Wall clock time and date at job start Tue Mar 31 2020 07:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46949 * 2 1 4 4 C 1.50702 * 109.46818 * 240.00115 * 2 1 3 5 5 H 1.07994 * 119.99766 * 239.99953 * 4 2 1 6 6 C 1.37878 * 119.99914 * 60.00175 * 4 2 1 7 7 N 1.31511 * 120.00018 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47192 * 59.99720 * 8 6 4 10 10 H 1.48498 * 109.47038 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47168 * 299.99631 * 8 6 4 12 12 C 1.50699 * 109.47087 * 120.00243 * 2 1 3 13 13 O 1.21279 * 120.00091 * 120.00467 * 12 2 1 14 14 N 1.34768 * 119.99874 * 299.99543 * 12 2 1 15 15 C 1.46504 * 120.00164 * 180.02562 * 14 12 2 16 16 H 1.08997 * 109.47196 * 34.99840 * 15 14 12 17 17 C 1.50703 * 109.46865 * 275.00276 * 15 14 12 18 18 O 1.20829 * 119.99887 * 359.97438 * 17 15 14 19 19 O 1.34237 * 120.00088 * 179.97438 * 17 15 14 20 20 C 1.50698 * 109.47513 * 155.00206 * 15 14 12 21 21 C 1.38244 * 119.97167 * 219.99790 * 20 15 14 22 22 C 1.38205 * 120.02298 * 180.02562 * 21 20 15 23 23 C 1.38459 * 119.97412 * 0.24026 * 22 21 20 24 24 F 1.35099 * 120.02759 * 179.72396 * 23 22 21 25 25 C 1.38466 * 119.94836 * 359.48301 * 23 22 21 26 26 C 1.38196 * 119.97140 * 0.53984 * 25 23 22 27 27 H 1.08994 * 109.47613 * 59.99619 * 1 2 3 28 28 H 1.09001 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47013 * 299.99712 * 1 2 3 30 30 H 0.97008 * 119.99823 * 180.02562 * 7 6 4 31 31 H 0.97001 * 120.00426 * 0.02562 * 14 12 2 32 32 H 0.96696 * 116.99913 * 179.97438 * 19 17 15 33 33 H 1.07999 * 119.98898 * 0.02589 * 21 20 15 34 34 H 1.08002 * 120.00949 * 179.97438 * 22 21 20 35 35 H 1.07997 * 120.00962 * 180.25357 * 25 23 22 36 36 H 1.08000 * 119.98525 * 179.74601 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8268 -0.4198 -5.2205 11 1 3.8074 -1.1189 -4.0079 12 6 2.0323 -0.7105 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1956 -0.9403 3.6507 16 1 3.1949 -1.3322 3.4612 17 6 1.2661 -2.0772 3.9895 18 8 0.2949 -2.2887 3.3026 19 8 1.5173 -2.8548 5.0545 20 6 2.2461 0.0281 4.8042 21 6 3.3059 -0.0089 5.6911 22 6 3.3531 0.8784 6.7497 23 6 2.3358 1.8013 6.9246 24 9 2.3780 2.6654 7.9622 25 6 1.2778 1.8412 6.0323 26 6 1.2326 0.9526 4.9748 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7081 1.1610 -3.4844 31 1 1.1489 0.5385 2.5435 32 1 0.8926 -3.5712 5.2321 33 1 4.0973 -0.7315 5.5567 34 1 4.1809 0.8490 7.4427 35 1 0.4859 2.5633 6.1654 36 1 0.4053 0.9809 4.2811 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603119189.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:48 Heat of formation + Delta-G solvation = -147.410683 kcal Electronic energy + Delta-G solvation = -23429.341959 eV Core-core repulsion = 19600.044340 eV Total energy + Delta-G solvation = -3829.297619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.15015 -40.75097 -39.16303 -38.58341 -36.04808 -34.62412 -33.76575 -31.60244 -31.27888 -30.08167 -27.19252 -25.12355 -23.55400 -22.96504 -22.54730 -20.86953 -19.58012 -18.20625 -17.88933 -17.00149 -16.73030 -16.60847 -16.15699 -15.83821 -15.51874 -15.27498 -14.83190 -14.50732 -13.92635 -13.85292 -13.80698 -13.48950 -13.23216 -12.72485 -12.55559 -12.33197 -12.02084 -11.53814 -11.42786 -11.28487 -10.99503 -10.76988 -10.69003 -10.64302 -10.25992 -9.97487 -9.41041 -9.02955 -8.99912 -8.81404 -8.69631 -8.34473 -6.03069 -4.06416 0.74494 0.93484 2.27144 2.79618 3.20833 3.36991 3.39376 3.45082 3.66082 3.86879 3.96620 4.27094 4.41669 4.47517 4.59621 4.93318 4.99714 5.24247 5.29990 5.32548 5.59910 5.60154 5.81336 5.89693 6.05244 6.17747 6.50756 6.55582 6.63070 6.71479 6.86130 6.94583 7.46687 7.75108 7.91136 7.95170 8.08115 8.34391 9.00854 9.07037 9.58723 11.04481 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.022203 B = 0.003836 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.776518 B = 7297.363068 C = 7833.289832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.033 3.967 3 H 0.055 0.945 4 C -0.503 4.503 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.529 3.471 13 O -0.539 6.539 14 N -0.724 5.724 15 C 0.201 3.799 16 H 0.132 0.868 17 C 0.466 3.534 18 O -0.491 6.491 19 O -0.517 6.517 20 C -0.100 4.100 21 C -0.061 4.061 22 C -0.151 4.151 23 C 0.103 3.897 24 F -0.140 7.140 25 C -0.149 4.149 26 C -0.078 4.078 27 H 0.093 0.907 28 H 0.034 0.966 29 H 0.011 0.989 30 H 0.261 0.739 31 H 0.403 0.597 32 H 0.407 0.593 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 1.472 19.915 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.012 3.988 3 H 0.073 0.927 4 C -0.541 4.541 5 H 0.092 0.908 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.320 3.680 13 O -0.414 6.414 14 N -0.380 5.380 15 C 0.093 3.907 16 H 0.150 0.850 17 C 0.305 3.695 18 O -0.376 6.376 19 O -0.328 6.328 20 C -0.101 4.101 21 C -0.080 4.080 22 C -0.170 4.170 23 C 0.083 3.917 24 F -0.118 7.118 25 C -0.168 4.168 26 C -0.096 4.096 27 H 0.112 0.888 28 H 0.053 0.947 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.239 0.761 32 H 0.265 0.735 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.638 1.149 19.398 19.500 hybrid contribution -0.509 -0.421 -0.423 0.784 sum 1.129 0.728 18.975 19.022 Atomic orbital electron populations 1.21731 0.96165 1.00163 1.00822 1.18882 0.94367 0.96823 0.88688 0.92717 1.21083 1.31214 1.12879 0.88930 0.90817 1.24936 0.95064 0.95049 0.99086 1.69861 1.36925 1.23045 1.23683 0.86495 0.79250 0.79737 0.81587 1.20204 1.21361 1.20171 1.22186 0.77700 0.84073 0.84072 1.90537 1.37814 1.26574 1.86431 1.46285 1.55930 1.31885 1.03931 1.18960 0.98179 0.88225 0.85348 0.85038 1.24056 0.85380 0.82795 0.77308 1.90764 1.28463 1.69276 1.49082 1.84518 1.56711 1.44517 1.47089 1.19588 0.96392 0.97579 0.96556 1.20885 0.97216 0.97367 0.92498 1.21129 0.99170 0.96485 1.00235 1.17780 0.96594 0.90685 0.86595 1.91508 1.96469 1.67940 1.55904 1.21109 0.98777 1.01482 0.95388 1.20910 0.98121 0.93701 0.96890 0.88800 0.94726 0.96983 0.92873 0.76079 0.73483 0.84141 0.84269 0.84255 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.87 37.16 0.33 -2.73 16 2 C 0.03 0.83 2.64 -92.92 -0.25 0.58 16 3 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 4 C -0.50 -14.24 8.37 -34.44 -0.29 -14.53 16 5 H 0.07 2.20 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.04 11.32 55.43 0.63 -24.41 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.53 11.88 6.98 -10.99 -0.08 11.81 16 13 O -0.54 -13.72 15.12 5.56 0.08 -13.64 16 14 N -0.72 -12.32 4.45 -56.07 -0.25 -12.57 16 15 C 0.20 2.88 2.68 -70.23 -0.19 2.69 16 16 H 0.13 1.91 7.44 -51.93 -0.39 1.52 16 17 C 0.47 7.04 7.64 36.01 0.28 7.31 16 18 O -0.49 -9.29 17.08 -18.75 -0.32 -9.61 16 19 O -0.52 -5.81 13.34 -39.28 -0.52 -6.33 16 20 C -0.10 -1.12 4.88 -104.62 -0.51 -1.63 16 21 C -0.06 -0.58 9.67 -39.59 -0.38 -0.96 16 22 C -0.15 -1.34 10.03 -39.51 -0.40 -1.74 16 23 C 0.10 1.01 7.30 -39.42 -0.29 0.72 16 24 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 25 C -0.15 -1.41 10.03 -39.51 -0.40 -1.80 16 26 C -0.08 -0.81 9.05 -39.59 -0.36 -1.17 16 27 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.40 5.96 6.28 -40.82 -0.26 5.70 16 32 H 0.41 2.93 9.10 45.56 0.41 3.35 16 33 H 0.14 1.07 8.04 -52.49 -0.42 0.65 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.14 1.33 6.91 -52.49 -0.36 0.97 16 LS Contribution 321.74 15.07 4.85 4.85 Total: -1.00 -34.03 321.74 -6.04 -40.07 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -2.90 Total: 6.13 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.62 Total: 0.11 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.38 Total: -36.99 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.76 Total: -29.57 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.03 -6.04 -40.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603119189.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.346 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds