Wall clock time and date at job start Tue Mar 31 2020 07:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47145 * 2 1 4 4 N 1.46902 * 109.47095 * 119.99781 * 2 1 3 5 5 C 1.46898 * 110.99653 * 273.00145 * 4 2 1 6 6 C 1.53000 * 109.46846 * 174.84528 * 5 4 2 7 7 C 1.50698 * 115.55161 * 279.31663 * 6 5 4 8 8 H 1.07996 * 120.00283 * 95.10644 * 7 6 5 9 9 C 1.37881 * 120.00094 * 275.10773 * 7 6 5 10 10 N 1.31516 * 120.00012 * 4.81151 * 9 7 6 11 11 Si 1.86797 * 120.00137 * 184.81936 * 9 7 6 12 12 H 1.48503 * 109.47140 * 89.99855 * 11 9 7 13 13 H 1.48498 * 109.46986 * 209.99612 * 11 9 7 14 14 H 1.48494 * 109.46973 * 329.99718 * 11 9 7 15 15 C 1.53004 * 117.50085 * 133.60979 * 6 5 4 16 16 C 1.52998 * 59.99943 * 252.51180 * 15 6 5 17 17 C 1.50699 * 109.47054 * 239.99663 * 2 1 3 18 18 C 1.32746 * 124.69741 * 105.94021 * 17 2 1 19 19 C 1.44469 * 113.08438 * 179.81498 * 18 17 2 20 20 C 1.47032 * 123.47431 * 180.25296 * 19 18 17 21 21 O 1.21564 * 119.99662 * 0.26030 * 20 19 18 22 22 O 1.34795 * 120.00382 * 180.26078 * 20 19 18 23 23 C 1.36101 * 113.05331 * 0.46571 * 19 18 17 24 24 S 1.70444 * 110.80395 * 359.75155 * 23 19 18 25 25 H 1.09007 * 109.47282 * 60.00410 * 1 2 3 26 26 H 1.09004 * 109.47145 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47512 * 299.99940 * 1 2 3 28 28 H 1.00897 * 111.00147 * 149.05207 * 4 2 1 29 29 H 1.08997 * 109.47737 * 294.84402 * 5 4 2 30 30 H 1.09007 * 109.47027 * 54.85031 * 5 4 2 31 31 H 0.96996 * 120.00078 * 185.01200 * 10 9 7 32 32 H 1.09003 * 117.49733 * 359.97438 * 15 6 5 33 33 H 1.08997 * 117.50235 * 145.01910 * 15 6 5 34 34 H 1.09004 * 117.49620 * 252.51057 * 16 15 6 35 35 H 1.08993 * 117.52356 * 107.47916 * 16 15 6 36 36 H 1.07997 * 123.45546 * 0.02562 * 18 17 2 37 37 H 0.96700 * 117.00251 * 179.97438 * 22 20 19 38 38 H 1.07994 * 124.59718 * 179.75158 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.1274 0.2336 2.3347 6 6 2.5153 -0.5454 3.5932 7 6 1.3849 -1.2561 4.2919 8 1 1.1899 -2.2973 4.0820 9 6 0.5997 -0.5769 5.1993 10 7 0.7756 0.7131 5.3852 11 14 -0.7138 -1.4891 6.1647 12 1 -0.1308 -2.0031 7.4301 13 1 -1.8324 -0.5631 6.4753 14 1 -1.2223 -2.6261 5.3562 15 6 3.6338 0.0306 4.4639 16 6 3.8908 -1.2151 3.6135 17 6 2.0323 -0.7105 -1.2304 18 6 2.5668 -0.1080 -2.2856 19 6 2.9670 -1.0309 -3.3225 20 6 3.5886 -0.6104 -4.5868 21 8 3.7944 0.5685 -4.8003 22 8 3.9302 -1.5320 -5.5093 23 6 2.7053 -2.3295 -3.0102 24 16 1.9849 -2.4484 -1.4700 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 2.9018 -1.1478 1.0193 29 1 2.8900 0.9826 2.1216 30 1 1.1683 0.7265 2.4938 31 1 0.2744 1.1766 6.0742 32 1 4.0936 0.9643 4.1399 33 1 3.5522 -0.1043 5.5424 34 1 3.9781 -2.1696 4.1327 35 1 4.5191 -1.1012 2.7303 36 1 2.6927 0.9621 -2.3598 37 1 4.3356 -1.2074 -6.3250 38 1 2.9243 -3.1705 -3.6513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609779591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:58 Heat of formation + Delta-G solvation = -38.802844 kcal Electronic energy + Delta-G solvation = -20899.812036 eV Core-core repulsion = 17641.437182 eV Total energy + Delta-G solvation = -3258.374853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.33004 -38.07525 -36.93050 -36.18468 -35.09521 -31.88469 -30.71854 -28.58747 -25.87342 -25.61021 -24.65875 -22.63529 -21.16651 -20.56584 -19.66684 -18.88791 -18.20805 -17.36161 -16.59543 -16.02126 -15.80063 -14.99786 -14.72582 -14.47258 -13.97974 -13.81029 -13.43810 -13.11238 -12.89171 -12.72641 -12.54033 -11.94161 -11.78700 -11.68050 -11.59709 -11.30983 -11.19193 -10.95954 -10.87929 -10.65085 -10.50010 -10.39972 -10.18180 -9.47715 -8.95126 -8.79408 -8.57751 -8.39582 -8.08531 -7.71326 -5.97154 -4.00664 0.54134 1.40799 1.68771 1.88638 2.88733 2.94868 3.33118 3.40413 3.43926 4.46059 4.51003 4.73193 4.94189 5.07853 5.30758 5.32727 5.43499 5.52751 5.62204 5.70975 5.91858 6.07623 6.14797 6.15927 6.24036 6.25990 6.36231 6.48192 6.58380 6.63646 6.74446 6.84573 7.12973 7.47354 7.60807 7.70574 7.80652 7.95253 8.02228 8.53661 9.00321 9.63639 11.12005 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026156 B = 0.003470 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.253474 B = 8067.264987 C = 8291.977014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.151 3.849 3 H 0.057 0.943 4 N -0.668 5.668 5 C 0.107 3.893 6 C 0.055 3.945 7 C -0.474 4.474 8 H 0.060 0.940 9 C 0.067 3.933 10 N -0.885 5.885 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.273 1.273 15 C -0.159 4.159 16 C -0.212 4.212 17 C -0.194 4.194 18 C -0.093 4.093 19 C -0.156 4.156 20 C 0.547 3.453 21 O -0.517 6.517 22 O -0.515 6.515 23 C -0.203 4.203 24 S 0.258 5.742 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.332 0.668 29 H 0.000 1.000 30 H 0.080 0.920 31 H 0.258 0.742 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.152 0.848 37 H 0.413 0.587 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 -4.533 -17.463 18.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.040 3.960 3 H 0.075 0.925 4 N -0.300 5.300 5 C -0.021 4.021 6 C 0.054 3.946 7 C -0.512 4.512 8 H 0.078 0.922 9 C -0.135 4.135 10 N -0.522 5.522 11 Si 0.715 3.285 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.198 1.198 15 C -0.197 4.197 16 C -0.249 4.249 17 C -0.312 4.312 18 C -0.121 4.121 19 C -0.173 4.173 20 C 0.390 3.610 21 O -0.407 6.407 22 O -0.327 6.327 23 C -0.341 4.341 24 S 0.526 5.474 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.150 0.850 29 H 0.018 0.982 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.170 0.830 37 H 0.271 0.729 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.038 -5.620 -16.011 17.091 hybrid contribution 1.029 1.574 -1.177 2.218 sum 3.067 -4.047 -17.187 17.922 Atomic orbital electron populations 1.21813 0.93280 1.02702 1.01533 1.20082 0.96299 0.94778 0.84880 0.92484 1.60634 1.34147 1.32055 1.03138 1.21688 0.99926 0.91571 0.88964 1.18779 0.87143 0.96235 0.92423 1.20397 1.12028 0.96251 1.22536 0.92189 1.24950 0.96792 0.94572 0.97169 1.70013 1.42406 1.07510 1.32298 0.86680 0.81684 0.79757 0.80429 1.20912 1.21452 1.19805 1.22554 1.05358 0.93937 0.97891 1.22914 1.03644 0.97016 1.01373 1.24760 1.07359 0.97815 1.01226 1.20907 0.99526 1.00539 0.91114 1.19192 1.10358 0.93007 0.94777 1.20220 0.74691 0.83007 0.83069 1.90906 1.52153 1.18848 1.78759 1.84573 1.74848 1.42480 1.30810 1.26089 1.03656 1.00670 1.03714 1.83572 1.53637 1.03523 1.06635 0.93111 0.91882 0.91191 0.85026 0.98212 0.90142 0.93262 0.92219 0.90070 0.90481 0.92266 0.83048 0.72909 0.80672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.41 37.16 0.35 -1.65 16 2 C 0.15 2.29 3.03 -68.87 -0.21 2.08 16 3 H 0.06 0.87 7.78 -51.93 -0.40 0.47 16 4 N -0.67 -11.95 6.15 -107.95 -0.66 -12.62 16 5 C 0.11 2.27 5.36 -3.83 -0.02 2.25 16 6 C 0.05 1.30 1.55 -155.66 -0.24 1.06 16 7 C -0.47 -12.57 8.82 -34.44 -0.30 -12.87 16 8 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 9 C 0.07 1.80 5.40 -17.82 -0.10 1.70 16 10 N -0.88 -24.56 12.89 55.43 0.71 -23.85 16 11 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 C -0.16 -3.68 9.36 -26.73 -0.25 -3.93 16 16 C -0.21 -4.48 9.59 -26.73 -0.26 -4.74 16 17 C -0.19 -2.56 4.99 -36.19 -0.18 -2.74 16 18 C -0.09 -1.20 9.92 -39.01 -0.39 -1.59 16 19 C -0.16 -1.90 5.98 -104.65 -0.63 -2.52 16 20 C 0.55 6.56 8.30 34.30 0.28 6.84 16 21 O -0.52 -7.65 17.58 -19.32 -0.34 -7.99 16 22 O -0.52 -4.35 13.08 -40.75 -0.53 -4.88 16 23 C -0.20 -2.10 10.56 29.96 0.32 -1.79 16 24 S 0.26 2.93 22.76 -107.50 -2.45 0.49 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.07 1.15 7.52 -51.93 -0.39 0.76 16 28 H 0.33 5.67 7.81 -39.29 -0.31 5.36 16 29 H 0.00 0.00 7.94 -51.93 -0.41 -0.42 16 30 H 0.08 1.91 7.45 -51.92 -0.39 1.52 16 31 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 32 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 33 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 34 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 35 H 0.06 1.12 8.01 -51.93 -0.42 0.71 16 36 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.41 1.58 9.11 45.56 0.42 1.99 16 38 H 0.18 1.41 8.02 -52.49 -0.42 0.99 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -30.11 344.08 -9.13 -39.23 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.40 Total: 6.43 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -1.62 Total: -17.91 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.05 Total: -36.46 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.87 Total: -12.87 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -2.45 Total: 0.49 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.11 -9.13 -39.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609779591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.431 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds