Wall clock time and date at job start Tue Mar 31 2020 07:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46949 * 2 1 4 4 C 1.50702 * 109.46818 * 240.00115 * 2 1 3 5 5 H 1.07994 * 119.99766 * 239.99953 * 4 2 1 6 6 C 1.37878 * 119.99914 * 60.00175 * 4 2 1 7 7 N 1.31511 * 120.00018 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47192 * 59.99720 * 8 6 4 10 10 H 1.48498 * 109.47038 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47168 * 299.99631 * 8 6 4 12 12 C 1.50699 * 109.47087 * 120.00243 * 2 1 3 13 13 O 1.21279 * 120.00091 * 120.00467 * 12 2 1 14 14 N 1.34768 * 119.99874 * 299.99543 * 12 2 1 15 15 C 1.46504 * 120.00164 * 180.02562 * 14 12 2 16 16 H 1.08997 * 109.47196 * 34.99840 * 15 14 12 17 17 C 1.50703 * 109.46865 * 275.00276 * 15 14 12 18 18 O 1.20829 * 119.99887 * 359.97438 * 17 15 14 19 19 O 1.34237 * 120.00088 * 179.97438 * 17 15 14 20 20 C 1.50698 * 109.47513 * 155.00206 * 15 14 12 21 21 C 1.38244 * 119.97167 * 219.99790 * 20 15 14 22 22 C 1.38205 * 120.02298 * 180.02562 * 21 20 15 23 23 C 1.38459 * 119.97412 * 0.24026 * 22 21 20 24 24 F 1.35099 * 120.02759 * 179.72396 * 23 22 21 25 25 C 1.38466 * 119.94836 * 359.48301 * 23 22 21 26 26 C 1.38196 * 119.97140 * 0.53984 * 25 23 22 27 27 H 1.08994 * 109.47613 * 59.99619 * 1 2 3 28 28 H 1.09001 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47013 * 299.99712 * 1 2 3 30 30 H 0.97008 * 119.99823 * 180.02562 * 7 6 4 31 31 H 0.97001 * 120.00426 * 0.02562 * 14 12 2 32 32 H 0.96696 * 116.99913 * 179.97438 * 19 17 15 33 33 H 1.07999 * 119.98898 * 0.02589 * 21 20 15 34 34 H 1.08002 * 120.00949 * 179.97438 * 22 21 20 35 35 H 1.07997 * 120.00962 * 180.25357 * 25 23 22 36 36 H 1.08000 * 119.98525 * 179.74601 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8268 -0.4198 -5.2205 11 1 3.8074 -1.1189 -4.0079 12 6 2.0323 -0.7105 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1956 -0.9403 3.6507 16 1 3.1949 -1.3322 3.4612 17 6 1.2661 -2.0772 3.9895 18 8 0.2949 -2.2887 3.3026 19 8 1.5173 -2.8548 5.0545 20 6 2.2461 0.0281 4.8042 21 6 3.3059 -0.0089 5.6911 22 6 3.3531 0.8784 6.7497 23 6 2.3358 1.8013 6.9246 24 9 2.3780 2.6654 7.9622 25 6 1.2778 1.8412 6.0323 26 6 1.2326 0.9526 4.9748 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7081 1.1610 -3.4844 31 1 1.1489 0.5385 2.5435 32 1 0.8926 -3.5712 5.2321 33 1 4.0973 -0.7315 5.5567 34 1 4.1809 0.8490 7.4427 35 1 0.4859 2.5633 6.1654 36 1 0.4053 0.9809 4.2811 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603119189.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:47 Heat of formation + Delta-G solvation = -170.487838 kcal Electronic energy + Delta-G solvation = -23430.342659 eV Core-core repulsion = 19600.044340 eV Total energy + Delta-G solvation = -3830.298319 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.92141 -41.94757 -40.33602 -39.90428 -37.19726 -35.99726 -35.77007 -33.00649 -32.21807 -31.59081 -28.32049 -27.19392 -24.80763 -24.08542 -23.65399 -22.04435 -21.17118 -19.27648 -18.80515 -18.42729 -18.22960 -17.87454 -17.46429 -16.90958 -16.65684 -16.58618 -16.33668 -15.74872 -15.58409 -15.03912 -14.64917 -14.56991 -14.48849 -14.31110 -13.84054 -13.48762 -13.30932 -13.02302 -12.91860 -12.69980 -12.60926 -12.54558 -12.23232 -12.03208 -12.00095 -11.92884 -11.06086 -10.68446 -10.44396 -10.31682 -10.12317 -9.70460 -8.14486 -6.24864 -0.05710 0.21693 1.09374 1.42063 1.43898 1.51009 1.55397 2.00887 2.27704 2.45696 2.73009 3.15250 3.17844 3.32519 3.66071 3.90556 4.01665 4.23110 4.26110 4.29627 4.48799 4.73576 4.82620 4.91496 4.93492 5.01065 5.08860 5.14812 5.22816 5.39898 5.48388 5.53027 5.74232 5.81315 5.90533 6.18070 6.56653 6.82896 6.90501 7.33221 7.45068 8.91274 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.022203 B = 0.003836 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.776518 B = 7297.363068 C = 7833.289832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.027 3.973 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.050 0.950 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.955 3.045 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.273 1.273 12 C 0.532 3.468 13 O -0.576 6.576 14 N -0.707 5.707 15 C 0.200 3.800 16 H 0.131 0.869 17 C 0.472 3.528 18 O -0.536 6.536 19 O -0.500 6.500 20 C -0.110 4.110 21 C -0.059 4.059 22 C -0.146 4.146 23 C 0.095 3.905 24 F -0.143 7.143 25 C -0.148 4.148 26 C -0.085 4.085 27 H 0.073 0.927 28 H 0.016 0.984 29 H 0.049 0.951 30 H 0.265 0.735 31 H 0.414 0.586 32 H 0.427 0.573 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.156 0.844 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 1.861 21.454 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.005 3.995 3 H 0.068 0.932 4 C -0.569 4.569 5 H 0.068 0.932 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.199 1.199 12 C 0.323 3.677 13 O -0.454 6.454 14 N -0.362 5.362 15 C 0.093 3.907 16 H 0.149 0.851 17 C 0.313 3.687 18 O -0.425 6.425 19 O -0.313 6.313 20 C -0.111 4.111 21 C -0.077 4.077 22 C -0.164 4.164 23 C 0.076 3.924 24 F -0.122 7.122 25 C -0.167 4.167 26 C -0.103 4.103 27 H 0.092 0.908 28 H 0.035 0.965 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.253 0.747 32 H 0.289 0.711 33 H 0.177 0.823 34 H 0.181 0.819 35 H 0.174 0.826 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.981 1.559 21.003 21.154 hybrid contribution -0.613 -0.530 -0.754 1.107 sum 1.369 1.029 20.248 20.321 Atomic orbital electron populations 1.21534 0.95234 0.99112 1.01613 1.18812 0.95103 0.96325 0.89214 0.93247 1.21247 1.31825 1.12836 0.91030 0.93179 1.25581 0.95151 0.95727 1.01383 1.69937 1.37011 1.23526 1.24405 0.85654 0.78808 0.78590 0.78839 1.20463 1.19936 1.19877 1.21632 0.77471 0.83438 0.85204 1.90509 1.39632 1.28064 1.87241 1.45888 1.54981 1.31869 1.03495 1.19089 0.97641 0.88873 0.85099 0.85131 1.24074 0.84529 0.82834 0.77280 1.90757 1.30416 1.70563 1.50756 1.84457 1.56997 1.44675 1.45172 1.19406 0.97853 0.97705 0.96167 1.21079 0.96935 0.97691 0.91979 1.21371 0.99430 0.95483 1.00132 1.17994 0.97043 0.90857 0.86554 1.91503 1.96506 1.68116 1.56075 1.21264 0.99190 1.01412 0.94803 1.20967 0.98099 0.93850 0.97383 0.90829 0.96523 0.93252 0.92557 0.74730 0.71131 0.82299 0.81907 0.82613 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.87 71.98 0.64 -4.86 16 2 C 0.03 1.34 2.64 -12.28 -0.03 1.30 16 3 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 4 C -0.53 -30.81 8.37 25.60 0.21 -30.60 16 5 H 0.05 3.09 6.75 -2.91 -0.02 3.07 16 6 C 0.02 1.17 5.30 84.66 0.45 1.62 16 7 N -0.91 -51.01 11.32 21.45 0.24 -50.77 16 8 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 9 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 12 C 0.53 24.23 6.98 87.66 0.61 24.84 16 13 O -0.58 -30.02 15.12 -3.03 -0.05 -30.06 16 14 N -0.71 -23.73 4.45 -449.70 -2.00 -25.73 16 15 C 0.20 5.53 2.68 43.50 0.12 5.64 16 16 H 0.13 3.68 7.44 -2.39 -0.02 3.66 16 17 C 0.47 13.78 7.64 71.24 0.54 14.32 16 18 O -0.54 -20.15 17.08 21.95 0.37 -19.77 16 19 O -0.50 -10.21 13.34 -51.48 -0.69 -10.90 16 20 C -0.11 -2.26 4.88 -19.86 -0.10 -2.36 16 21 C -0.06 -0.95 9.67 22.26 0.22 -0.73 16 22 C -0.15 -2.14 10.03 22.31 0.22 -1.92 16 23 C 0.09 1.63 7.30 22.38 0.16 1.79 16 24 F -0.14 -2.66 17.27 44.97 0.78 -1.88 16 25 C -0.15 -2.47 10.03 22.31 0.22 -2.24 16 26 C -0.08 -1.60 9.05 22.26 0.20 -1.39 16 27 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 1.89 7.56 -2.39 -0.02 1.87 16 30 H 0.27 14.11 8.31 -92.70 -0.77 13.34 16 31 H 0.41 11.84 6.28 -92.71 -0.58 11.26 16 32 H 0.43 5.22 9.10 -74.06 -0.67 4.54 16 33 H 0.16 1.94 8.04 -2.91 -0.02 1.91 16 34 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.14 2.48 6.91 -2.91 -0.02 2.46 16 Total: -1.00 -74.01 321.74 4.05 -69.96 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -0.11 Total: 16.73 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 3.47 Total: 5.41 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -1.76 Total: -76.50 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: -0.36 Total: -60.74 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -74.01 4.05 -69.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603119189.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.527 kcal (2) G-P(sol) polarization free energy of solvation -74.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds