Wall clock time and date at job start Tue Mar 31 2020 07:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.21282 * 119.99865 * 240.00203 * 12 2 1 14 14 N 1.34774 * 120.00164 * 59.99708 * 12 2 1 15 15 C 1.46496 * 120.00339 * 180.02562 * 14 12 2 16 16 H 1.09006 * 109.47123 * 34.99772 * 15 14 12 17 17 C 1.50700 * 109.47268 * 275.00186 * 15 14 12 18 18 O 1.20827 * 119.99569 * 359.97438 * 17 15 14 19 19 O 1.34223 * 120.00220 * 179.97438 * 17 15 14 20 20 C 1.50701 * 109.47358 * 154.99758 * 15 14 12 21 21 C 1.38240 * 119.97487 * 39.72600 * 20 15 14 22 22 C 1.38196 * 120.02810 * 179.76351 * 21 20 15 23 23 C 1.38455 * 119.97277 * 0.51548 * 22 21 20 24 24 F 1.35092 * 120.02799 * 179.76615 * 23 22 21 25 25 C 1.38463 * 119.94550 * 359.73554 * 23 22 21 26 26 C 1.38188 * 119.98002 * 0.02562 * 25 23 22 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 31 31 H 0.97005 * 119.99795 * 359.97438 * 14 12 2 32 32 H 0.96702 * 117.00323 * 179.97438 * 19 17 15 33 33 H 1.08003 * 119.98293 * 0.02562 * 21 20 15 34 34 H 1.08002 * 120.01441 * 180.25244 * 22 21 20 35 35 H 1.08002 * 120.00743 * 179.97438 * 25 23 22 36 36 H 1.08004 * 119.99430 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 6 2.0324 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1946 -0.9406 -3.6508 16 1 2.2310 -2.0135 -3.4614 17 6 3.5762 -0.4433 -3.9898 18 8 4.0995 0.4018 -3.3028 19 8 4.2256 -0.9392 -5.0547 20 6 1.2647 -0.6654 -4.8043 21 6 0.7262 0.5968 -4.9714 22 6 -0.1229 0.8517 -6.0316 23 6 -0.4426 -0.1605 -6.9205 24 9 -1.2762 0.0862 -7.9545 25 6 0.0932 -1.4257 -6.7491 26 6 0.9459 -1.6770 -5.6911 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7096 1.1617 3.4844 31 1 1.1487 0.5386 -2.5436 32 1 5.1093 -0.5891 -5.2323 33 1 0.9725 1.3852 -4.2755 34 1 -0.5402 1.8389 -6.1642 35 1 -0.1558 -2.2161 -7.4417 36 1 1.3644 -2.6637 -5.5575 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603119190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:50 Heat of formation + Delta-G solvation = -147.607617 kcal Electronic energy + Delta-G solvation = -23411.317693 eV Core-core repulsion = 19582.011535 eV Total energy + Delta-G solvation = -3829.306158 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.15011 -40.75688 -39.16926 -38.58561 -36.06048 -34.62646 -33.77616 -31.60204 -31.27964 -30.09594 -27.19397 -25.14574 -23.55350 -22.99122 -22.53635 -20.87347 -19.58864 -18.22297 -17.88166 -16.96812 -16.77366 -16.62529 -16.10794 -15.83616 -15.55107 -15.27748 -14.84223 -14.50983 -14.03561 -13.84968 -13.76547 -13.51197 -13.08720 -12.82060 -12.51388 -12.37544 -12.02345 -11.56764 -11.43782 -11.27818 -11.02106 -10.77012 -10.72496 -10.67218 -10.26455 -9.97757 -9.40884 -9.05661 -8.98393 -8.81570 -8.68879 -8.35654 -6.03577 -4.06735 0.74680 0.93716 2.26113 2.79379 3.20953 3.34487 3.40049 3.46873 3.64577 3.87914 3.97079 4.27039 4.41741 4.47379 4.59761 4.93460 4.99846 5.24008 5.29512 5.32101 5.60024 5.60240 5.81492 5.89847 6.04759 6.17587 6.50094 6.55551 6.58501 6.70562 6.80123 6.90125 7.44621 7.72733 7.90739 7.94187 8.07056 8.33935 9.01050 9.06930 9.58518 11.04148 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.003902 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.879313 B = 7174.557113 C = 7897.843071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.032 3.968 3 H 0.056 0.944 4 C -0.502 4.502 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.529 3.471 13 O -0.539 6.539 14 N -0.724 5.724 15 C 0.201 3.799 16 H 0.132 0.868 17 C 0.467 3.533 18 O -0.493 6.493 19 O -0.517 6.517 20 C -0.100 4.100 21 C -0.078 4.078 22 C -0.149 4.149 23 C 0.103 3.897 24 F -0.140 7.140 25 C -0.151 4.151 26 C -0.061 4.061 27 H 0.094 0.906 28 H 0.032 0.968 29 H 0.012 0.988 30 H 0.261 0.739 31 H 0.403 0.597 32 H 0.407 0.593 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.204 -0.953 -19.936 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.011 3.989 3 H 0.074 0.926 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.320 3.680 13 O -0.413 6.413 14 N -0.380 5.380 15 C 0.093 3.907 16 H 0.150 0.850 17 C 0.306 3.694 18 O -0.378 6.378 19 O -0.328 6.328 20 C -0.101 4.101 21 C -0.096 4.096 22 C -0.168 4.168 23 C 0.084 3.916 24 F -0.118 7.118 25 C -0.170 4.170 26 C -0.080 4.080 27 H 0.113 0.887 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.239 0.761 32 H 0.265 0.735 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.044 -1.475 -19.421 19.584 hybrid contribution 0.557 0.355 0.438 0.792 sum -1.487 -1.120 -18.983 19.075 Atomic orbital electron populations 1.21760 0.96311 0.99958 1.01070 1.18889 0.94236 0.97023 0.88723 0.92590 1.21121 1.31081 1.12887 0.88910 0.90754 1.24939 0.95060 0.95071 0.99103 1.69864 1.37032 1.23050 1.23584 0.86439 0.78462 0.80233 0.82009 1.20664 1.21278 1.19737 1.22176 0.77783 0.83970 0.84062 1.90538 1.37482 1.26894 1.86428 1.46281 1.54698 1.33128 1.03929 1.18956 0.85729 1.00674 0.85353 0.85029 1.24055 0.88760 0.79353 0.77282 1.90758 1.67499 1.30373 1.49150 1.84516 1.35096 1.66121 1.47054 1.19587 0.99281 0.94679 0.96563 1.20904 0.95405 0.96461 0.96835 1.21106 1.00742 0.99518 0.95394 1.17775 0.92507 0.94639 0.86723 1.91505 1.69194 1.94935 1.56185 1.21125 0.99781 0.95875 1.00241 1.20883 0.95338 0.99241 0.92497 0.88694 0.94833 0.96873 0.92927 0.76072 0.73459 0.84582 0.84256 0.84274 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.87 37.16 0.33 -2.65 16 2 C 0.03 0.80 2.64 -92.92 -0.25 0.55 16 3 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 4 C -0.50 -14.21 8.37 -34.44 -0.29 -14.50 16 5 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.05 11.32 55.43 0.63 -24.42 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.53 11.90 6.98 -10.98 -0.08 11.83 16 13 O -0.54 -13.73 15.12 5.56 0.08 -13.65 16 14 N -0.72 -12.33 4.45 -56.07 -0.25 -12.58 16 15 C 0.20 2.88 2.68 -70.24 -0.19 2.69 16 16 H 0.13 1.91 7.44 -51.93 -0.39 1.53 16 17 C 0.47 7.04 7.64 36.01 0.28 7.31 16 18 O -0.49 -9.31 17.08 -18.75 -0.32 -9.63 16 19 O -0.52 -5.78 13.34 -39.24 -0.52 -6.30 16 20 C -0.10 -1.12 4.88 -104.62 -0.51 -1.64 16 21 C -0.08 -0.81 9.05 -39.60 -0.36 -1.16 16 22 C -0.15 -1.41 10.03 -39.52 -0.40 -1.81 16 23 C 0.10 1.02 7.30 -39.42 -0.29 0.73 16 24 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 25 C -0.15 -1.35 10.03 -39.52 -0.40 -1.74 16 26 C -0.06 -0.58 9.67 -39.60 -0.38 -0.96 16 27 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.40 5.96 6.27 -40.82 -0.26 5.70 16 32 H 0.41 2.90 9.10 45.56 0.41 3.32 16 33 H 0.14 1.32 6.90 -52.48 -0.36 0.96 16 34 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.14 1.07 8.04 -52.48 -0.42 0.65 16 LS Contribution 321.71 15.07 4.85 4.85 Total: -1.00 -34.05 321.71 -6.04 -40.09 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -2.90 Total: 6.06 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -2.62 Total: 0.20 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.38 Total: -37.00 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.76 Total: -29.58 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.05 -6.04 -40.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603119190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.519 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds