Wall clock time and date at job start Tue Mar 31 2020 07:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47145 * 2 1 4 4 N 1.46902 * 109.47095 * 119.99781 * 2 1 3 5 5 C 1.46898 * 110.99653 * 273.00145 * 4 2 1 6 6 C 1.53000 * 109.46846 * 174.84528 * 5 4 2 7 7 C 1.50698 * 115.55161 * 279.31663 * 6 5 4 8 8 H 1.07996 * 120.00283 * 95.10644 * 7 6 5 9 9 C 1.37881 * 120.00094 * 275.10773 * 7 6 5 10 10 N 1.31516 * 120.00012 * 4.81151 * 9 7 6 11 11 Si 1.86797 * 120.00137 * 184.81936 * 9 7 6 12 12 H 1.48503 * 109.47140 * 89.99855 * 11 9 7 13 13 H 1.48498 * 109.46986 * 209.99612 * 11 9 7 14 14 H 1.48494 * 109.46973 * 329.99718 * 11 9 7 15 15 C 1.53004 * 117.50085 * 133.60979 * 6 5 4 16 16 C 1.52998 * 59.99943 * 252.51180 * 15 6 5 17 17 C 1.50699 * 109.47054 * 239.99663 * 2 1 3 18 18 C 1.32746 * 124.69741 * 105.94021 * 17 2 1 19 19 C 1.44469 * 113.08438 * 179.81498 * 18 17 2 20 20 C 1.47032 * 123.47431 * 180.25296 * 19 18 17 21 21 O 1.21564 * 119.99662 * 0.26030 * 20 19 18 22 22 O 1.34795 * 120.00382 * 180.26078 * 20 19 18 23 23 C 1.36101 * 113.05331 * 0.46571 * 19 18 17 24 24 S 1.70444 * 110.80395 * 359.75155 * 23 19 18 25 25 H 1.09007 * 109.47282 * 60.00410 * 1 2 3 26 26 H 1.09004 * 109.47145 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47512 * 299.99940 * 1 2 3 28 28 H 1.00897 * 111.00147 * 149.05207 * 4 2 1 29 29 H 1.08997 * 109.47737 * 294.84402 * 5 4 2 30 30 H 1.09007 * 109.47027 * 54.85031 * 5 4 2 31 31 H 0.96996 * 120.00078 * 185.01200 * 10 9 7 32 32 H 1.09003 * 117.49733 * 359.97438 * 15 6 5 33 33 H 1.08997 * 117.50235 * 145.01910 * 15 6 5 34 34 H 1.09004 * 117.49620 * 252.51057 * 16 15 6 35 35 H 1.08993 * 117.52356 * 107.47916 * 16 15 6 36 36 H 1.07997 * 123.45546 * 0.02562 * 18 17 2 37 37 H 0.96700 * 117.00251 * 179.97438 * 22 20 19 38 38 H 1.07994 * 124.59718 * 179.75158 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.1274 0.2336 2.3347 6 6 2.5153 -0.5454 3.5932 7 6 1.3849 -1.2561 4.2919 8 1 1.1899 -2.2973 4.0820 9 6 0.5997 -0.5769 5.1993 10 7 0.7756 0.7131 5.3852 11 14 -0.7138 -1.4891 6.1647 12 1 -0.1308 -2.0031 7.4301 13 1 -1.8324 -0.5631 6.4753 14 1 -1.2223 -2.6261 5.3562 15 6 3.6338 0.0306 4.4639 16 6 3.8908 -1.2151 3.6135 17 6 2.0323 -0.7105 -1.2304 18 6 2.5668 -0.1080 -2.2856 19 6 2.9670 -1.0309 -3.3225 20 6 3.5886 -0.6104 -4.5868 21 8 3.7944 0.5685 -4.8003 22 8 3.9302 -1.5320 -5.5093 23 6 2.7053 -2.3295 -3.0102 24 16 1.9849 -2.4484 -1.4700 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 2.9018 -1.1478 1.0193 29 1 2.8900 0.9826 2.1216 30 1 1.1683 0.7265 2.4938 31 1 0.2744 1.1766 6.0742 32 1 4.0936 0.9643 4.1399 33 1 3.5522 -0.1043 5.5424 34 1 3.9781 -2.1696 4.1327 35 1 4.5191 -1.1012 2.7303 36 1 2.6927 0.9621 -2.3598 37 1 4.3356 -1.2074 -6.3250 38 1 2.9243 -3.1705 -3.6513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609779591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:57 Heat of formation + Delta-G solvation = -57.541041 kcal Electronic energy + Delta-G solvation = -20900.624585 eV Core-core repulsion = 17641.437182 eV Total energy + Delta-G solvation = -3259.187402 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20167 -39.35720 -38.33250 -37.03638 -36.43917 -33.90860 -32.00098 -29.70277 -27.75830 -26.54027 -26.26546 -23.78754 -22.86589 -21.75299 -20.96621 -20.35508 -19.07605 -18.55191 -17.76277 -17.45358 -16.67570 -16.63170 -16.23312 -15.99341 -15.32451 -15.19859 -14.77958 -14.54457 -13.87436 -13.78135 -13.64852 -13.53641 -13.18936 -13.02501 -12.85461 -12.71108 -12.60440 -12.56809 -12.33985 -12.27408 -12.00558 -11.98373 -11.45276 -11.30487 -10.70540 -10.37114 -9.98148 -9.85674 -9.48216 -9.19595 -8.02180 -6.10205 -0.33656 0.49484 0.71219 0.96094 1.44531 1.47033 1.55629 2.04032 2.12924 2.49568 3.18662 3.28445 3.61719 3.69247 4.01162 4.21612 4.26012 4.39579 4.46010 4.52680 4.60636 4.71618 4.74591 4.80061 4.84425 4.95420 5.02387 5.07278 5.10507 5.23196 5.31046 5.36642 5.55269 5.66529 5.79219 5.91782 6.25567 6.48385 6.66593 6.94918 6.97400 7.56302 9.06228 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026156 B = 0.003470 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.253474 B = 8067.264987 C = 8291.977014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.154 3.846 3 H 0.053 0.947 4 N -0.670 5.670 5 C 0.124 3.876 6 C 0.030 3.970 7 C -0.485 4.485 8 H 0.050 0.950 9 C 0.023 3.977 10 N -0.911 5.911 11 Si 0.942 3.058 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.269 1.269 15 C -0.169 4.169 16 C -0.184 4.184 17 C -0.212 4.212 18 C -0.091 4.091 19 C -0.179 4.179 20 C 0.554 3.446 21 O -0.554 6.554 22 O -0.503 6.503 23 C -0.177 4.177 24 S 0.277 5.723 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.338 0.662 29 H 0.003 0.997 30 H 0.048 0.952 31 H 0.256 0.744 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.146 0.854 37 H 0.433 0.567 38 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.890 -6.292 -19.157 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.043 3.957 3 H 0.071 0.929 4 N -0.302 5.302 5 C -0.005 4.005 6 C 0.030 3.970 7 C -0.523 4.523 8 H 0.068 0.932 9 C -0.176 4.176 10 N -0.550 5.550 11 Si 0.769 3.231 12 H -0.206 1.206 13 H -0.215 1.215 14 H -0.193 1.193 15 C -0.207 4.207 16 C -0.221 4.221 17 C -0.330 4.330 18 C -0.120 4.120 19 C -0.196 4.196 20 C 0.398 3.602 21 O -0.447 6.447 22 O -0.317 6.317 23 C -0.315 4.315 24 S 0.545 5.455 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.157 0.843 29 H 0.021 0.979 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.163 0.837 37 H 0.296 0.704 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.497 -7.410 -17.735 19.382 hybrid contribution 0.918 2.041 -0.734 2.355 sum 3.415 -5.368 -18.469 19.534 Atomic orbital electron populations 1.21767 0.93239 1.02536 1.01341 1.19980 0.96284 0.94691 0.84741 0.92940 1.60509 1.34535 1.31686 1.03440 1.21278 0.98144 0.91655 0.89462 1.18877 0.87391 0.97427 0.93350 1.20641 1.12894 0.95963 1.22767 0.93150 1.25574 0.98604 0.95217 0.98213 1.70113 1.43480 1.08583 1.32825 0.85796 0.79409 0.78694 0.79194 1.20634 1.21505 1.19337 1.22467 1.06059 0.95491 0.96688 1.22899 1.01866 0.95904 1.01417 1.24465 1.08792 0.99157 1.00542 1.20953 0.98975 1.00650 0.91405 1.19218 1.11756 0.93475 0.95112 1.20163 0.73985 0.82702 0.83337 1.90897 1.53891 1.20371 1.79558 1.84515 1.74415 1.41345 1.31390 1.26377 1.01182 1.00802 1.03154 1.83549 1.53359 1.01569 1.07043 0.91019 0.91972 0.93622 0.84295 0.97854 0.93295 0.93504 0.91342 0.92491 0.90490 0.89425 0.83656 0.70449 0.77825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 9.41 71.98 0.68 -3.17 16 2 C 0.15 4.59 3.03 44.17 0.13 4.73 16 3 H 0.05 1.61 7.78 -2.39 -0.02 1.59 16 4 N -0.67 -23.57 6.15 -495.44 -3.04 -26.61 16 5 C 0.12 5.30 5.36 86.30 0.46 5.76 16 6 C 0.03 1.43 1.55 -52.93 -0.08 1.35 16 7 C -0.48 -25.86 8.82 25.60 0.23 -25.63 16 8 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 9 C 0.02 1.25 5.40 84.66 0.46 1.70 16 10 N -0.91 -51.56 12.89 21.45 0.28 -51.29 16 11 Si 0.94 43.29 29.54 68.60 2.03 45.32 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 13 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 15 C -0.17 -7.81 9.36 30.59 0.29 -7.52 16 16 C -0.18 -7.49 9.59 30.59 0.29 -7.20 16 17 C -0.21 -5.32 4.99 24.51 0.12 -5.19 16 18 C -0.09 -2.26 9.92 22.68 0.22 -2.03 16 19 C -0.18 -3.96 5.98 -19.88 -0.12 -4.08 16 20 C 0.55 12.17 8.30 70.13 0.58 12.75 16 21 O -0.55 -15.89 17.58 19.63 0.35 -15.54 16 22 O -0.50 -6.95 13.08 -57.07 -0.75 -7.69 16 23 C -0.18 -3.09 10.56 67.32 0.71 -2.37 16 24 S 0.28 5.61 22.76 -56.49 -1.29 4.32 16 25 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.04 1.54 7.52 -2.39 -0.02 1.53 16 28 H 0.34 11.05 7.81 -89.70 -0.70 10.35 16 29 H 0.00 0.14 7.94 -2.39 -0.02 0.12 16 30 H 0.05 2.39 7.45 -2.38 -0.02 2.37 16 31 H 0.26 13.99 8.32 -92.71 -0.77 13.22 16 32 H 0.07 2.99 8.08 -2.39 -0.02 2.97 16 33 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.08 3.14 8.14 -2.38 -0.02 3.12 16 35 H 0.09 3.08 8.01 -2.39 -0.02 3.06 16 36 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 37 H 0.43 2.03 9.11 -74.06 -0.67 1.35 16 38 H 0.20 2.34 8.02 -2.91 -0.02 2.32 16 Total: -1.00 -64.70 344.08 1.26 -63.44 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -0.28 Total: 18.96 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 3.98 Total: -30.91 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -2.77 Total: -77.90 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.40 Total: -23.24 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -1.29 Total: 4.32 kcal Total: -64.70 1.26 -63.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609779591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.895 kcal (2) G-P(sol) polarization free energy of solvation -64.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds