18 17 16 20 20 C 1.38314 * 120.24405 * 0.02562 * 18 17 16 21 21 C 1.39684 * 120.11401 * 0.02562 * 20 18 17 22 22 C 1.47745 * 120.06479 * 179.97438 * 21 20 18 23 23 O 1.21476 * 119.99911 * 179.97438 * 22 21 20 24 24 O 1.34710 * 120.00146 * 359.97438 * 22 21 20 25 25 C 1.39275 * 120.05801 * 214.76999 * 16 14 12 26 26 H 1.09001 * 109.47342 * 55.01342 * 1 2 3 27 27 H 1.08994 * 109.47444 * 175.01047 * 1 2 3 28 28 H 1.09005 * 109.47413 * 295.01178 * 1 2 3 29 29 H 0.96993 * 120.00551 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.46691 * 94.72846 * 13 12 2 31 31 H 1.09003 * 109.46646 * 214.72388 * 13 12 2 32 32 H 1.08999 * 109.47107 * 334.72402 * 13 12 2 33 33 H 1.08003 * 119.93358 * 359.97438 * 17 16 14 34 34 H 1.08000 * 119.94253 * 179.97438 * 20 18 17 35 35 H 0.96700 * 117.00076 * 180.02562 * 24 22 21 36 36 H 1.08004 * 120.12281 * 359.97438 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.2883 -1.7585 1.1823 6 6 2.1650 -0.0222 2.4179 7 7 2.5082 -0.6625 3.5142 8 14 1.8575 1.8195 2.4695 9 1 3.0960 2.5394 2.0781 10 1 0.7646 2.1655 1.5254 11 1 1.4673 2.2179 3.8458 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.1728 1.0934 -1.8414 16 6 3.1814 -0.6906 -3.3509 17 6 2.2904 -1.5524 -3.9947 18 6 2.6520 -2.1662 -5.1799 19 9 1.7864 -2.9991 -5.7979 20 6 3.8971 -1.9311 -5.7345 21 6 4.7966 -1.0720 -5.0988 22 6 6.1266 -0.8222 -5.6919 23 8 6.9077 -0.0745 -5.1383 24 8 6.4730 -1.4236 -6.8464 25 6 4.4340 -0.4448 -3.9080 26 1 -0.3634 0.5892 -0.8419 27 1 -0.3634 -1.0237 -0.0894 28 1 -0.3634 0.4345 0.9313 29 1 2.6012 -0.1786 4.3496 30 1 0.7848 -2.1447 -2.0696 31 1 2.4975 -2.6030 -1.9119 32 1 1.4475 -2.5755 -0.4748 33 1 1.3173 -1.7405 -3.5654 34 1 4.1747 -2.4134 -6.6601 35 1 7.3537 -1.2296 -7.1955 36 1 5.1241 0.2247 -3.4160 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:34 Heat of formation + Delta-G solvation = -131.690398 kcal Electronic energy + Delta-G solvation = -23433.929520 eV Core-core repulsion = 19605.313584 eV Total energy + Delta-G solvation = -3828.615936 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.17073 -40.78589 -39.84725 -38.00041 -36.38715 -35.67839 -33.11717 -31.92948 -30.89300 -30.04081 -26.64356 -25.32092 -25.16055 -24.22524 -21.71739 -21.19646 -19.21669 -18.30672 -17.78100 -17.29436 -16.62494 -16.52014 -16.21670 -16.11940 -15.78194 -15.64913 -15.50124 -14.48970 -14.15328 -13.74088 -13.60711 -13.27457 -12.86872 -12.56279 -12.47727 -12.31889 -12.15697 -12.08372 -11.90114 -11.73729 -11.35149 -11.17603 -10.96652 -10.76158 -10.47499 -9.85106 -9.57994 -9.38351 -9.29385 -9.09579 -8.64759 -7.87898 -6.20633 -4.23107 0.17802 0.67695 2.06982 2.57443 2.96258 3.26960 3.34822 3.40577 3.45759 3.60842 3.87534 4.33663 4.36098 4.48785 4.72457 4.81208 4.90676 5.16197 5.23861 5.43906 5.54977 5.57253 5.74867 5.83466 5.94693 6.13510 6.16153 6.24118 6.31774 6.38256 6.49300 6.82684 6.96435 7.29782 7.53348 7.55590 7.95886 8.36849 8.64766 8.80142 9.40618 10.91299 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.004302 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.048481 B = 6507.327998 C = 7335.539905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.226 3.774 3 H 0.063 0.937 4 C -0.530 4.530 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.891 5.891 8 Si 0.871 3.129 9 H -0.271 1.271 10 H -0.261 1.261 11 H -0.287 1.287 12 N -0.577 5.577 13 C 0.075 3.925 14 C 0.547 3.453 15 O -0.537 6.537 16 C -0.096 4.096 17 C -0.093 4.093 18 C 0.081 3.919 19 F -0.132 7.132 20 C -0.083 4.083 21 C -0.109 4.109 22 C 0.531 3.469 23 O -0.501 6.501 24 O -0.512 6.512 25 C -0.013 4.013 26 H 0.026 0.974 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.267 0.733 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.417 0.583 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.032 -4.831 -19.874 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.126 3.874 3 H 0.081 0.919 4 C -0.568 4.568 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.527 5.527 8 Si 0.697 3.303 9 H -0.196 1.196 10 H -0.185 1.185 11 H -0.213 1.213 12 N -0.307 5.307 13 C -0.068 4.068 14 C 0.333 3.667 15 O -0.415 6.415 16 C -0.100 4.100 17 C -0.112 4.112 18 C 0.062 3.938 19 F -0.110 7.110 20 C -0.103 4.103 21 C -0.110 4.110 22 C 0.375 3.625 23 O -0.389 6.389 24 O -0.324 6.324 25 C -0.032 4.032 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.176 0.824 34 H 0.171 0.829 35 H 0.276 0.724 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.034 -4.135 -19.203 19.670 hybrid contribution 0.304 0.724 -0.187 0.807 sum 1.339 -3.411 -19.390 19.733 Atomic orbital electron populations 1.22312 0.98077 1.00451 1.00041 1.19337 0.90770 0.94865 0.82448 0.91897 1.21081 1.45413 0.98485 0.91820 0.90253 1.24888 0.93829 0.98270 0.95334 1.69876 1.46815 1.36355 0.99675 0.86986 0.79938 0.86049 0.77310 1.19604 1.18519 1.21253 1.48091 1.48268 1.11658 1.22684 1.21966 0.98866 0.82862 1.03109 1.18025 0.79749 0.86060 0.82894 1.90781 1.54574 1.18877 1.77278 1.19967 0.94507 0.98348 0.97130 1.22069 1.01737 0.94106 0.93322 1.17311 0.88698 0.94478 0.93295 1.91544 1.68463 1.69066 1.81946 1.21504 0.91569 0.96814 1.00378 1.18665 0.92332 1.02760 0.97264 1.20611 0.86928 0.76756 0.78253 1.90951 1.51938 1.34793 1.61265 1.84530 1.41265 1.67976 1.38633 1.21436 0.95240 0.94682 0.91819 0.95468 0.93140 0.92047 0.92311 0.93372 0.92145 0.89144 0.82356 0.82899 0.72411 0.82668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.89 37.15 0.33 -2.68 16 2 C 0.23 5.23 2.18 -69.08 -0.15 5.08 16 3 H 0.06 1.60 4.68 -51.93 -0.24 1.36 16 4 C -0.53 -14.12 8.66 -34.44 -0.30 -14.42 16 5 H 0.08 2.24 6.97 -52.49 -0.37 1.87 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 7 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 8 Si 0.87 21.42 26.19 -169.99 -4.45 16.97 16 9 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.26 -6.07 6.14 56.52 0.35 -5.73 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 N -0.58 -11.34 2.75 -176.37 -0.49 -11.83 16 13 C 0.08 1.14 7.74 59.85 0.46 1.60 16 14 C 0.55 10.69 7.36 -12.32 -0.09 10.60 16 15 O -0.54 -12.56 16.16 5.31 0.09 -12.47 16 16 C -0.10 -1.44 5.17 -105.03 -0.54 -1.98 16 17 C -0.09 -1.12 7.78 -39.02 -0.30 -1.42 16 18 C 0.08 0.87 7.28 -39.54 -0.29 0.58 16 19 F -0.13 -1.39 17.26 2.25 0.04 -1.35 16 20 C -0.08 -0.82 9.59 -39.01 -0.37 -1.20 16 21 C -0.11 -1.27 5.87 -105.04 -0.62 -1.89 16 22 C 0.53 5.94 8.27 34.62 0.29 6.23 16 23 O -0.50 -7.24 17.13 -19.25 -0.33 -7.57 16 24 O -0.51 -3.76 12.67 -40.52 -0.51 -4.27 16 25 C -0.01 -0.18 9.15 -38.77 -0.35 -0.53 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.91 7.51 -51.93 -0.39 0.52 16 28 H 0.06 1.28 6.72 -51.93 -0.35 0.93 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.05 0.58 6.38 -51.93 -0.33 0.25 16 31 H 0.06 0.81 6.49 -51.93 -0.34 0.47 16 32 H 0.09 1.50 6.70 -51.93 -0.35 1.15 16 33 H 0.16 1.71 5.21 -52.48 -0.27 1.44 16 34 H 0.15 1.16 7.60 -52.49 -0.40 0.77 16 35 H 0.42 1.19 9.11 45.56 0.42 1.60 16 36 H 0.16 2.41 7.58 -52.48 -0.40 2.01 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -33.51 311.27 -4.86 -38.37 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -2.63 Total: 0.84 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -2.04 Total: 2.12 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.29 Total: -37.33 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.76 Total: -24.32 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.45 Total: 16.97 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.51 -4.86 -38.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.325 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds