Wall clock time and date at job start Tue Mar 31 2020 06:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47113 * 2 1 4 4 H 1.08993 * 109.46958 * 54.99785 * 3 2 1 5 5 C 1.50695 * 109.47101 * 175.00190 * 3 2 1 6 6 H 1.08001 * 120.00615 * 120.00049 * 5 3 2 7 7 C 1.37887 * 119.99852 * 299.99859 * 5 3 2 8 8 N 1.31515 * 120.00005 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99939 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.46851 * 90.00119 * 9 7 5 11 11 H 1.48499 * 109.47102 * 210.00365 * 9 7 5 12 12 H 1.48506 * 109.47256 * 330.00192 * 9 7 5 13 13 N 1.46504 * 109.46816 * 294.99830 * 3 2 1 14 14 C 1.39025 * 119.99839 * 85.00165 * 13 3 2 15 15 N 1.32344 * 119.64252 * 359.97438 * 14 13 3 16 16 C 1.31894 * 121.95726 * 179.97438 * 15 14 13 17 17 C 1.37987 * 121.00503 * 0.02562 * 16 15 14 18 18 C 1.40020 * 119.16835 * 359.97438 * 17 16 15 19 19 C 1.48060 * 120.88689 * 180.02562 * 18 17 16 20 20 O 1.21426 * 120.00187 * 180.02562 * 19 18 17 21 21 O 1.34668 * 120.00260 * 0.02562 * 19 18 17 22 22 C 1.39083 * 119.64251 * 179.97438 * 14 13 3 23 23 N 1.48018 * 120.53379 * 359.97438 * 22 14 13 24 24 O 1.21798 * 120.00601 * 270.02248 * 23 22 14 25 25 O 1.21805 * 119.99636 * 90.02563 * 23 22 14 26 26 H 1.09000 * 109.47207 * 299.99995 * 1 2 3 27 27 H 1.08991 * 109.47131 * 60.00486 * 1 2 3 28 28 H 1.09009 * 109.46968 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46935 * 239.99275 * 2 1 3 30 30 H 1.09005 * 109.47086 * 120.00085 * 2 1 3 31 31 H 0.96996 * 119.99682 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99824 * 265.00094 * 13 3 2 33 33 H 1.08002 * 119.49506 * 179.97438 * 16 15 14 34 34 H 1.08002 * 120.41819 * 179.97438 * 17 16 15 35 35 H 0.96692 * 117.00572 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8803 1.3363 9 14 3.0963 0.1101 2.5707 10 1 2.8744 -1.3260 2.2646 11 1 3.7941 0.2361 3.8755 12 1 1.7881 0.8095 2.6395 13 7 1.6524 2.0974 -1.2519 14 6 0.3968 2.6822 -1.3707 15 7 -0.4430 2.6426 -0.3486 16 6 -1.6447 3.1828 -0.4111 17 6 -2.0801 3.8172 -1.5565 18 6 -1.2275 3.8852 -2.6651 19 6 -1.6554 4.5572 -3.9130 20 8 -0.9032 4.6063 -4.8649 21 8 -2.8790 5.1140 -3.9925 22 6 0.0367 3.3024 -2.5623 23 7 0.9794 3.3448 -3.7028 24 8 1.7582 4.2744 -3.8150 25 8 0.9761 2.4499 -4.5291 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 5.8770 0.4825 2.1133 32 1 2.2720 2.1230 -1.9978 33 1 -2.2981 3.1269 0.4471 34 1 -3.0661 4.2560 -1.5974 35 1 -3.1134 5.5418 -4.8274 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604980729.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:36 Heat of formation + Delta-G solvation = -55.544610 kcal Electronic energy + Delta-G solvation = -24386.911714 eV Core-core repulsion = 20581.517669 eV Total energy + Delta-G solvation = -3805.394045 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.45828 -41.88133 -41.10026 -38.37516 -37.63530 -37.46390 -35.05405 -34.45149 -33.74142 -31.50755 -29.24898 -28.18338 -26.39193 -24.68731 -24.01859 -23.24566 -21.83051 -20.63727 -20.05350 -19.94165 -19.19200 -18.78837 -18.59977 -17.55390 -17.31586 -17.13527 -16.69109 -16.17113 -15.82377 -15.63828 -15.09741 -14.89660 -14.36792 -14.03933 -13.93535 -13.69502 -13.01305 -12.92266 -12.89197 -12.82717 -12.49804 -12.44539 -12.34907 -12.32282 -12.07960 -11.68068 -11.55423 -11.34735 -11.27017 -10.89859 -10.81975 -9.16663 -8.42393 -6.53053 -1.08900 -0.68570 -0.21957 0.25193 1.14368 1.29528 1.34522 1.36434 1.46679 1.89539 2.24082 2.33521 2.92666 3.10448 3.23827 3.32902 3.63526 3.99108 4.18805 4.28080 4.32770 4.38501 4.63572 4.71407 4.98671 5.04155 5.05857 5.13508 5.18816 5.19771 5.34160 5.47016 5.66326 5.86819 6.25129 6.33375 6.48007 6.58149 6.69181 7.13533 8.73812 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023216 B = 0.005162 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.793170 B = 5423.174317 C = 6145.857082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.142 4.142 3 C 0.261 3.739 4 H 0.059 0.941 5 C -0.554 4.554 6 H 0.033 0.967 7 C 0.024 3.976 8 N -0.938 5.938 9 Si 0.951 3.049 10 H -0.261 1.261 11 H -0.294 1.294 12 H -0.232 1.232 13 N -0.692 5.692 14 C 0.448 3.552 15 N -0.503 5.503 16 C 0.198 3.802 17 C -0.143 4.143 18 C -0.009 4.009 19 C 0.530 3.470 20 O -0.536 6.536 21 O -0.473 6.473 22 C -0.156 4.156 23 N 0.044 4.956 24 O -0.170 6.170 25 O -0.153 6.153 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.272 0.728 32 H 0.397 0.603 33 H 0.238 0.762 34 H 0.214 0.786 35 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.285 5.386 -2.164 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.180 4.180 3 C 0.158 3.842 4 H 0.077 0.923 5 C -0.591 4.591 6 H 0.051 0.949 7 C -0.175 4.175 8 N -0.576 5.576 9 Si 0.775 3.225 10 H -0.187 1.187 11 H -0.221 1.221 12 H -0.155 1.155 13 N -0.314 5.314 14 C 0.210 3.790 15 N -0.222 5.222 16 C 0.034 3.966 17 C -0.165 4.165 18 C -0.019 4.019 19 C 0.373 3.627 20 O -0.427 6.427 21 O -0.287 6.287 22 C -0.247 4.247 23 N 0.570 4.430 24 O -0.388 6.388 25 O -0.376 6.376 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.232 0.768 33 H 0.254 0.746 34 H 0.230 0.770 35 H 0.308 0.692 Dipole moment (debyes) X Y Z Total from point charges -23.882 4.643 -0.452 24.334 hybrid contribution 1.127 0.320 -1.839 2.180 sum -22.756 4.962 -2.291 23.403 Atomic orbital electron populations 1.21788 0.93777 1.01060 1.02162 1.22249 0.97303 0.97759 1.00731 1.19040 0.92926 0.90066 0.82175 0.92308 1.21280 0.90851 1.39862 1.07156 0.94878 1.25781 0.96086 0.95390 1.00287 1.70024 1.11031 1.45567 1.30963 0.85824 0.79925 0.79723 0.76983 1.18729 1.22112 1.15512 1.45404 1.11426 1.56441 1.18178 1.17904 0.87860 0.87095 0.86148 1.67854 1.05998 1.22673 1.25689 1.24037 0.89256 0.84646 0.98624 1.22755 1.02292 1.01527 0.89945 1.19029 0.90618 0.96945 0.95333 1.20531 0.80544 0.75567 0.86056 1.91038 1.55148 1.56937 1.39560 1.84417 1.30109 1.67340 1.46859 1.21269 0.94145 1.20363 0.88944 1.43355 0.99806 0.98845 1.00982 1.94524 1.35677 1.26988 1.81652 1.94487 1.75106 1.31065 1.36978 0.90941 0.93812 0.92360 0.93359 0.92797 0.91889 0.76836 0.74561 0.76966 0.69205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 8.44 71.98 0.61 -3.43 16 2 C -0.14 -5.69 5.11 30.59 0.16 -5.54 16 3 C 0.26 11.73 1.84 44.24 0.08 11.81 16 4 H 0.06 2.64 6.59 -2.39 -0.02 2.63 16 5 C -0.55 -30.96 9.31 25.60 0.24 -30.72 16 6 H 0.03 2.10 7.98 -2.91 -0.02 2.07 16 7 C 0.02 1.36 5.45 84.66 0.46 1.82 16 8 N -0.94 -57.20 13.96 21.45 0.30 -56.91 16 9 Si 0.95 41.87 24.41 68.60 1.67 43.55 16 10 H -0.26 -10.92 6.83 99.48 0.68 -10.24 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.23 -9.13 6.53 99.48 0.65 -8.48 16 13 N -0.69 -28.84 5.14 -328.18 -1.69 -30.53 16 14 C 0.45 15.37 6.03 133.06 0.80 16.18 16 15 N -0.50 -13.53 6.37 -193.40 -1.23 -14.76 16 16 C 0.20 2.86 11.16 84.62 0.94 3.80 16 17 C -0.14 -1.90 9.70 22.64 0.22 -1.68 16 18 C -0.01 -0.22 5.90 -19.91 -0.12 -0.34 16 19 C 0.53 12.30 8.30 70.43 0.58 12.88 16 20 O -0.54 -17.61 15.51 24.97 0.39 -17.22 16 21 O -0.47 -5.31 12.78 -55.77 -0.71 -6.02 16 22 C -0.16 -5.25 6.22 36.90 0.23 -5.02 16 23 N 0.04 1.76 1.73 -45.21 -0.08 1.69 16 24 O -0.17 -7.40 19.01 21.55 0.41 -6.99 16 25 O -0.15 -6.41 19.01 21.55 0.41 -6.00 16 26 H 0.07 2.06 7.67 -2.39 -0.02 2.04 16 27 H 0.04 1.34 5.59 -2.39 -0.01 1.33 16 28 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.05 2.22 3.22 -2.38 -0.01 2.21 16 31 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 32 H 0.40 17.84 7.77 -92.71 -0.72 17.11 16 33 H 0.24 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.21 0.77 7.71 -2.91 -0.02 0.75 16 35 H 0.44 1.10 9.11 -74.06 -0.67 0.43 16 Total: -1.00 -80.29 304.15 3.39 -76.90 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -0.29 Total: 16.52 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 4.21 Total: -0.23 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -2.70 Total: -100.51 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: 0.49 Total: -36.23 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.67 Total: 43.55 kcal Total: -80.29 3.39 -76.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980729.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.356 kcal (2) G-P(sol) polarization free energy of solvation -80.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds