Wall clock time and date at job start Tue Mar 31 2020 07:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47082 * 2 1 4 4 N 1.46904 * 109.47318 * 239.99263 * 2 1 3 5 5 C 1.46895 * 110.99450 * 85.67865 * 4 2 1 6 6 C 1.53009 * 109.46855 * 180.19747 * 5 4 2 7 7 C 1.50696 * 115.55925 * 320.19480 * 6 5 4 8 8 H 1.07994 * 120.00669 * 98.39666 * 7 6 5 9 9 C 1.37883 * 119.99554 * 278.39426 * 7 6 5 10 10 N 1.31515 * 120.00368 * 4.90706 * 9 7 6 11 11 Si 1.86807 * 119.99720 * 184.90030 * 9 7 6 12 12 H 1.48495 * 109.47287 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.46675 * 120.00339 * 11 9 7 14 14 H 1.48503 * 109.47237 * 240.00061 * 11 9 7 15 15 C 1.52991 * 117.49948 * 174.50281 * 6 5 4 16 16 C 1.53000 * 60.03187 * 252.50080 * 15 6 5 17 17 C 1.50709 * 109.46618 * 119.99360 * 2 1 3 18 18 C 1.32734 * 124.69757 * 253.65470 * 17 2 1 19 19 C 1.44471 * 113.08747 * 179.97438 * 18 17 2 20 20 C 1.47030 * 123.47505 * 180.02562 * 19 18 17 21 21 O 1.21562 * 120.00279 * 0.02562 * 20 19 18 22 22 O 1.34801 * 120.00088 * 180.02562 * 20 19 18 23 23 C 1.36104 * 113.04935 * 0.02562 * 19 18 17 24 24 S 1.70449 * 110.80657 * 359.74387 * 23 19 18 25 25 H 1.09000 * 109.47043 * 60.01013 * 1 2 3 26 26 H 1.08999 * 109.46932 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47150 * 300.00165 * 1 2 3 28 28 H 1.00899 * 110.99959 * 321.72600 * 4 2 1 29 29 H 1.08996 * 109.47807 * 60.19688 * 5 4 2 30 30 H 1.09000 * 109.47045 * 300.19347 * 5 4 2 31 31 H 0.96994 * 119.99818 * 174.97213 * 10 9 7 32 32 H 1.09009 * 117.50065 * 359.97438 * 15 6 5 33 33 H 1.09003 * 117.50228 * 144.99796 * 15 6 5 34 34 H 1.08999 * 117.50021 * 107.50364 * 16 15 6 35 35 H 1.09003 * 117.49368 * 252.52038 * 16 15 6 36 36 H 1.08001 * 123.45789 * 359.97438 * 18 17 2 37 37 H 0.96696 * 117.00712 * 180.02562 * 22 20 19 38 38 H 1.08001 * 124.59723 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6927 -1.1994 5 6 2.0978 0.2262 -2.3428 6 6 2.6059 -0.5308 -3.5716 7 6 3.7048 -1.5288 -3.3120 8 1 3.4684 -2.5773 -3.2073 9 6 5.0122 -1.1031 -3.2081 10 7 5.2898 0.1820 -3.2390 11 14 6.3891 -2.3519 -3.0233 12 1 5.8170 -3.7222 -3.0168 13 1 7.3357 -2.2166 -4.1594 14 1 7.1093 -2.1096 -1.7474 15 6 2.6357 0.2224 -4.9029 16 6 1.5890 -0.8679 -4.6649 17 6 2.0323 -0.7103 1.2306 18 6 2.5737 -0.1083 2.2825 19 6 2.9676 -1.0306 3.3225 20 6 3.5894 -0.6098 4.5866 21 8 3.7963 0.5690 4.7995 22 8 3.9301 -1.5313 5.5097 23 6 2.7037 -2.3290 3.0113 24 16 1.9763 -2.4475 1.4743 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.4431 -1.4917 -1.4162 29 1 2.7834 1.0405 -2.1086 30 1 1.1080 0.6329 -2.5502 31 1 6.1994 0.4853 -3.0930 32 1 2.2928 1.2572 -4.9036 33 1 3.4503 -0.0036 -5.5910 34 1 0.5580 -0.5504 -4.5088 35 1 1.7153 -1.8113 -5.1960 36 1 2.7061 0.9612 2.3536 37 1 4.3357 -1.2067 6.3252 38 1 2.9219 -3.1699 3.6529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609779608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:00 Heat of formation + Delta-G solvation = -35.709363 kcal Electronic energy + Delta-G solvation = -21173.858679 eV Core-core repulsion = 17915.617969 eV Total energy + Delta-G solvation = -3258.240710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.14969 -37.91206 -36.83585 -36.02110 -35.15872 -31.78736 -30.66334 -28.48763 -25.54961 -25.41499 -24.60131 -22.70885 -21.14482 -20.72265 -19.50539 -18.93600 -18.03700 -17.04979 -16.38240 -16.01986 -15.62446 -14.83156 -14.47089 -14.36947 -14.02393 -13.59853 -13.51212 -12.90129 -12.79145 -12.64096 -12.51373 -12.15514 -11.73917 -11.66582 -11.54919 -11.36471 -11.14894 -10.88433 -10.83764 -10.68067 -10.41731 -10.33677 -10.12892 -9.44518 -8.84145 -8.68567 -8.34035 -8.31606 -8.02129 -7.53856 -5.88646 -3.90357 0.76235 1.63094 1.93687 2.10582 3.05724 3.16905 3.37236 3.45771 3.48085 4.52261 4.67299 4.95302 5.11682 5.28111 5.32262 5.36491 5.42391 5.45959 5.54516 5.82931 5.88464 5.99441 6.12526 6.16360 6.27859 6.33749 6.39077 6.45662 6.50953 6.58485 6.72938 6.94889 7.11184 7.43523 7.47094 7.87693 7.95674 8.02436 8.16045 8.56617 9.05634 9.72860 11.21333 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.004860 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.110574 B = 5759.666880 C = 6680.173887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.146 3.854 3 H 0.093 0.907 4 N -0.649 5.649 5 C 0.111 3.889 6 C 0.049 3.951 7 C -0.466 4.466 8 H 0.057 0.943 9 C 0.076 3.924 10 N -0.883 5.883 11 Si 0.884 3.116 12 H -0.274 1.274 13 H -0.288 1.288 14 H -0.286 1.286 15 C -0.160 4.160 16 C -0.218 4.218 17 C -0.158 4.158 18 C -0.100 4.100 19 C -0.153 4.153 20 C 0.548 3.452 21 O -0.517 6.517 22 O -0.516 6.516 23 C -0.202 4.202 24 S 0.237 5.763 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.334 0.666 29 H 0.073 0.927 30 H -0.003 1.003 31 H 0.256 0.744 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.151 0.849 37 H 0.411 0.589 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.532 -3.400 12.280 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.034 3.966 3 H 0.111 0.889 4 N -0.278 5.278 5 C -0.018 4.018 6 C 0.048 3.952 7 C -0.504 4.504 8 H 0.075 0.925 9 C -0.126 4.126 10 N -0.521 5.521 11 Si 0.712 3.288 12 H -0.198 1.198 13 H -0.215 1.215 14 H -0.212 1.212 15 C -0.198 4.198 16 C -0.256 4.256 17 C -0.275 4.275 18 C -0.127 4.127 19 C -0.170 4.170 20 C 0.391 3.609 21 O -0.407 6.407 22 O -0.328 6.328 23 C -0.341 4.341 24 S 0.505 5.495 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.152 0.848 29 H 0.091 0.909 30 H 0.015 0.985 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.168 0.832 37 H 0.269 0.731 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.348 -4.242 11.174 14.579 hybrid contribution 0.921 0.963 1.447 1.967 sum -7.427 -3.279 12.621 15.007 Atomic orbital electron populations 1.22569 0.96744 1.02193 1.02295 1.20043 0.91744 0.97284 0.87567 0.88876 1.60364 1.55020 1.09422 1.03023 1.21498 0.95484 0.94540 0.90243 1.18899 0.94304 0.96827 0.85174 1.20165 0.89413 0.92159 1.48617 0.92492 1.24832 0.98232 0.94774 0.94748 1.69958 1.19501 1.13132 1.49501 0.86679 0.82668 0.82073 0.77371 1.19846 1.21464 1.21238 1.22518 0.99637 0.93635 1.04020 1.23084 0.93576 0.99856 1.09046 1.24504 1.06405 0.96789 0.99850 1.20805 1.00050 1.00479 0.91378 1.19172 1.10178 0.93046 0.94650 1.20244 0.74649 0.82987 0.83043 1.90895 1.52201 1.18879 1.78769 1.84579 1.74878 1.42549 1.30765 1.25902 1.04569 1.00546 1.03053 1.83157 1.54035 1.04791 1.07555 0.91896 0.92415 0.92224 0.84793 0.90863 0.98540 0.93434 0.92143 0.90141 0.92106 0.90582 0.83176 0.73078 0.80907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.15 37.16 0.34 -1.88 16 2 C 0.15 2.25 3.01 -68.86 -0.21 2.04 16 3 H 0.09 1.50 7.74 -51.93 -0.40 1.10 16 4 N -0.65 -12.10 5.43 -107.94 -0.59 -12.69 16 5 C 0.11 2.31 5.56 -3.82 -0.02 2.29 16 6 C 0.05 1.13 1.64 -155.63 -0.26 0.88 16 7 C -0.47 -12.17 8.14 -34.44 -0.28 -12.45 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.08 2.07 5.42 -17.82 -0.10 1.97 16 10 N -0.88 -24.95 13.04 55.43 0.72 -24.23 16 11 Si 0.88 21.45 29.54 -169.99 -5.02 16.42 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 C -0.16 -3.65 9.62 -26.74 -0.26 -3.91 16 16 C -0.22 -4.54 9.89 -26.69 -0.26 -4.81 16 17 C -0.16 -2.37 5.34 -36.18 -0.19 -2.56 16 18 C -0.10 -1.52 9.92 -39.01 -0.39 -1.91 16 19 C -0.15 -2.21 5.98 -104.65 -0.63 -2.84 16 20 C 0.55 7.68 8.30 34.29 0.28 7.97 16 21 O -0.52 -8.65 17.58 -19.31 -0.34 -8.99 16 22 O -0.52 -5.30 13.08 -40.77 -0.53 -5.84 16 23 C -0.20 -2.55 10.56 29.97 0.32 -2.23 16 24 S 0.24 3.10 22.85 -107.50 -2.46 0.65 16 25 H 0.06 0.79 7.49 -51.93 -0.39 0.40 16 26 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.33 5.91 8.46 -39.29 -0.33 5.58 16 29 H 0.07 1.72 8.06 -51.93 -0.42 1.30 16 30 H 0.00 -0.06 7.28 -51.93 -0.38 -0.44 16 31 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 32 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 33 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 34 H 0.06 1.13 8.09 -51.93 -0.42 0.71 16 35 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 37 H 0.41 2.27 9.11 45.56 0.42 2.68 16 38 H 0.17 1.76 8.02 -52.49 -0.42 1.34 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -30.82 344.49 -9.10 -39.92 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.43 Total: 6.99 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -1.65 Total: -17.43 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.14 Total: -36.92 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.87 Total: -14.82 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.46 Total: 0.65 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.82 -9.10 -39.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609779608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.209 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds