Wall clock time and date at job start Tue Mar 31 2020 07:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.21282 * 119.99865 * 240.00203 * 12 2 1 14 14 N 1.34774 * 120.00164 * 59.99708 * 12 2 1 15 15 C 1.46496 * 120.00339 * 180.02562 * 14 12 2 16 16 H 1.09006 * 109.47123 * 34.99772 * 15 14 12 17 17 C 1.50700 * 109.47268 * 275.00186 * 15 14 12 18 18 O 1.20827 * 119.99569 * 359.97438 * 17 15 14 19 19 O 1.34223 * 120.00220 * 179.97438 * 17 15 14 20 20 C 1.50701 * 109.47358 * 154.99758 * 15 14 12 21 21 C 1.38240 * 119.97487 * 39.72600 * 20 15 14 22 22 C 1.38196 * 120.02810 * 179.76351 * 21 20 15 23 23 C 1.38455 * 119.97277 * 0.51548 * 22 21 20 24 24 F 1.35092 * 120.02799 * 179.76615 * 23 22 21 25 25 C 1.38463 * 119.94550 * 359.73554 * 23 22 21 26 26 C 1.38188 * 119.98002 * 0.02562 * 25 23 22 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 31 31 H 0.97005 * 119.99795 * 359.97438 * 14 12 2 32 32 H 0.96702 * 117.00323 * 179.97438 * 19 17 15 33 33 H 1.08003 * 119.98293 * 0.02562 * 21 20 15 34 34 H 1.08002 * 120.01441 * 180.25244 * 22 21 20 35 35 H 1.08002 * 120.00743 * 179.97438 * 25 23 22 36 36 H 1.08004 * 119.99430 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 6 2.0324 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1946 -0.9406 -3.6508 16 1 2.2310 -2.0135 -3.4614 17 6 3.5762 -0.4433 -3.9898 18 8 4.0995 0.4018 -3.3028 19 8 4.2256 -0.9392 -5.0547 20 6 1.2647 -0.6654 -4.8043 21 6 0.7262 0.5968 -4.9714 22 6 -0.1229 0.8517 -6.0316 23 6 -0.4426 -0.1605 -6.9205 24 9 -1.2762 0.0862 -7.9545 25 6 0.0932 -1.4257 -6.7491 26 6 0.9459 -1.6770 -5.6911 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7096 1.1617 3.4844 31 1 1.1487 0.5386 -2.5436 32 1 5.1093 -0.5891 -5.2323 33 1 0.9725 1.3852 -4.2755 34 1 -0.5402 1.8389 -6.1642 35 1 -0.1558 -2.2161 -7.4417 36 1 1.3644 -2.6637 -5.5575 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603119190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:49 Heat of formation + Delta-G solvation = -170.785670 kcal Electronic energy + Delta-G solvation = -23412.322769 eV Core-core repulsion = 19582.011535 eV Total energy + Delta-G solvation = -3830.311234 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.92066 -41.95531 -40.34680 -39.90387 -37.21184 -35.99938 -35.77092 -33.00494 -32.21773 -31.59078 -28.32166 -27.18313 -24.80975 -24.09384 -23.63886 -22.04879 -21.17839 -19.29087 -18.79571 -18.46757 -18.14413 -17.92365 -17.46751 -16.92298 -16.65446 -16.58357 -16.33656 -15.86195 -15.54019 -14.98883 -14.67032 -14.52961 -14.45203 -14.32753 -13.90316 -13.46096 -13.30393 -13.01586 -12.92513 -12.69953 -12.60351 -12.55923 -12.20987 -12.03409 -12.00532 -11.93924 -11.04836 -10.69849 -10.42971 -10.32486 -10.12123 -9.70356 -8.14810 -6.25258 -0.05545 0.21954 1.08059 1.41474 1.42160 1.52233 1.56163 1.98891 2.28514 2.45515 2.73088 3.15088 3.17792 3.32502 3.66143 3.90711 4.01549 4.22682 4.25805 4.29512 4.49193 4.75714 4.82614 4.91627 4.94601 5.02238 5.09053 5.15033 5.22880 5.39833 5.49235 5.52139 5.74827 5.81516 5.93073 6.19306 6.56433 6.82999 6.89435 7.33056 7.44855 8.91140 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.003902 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.879313 B = 7174.557113 C = 7897.843071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.025 3.975 3 H 0.039 0.961 4 C -0.530 4.530 5 H 0.050 0.950 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.276 1.276 12 C 0.533 3.467 13 O -0.576 6.576 14 N -0.707 5.707 15 C 0.200 3.800 16 H 0.132 0.868 17 C 0.473 3.527 18 O -0.539 6.539 19 O -0.500 6.500 20 C -0.110 4.110 21 C -0.085 4.085 22 C -0.148 4.148 23 C 0.095 3.905 24 F -0.143 7.143 25 C -0.146 4.146 26 C -0.058 4.058 27 H 0.071 0.929 28 H 0.028 0.972 29 H 0.053 0.947 30 H 0.265 0.735 31 H 0.414 0.586 32 H 0.427 0.573 33 H 0.138 0.862 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.875 -1.301 -21.507 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.004 3.996 3 H 0.057 0.943 4 C -0.568 4.568 5 H 0.068 0.932 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.201 1.201 12 C 0.323 3.677 13 O -0.455 6.455 14 N -0.362 5.362 15 C 0.093 3.907 16 H 0.149 0.851 17 C 0.314 3.686 18 O -0.428 6.428 19 O -0.312 6.312 20 C -0.111 4.111 21 C -0.103 4.103 22 C -0.167 4.167 23 C 0.076 3.924 24 F -0.122 7.122 25 C -0.164 4.164 26 C -0.077 4.077 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.253 0.747 32 H 0.289 0.711 33 H 0.156 0.844 34 H 0.174 0.826 35 H 0.181 0.819 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.730 -1.801 -21.059 21.311 hybrid contribution 0.777 0.476 0.778 1.198 sum -1.952 -1.325 -20.280 20.417 Atomic orbital electron populations 1.21562 0.94482 0.99828 1.01860 1.18815 0.95741 0.95802 0.89232 0.94342 1.21277 1.31699 1.12827 0.91036 0.93189 1.25588 0.95149 0.95752 1.01408 1.69946 1.37127 1.23527 1.24332 0.85592 0.78274 0.78873 0.79131 1.20320 1.19829 1.20131 1.21627 0.77482 0.83396 0.85196 1.90510 1.39204 1.28492 1.87245 1.45885 1.53790 1.33068 1.03492 1.19089 0.86405 1.00087 0.85114 0.85102 1.24086 0.88870 0.78430 0.77247 1.90752 1.68576 1.32602 1.50861 1.84454 1.36355 1.65293 1.45116 1.19401 0.99751 0.95787 0.96172 1.20960 0.95724 0.96262 0.97339 1.21259 1.00237 1.00362 0.94798 1.17988 0.92532 0.95227 0.86677 1.91501 1.69338 1.95003 1.56355 1.21367 0.98788 0.96122 1.00131 1.21075 0.95043 0.99568 0.91972 0.91046 0.95275 0.92825 0.92578 0.74724 0.71100 0.84382 0.82618 0.81912 0.82302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.87 71.98 0.64 -4.68 16 2 C 0.03 1.27 2.64 -12.29 -0.03 1.24 16 3 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.53 -30.83 8.37 25.60 0.21 -30.61 16 5 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.91 -51.17 11.32 21.45 0.24 -50.93 16 8 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 9 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 C 0.53 24.30 6.98 87.66 0.61 24.91 16 13 O -0.58 -30.08 15.12 -3.04 -0.05 -30.12 16 14 N -0.71 -23.78 4.45 -449.68 -2.00 -25.78 16 15 C 0.20 5.54 2.68 43.50 0.12 5.65 16 16 H 0.13 3.69 7.44 -2.38 -0.02 3.67 16 17 C 0.47 13.85 7.64 71.24 0.54 14.39 16 18 O -0.54 -20.41 17.08 21.96 0.38 -20.03 16 19 O -0.50 -10.20 13.34 -51.35 -0.69 -10.88 16 20 C -0.11 -2.26 4.88 -19.86 -0.10 -2.35 16 21 C -0.08 -1.59 9.05 22.26 0.20 -1.39 16 22 C -0.15 -2.46 10.03 22.31 0.22 -2.23 16 23 C 0.09 1.63 7.30 22.38 0.16 1.79 16 24 F -0.14 -2.65 17.27 44.97 0.78 -1.87 16 25 C -0.15 -2.13 10.03 22.31 0.22 -1.91 16 26 C -0.06 -0.94 9.67 22.26 0.22 -0.73 16 27 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.89 7.56 -2.38 -0.02 1.87 16 30 H 0.26 14.10 8.31 -92.71 -0.77 13.32 16 31 H 0.41 11.86 6.27 -92.70 -0.58 11.28 16 32 H 0.43 5.20 9.10 -74.06 -0.67 4.53 16 33 H 0.14 2.48 6.90 -2.91 -0.02 2.46 16 34 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 36 H 0.16 1.93 8.04 -2.91 -0.02 1.91 16 Total: -1.00 -74.47 321.71 4.06 -70.42 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -0.10 Total: 16.44 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 3.47 Total: 5.67 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -1.76 Total: -76.71 kcal Atomic # 8 Polarization: -60.68 SS G_CDS: -0.36 Total: -61.04 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -74.47 4.06 -70.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603119190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.370 kcal (2) G-P(sol) polarization free energy of solvation -74.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds