Wall clock time and date at job start Tue Mar 31 2020 07:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47082 * 2 1 4 4 N 1.46904 * 109.47318 * 239.99263 * 2 1 3 5 5 C 1.46895 * 110.99450 * 85.67865 * 4 2 1 6 6 C 1.53009 * 109.46855 * 180.19747 * 5 4 2 7 7 C 1.50696 * 115.55925 * 320.19480 * 6 5 4 8 8 H 1.07994 * 120.00669 * 98.39666 * 7 6 5 9 9 C 1.37883 * 119.99554 * 278.39426 * 7 6 5 10 10 N 1.31515 * 120.00368 * 4.90706 * 9 7 6 11 11 Si 1.86807 * 119.99720 * 184.90030 * 9 7 6 12 12 H 1.48495 * 109.47287 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.46675 * 120.00339 * 11 9 7 14 14 H 1.48503 * 109.47237 * 240.00061 * 11 9 7 15 15 C 1.52991 * 117.49948 * 174.50281 * 6 5 4 16 16 C 1.53000 * 60.03187 * 252.50080 * 15 6 5 17 17 C 1.50709 * 109.46618 * 119.99360 * 2 1 3 18 18 C 1.32734 * 124.69757 * 253.65470 * 17 2 1 19 19 C 1.44471 * 113.08747 * 179.97438 * 18 17 2 20 20 C 1.47030 * 123.47505 * 180.02562 * 19 18 17 21 21 O 1.21562 * 120.00279 * 0.02562 * 20 19 18 22 22 O 1.34801 * 120.00088 * 180.02562 * 20 19 18 23 23 C 1.36104 * 113.04935 * 0.02562 * 19 18 17 24 24 S 1.70449 * 110.80657 * 359.74387 * 23 19 18 25 25 H 1.09000 * 109.47043 * 60.01013 * 1 2 3 26 26 H 1.08999 * 109.46932 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47150 * 300.00165 * 1 2 3 28 28 H 1.00899 * 110.99959 * 321.72600 * 4 2 1 29 29 H 1.08996 * 109.47807 * 60.19688 * 5 4 2 30 30 H 1.09000 * 109.47045 * 300.19347 * 5 4 2 31 31 H 0.96994 * 119.99818 * 174.97213 * 10 9 7 32 32 H 1.09009 * 117.50065 * 359.97438 * 15 6 5 33 33 H 1.09003 * 117.50228 * 144.99796 * 15 6 5 34 34 H 1.08999 * 117.50021 * 107.50364 * 16 15 6 35 35 H 1.09003 * 117.49368 * 252.52038 * 16 15 6 36 36 H 1.08001 * 123.45789 * 359.97438 * 18 17 2 37 37 H 0.96696 * 117.00712 * 180.02562 * 22 20 19 38 38 H 1.08001 * 124.59723 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6927 -1.1994 5 6 2.0978 0.2262 -2.3428 6 6 2.6059 -0.5308 -3.5716 7 6 3.7048 -1.5288 -3.3120 8 1 3.4684 -2.5773 -3.2073 9 6 5.0122 -1.1031 -3.2081 10 7 5.2898 0.1820 -3.2390 11 14 6.3891 -2.3519 -3.0233 12 1 5.8170 -3.7222 -3.0168 13 1 7.3357 -2.2166 -4.1594 14 1 7.1093 -2.1096 -1.7474 15 6 2.6357 0.2224 -4.9029 16 6 1.5890 -0.8679 -4.6649 17 6 2.0323 -0.7103 1.2306 18 6 2.5737 -0.1083 2.2825 19 6 2.9676 -1.0306 3.3225 20 6 3.5894 -0.6098 4.5866 21 8 3.7963 0.5690 4.7995 22 8 3.9301 -1.5313 5.5097 23 6 2.7037 -2.3290 3.0113 24 16 1.9763 -2.4475 1.4743 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.4431 -1.4917 -1.4162 29 1 2.7834 1.0405 -2.1086 30 1 1.1080 0.6329 -2.5502 31 1 6.1994 0.4853 -3.0930 32 1 2.2928 1.2572 -4.9036 33 1 3.4503 -0.0036 -5.5910 34 1 0.5580 -0.5504 -4.5088 35 1 1.7153 -1.8113 -5.1960 36 1 2.7061 0.9612 2.3536 37 1 4.3357 -1.2067 6.3252 38 1 2.9219 -3.1699 3.6529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609779608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:59 Heat of formation + Delta-G solvation = -54.879892 kcal Electronic energy + Delta-G solvation = -21174.689976 eV Core-core repulsion = 17915.617969 eV Total energy + Delta-G solvation = -3259.072006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.18920 -39.25645 -38.27002 -37.04004 -36.52278 -33.82675 -31.97096 -29.60530 -27.46778 -26.48491 -26.12656 -23.93712 -22.85178 -21.92722 -20.98535 -20.36017 -19.06996 -18.27325 -17.77242 -17.40752 -16.67211 -16.61085 -16.14778 -15.69222 -15.38248 -15.10391 -14.66269 -14.35408 -14.11901 -13.73610 -13.65355 -13.48522 -13.36552 -13.06985 -12.85399 -12.69136 -12.57782 -12.55833 -12.37502 -12.27523 -11.97935 -11.92519 -11.44201 -11.25344 -10.72876 -10.31010 -9.85183 -9.80297 -9.39301 -8.96299 -7.94965 -5.99434 -0.28473 0.57612 0.80301 1.01318 1.42724 1.46931 1.54805 2.05860 2.15990 2.52519 3.32860 3.40439 3.60905 3.81493 4.05414 4.20532 4.26168 4.37186 4.45312 4.54433 4.57072 4.76113 4.78917 4.80201 4.85021 4.98142 5.05545 5.11473 5.18890 5.24411 5.33134 5.36854 5.54509 5.67557 5.72362 5.94278 6.38631 6.59004 6.80137 6.97414 7.02944 7.65370 9.14105 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.004860 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.110574 B = 5759.666880 C = 6680.173887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.148 3.852 3 H 0.077 0.923 4 N -0.664 5.664 5 C 0.127 3.873 6 C 0.022 3.978 7 C -0.462 4.462 8 H 0.052 0.948 9 C 0.030 3.970 10 N -0.913 5.913 11 Si 0.932 3.068 12 H -0.264 1.264 13 H -0.290 1.290 14 H -0.292 1.292 15 C -0.172 4.172 16 C -0.187 4.187 17 C -0.178 4.178 18 C -0.111 4.111 19 C -0.179 4.179 20 C 0.553 3.447 21 O -0.555 6.555 22 O -0.502 6.502 23 C -0.185 4.185 24 S 0.266 5.734 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.340 0.660 29 H 0.037 0.963 30 H 0.019 0.981 31 H 0.251 0.749 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.140 0.860 37 H 0.433 0.567 38 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.900 -5.252 13.099 17.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.036 3.964 3 H 0.095 0.905 4 N -0.295 5.295 5 C -0.002 4.002 6 C 0.021 3.979 7 C -0.500 4.500 8 H 0.070 0.930 9 C -0.169 4.169 10 N -0.553 5.553 11 Si 0.760 3.240 12 H -0.188 1.188 13 H -0.217 1.217 14 H -0.219 1.219 15 C -0.210 4.210 16 C -0.224 4.224 17 C -0.296 4.296 18 C -0.139 4.139 19 C -0.196 4.196 20 C 0.398 3.602 21 O -0.448 6.448 22 O -0.316 6.316 23 C -0.324 4.324 24 S 0.534 5.466 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.159 0.841 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.158 0.842 37 H 0.295 0.705 38 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -9.725 -6.129 12.015 16.628 hybrid contribution 1.330 1.461 1.224 2.324 sum -8.395 -4.668 13.238 16.356 Atomic orbital electron populations 1.22451 0.94100 1.03186 1.02995 1.20004 0.93787 0.96185 0.86419 0.90520 1.60203 1.56386 1.09690 1.03173 1.21151 0.95486 0.93589 0.89990 1.19046 0.95201 0.97236 0.86415 1.20415 0.90227 0.92469 1.46899 0.93029 1.25415 1.00203 0.95910 0.95335 1.70072 1.19355 1.14482 1.51370 0.85905 0.80497 0.80901 0.76678 1.18758 1.21699 1.21921 1.22435 1.00198 0.94893 1.03496 1.23072 0.94307 0.98856 1.06199 1.24509 1.07109 0.98391 0.99597 1.20879 1.00371 1.00497 0.92187 1.19245 1.11637 0.93610 0.95091 1.20190 0.73976 0.82718 0.83330 1.90881 1.53932 1.20393 1.79577 1.84518 1.74438 1.41330 1.31339 1.26230 1.02566 1.00637 1.02933 1.83020 1.53479 1.02659 1.07452 0.91783 0.91217 0.90905 0.84085 0.94434 0.96310 0.94024 0.91196 0.92727 0.89052 0.90514 0.84188 0.70542 0.78091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 9.15 71.98 0.66 -3.20 16 2 C 0.15 4.47 3.01 44.17 0.13 4.60 16 3 H 0.08 2.53 7.74 -2.39 -0.02 2.51 16 4 N -0.66 -24.23 5.43 -495.42 -2.69 -26.91 16 5 C 0.13 5.23 5.56 86.31 0.48 5.71 16 6 C 0.02 0.99 1.64 -52.91 -0.09 0.91 16 7 C -0.46 -23.97 8.14 25.60 0.21 -23.76 16 8 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 9 C 0.03 1.64 5.42 84.66 0.46 2.10 16 10 N -0.91 -52.68 13.04 21.45 0.28 -52.40 16 11 Si 0.93 44.15 29.54 68.60 2.03 46.18 16 12 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 14 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 15 C -0.17 -7.78 9.62 30.59 0.29 -7.49 16 16 C -0.19 -7.37 9.89 30.62 0.30 -7.06 16 17 C -0.18 -5.23 5.34 24.51 0.13 -5.09 16 18 C -0.11 -3.41 9.92 22.68 0.22 -3.18 16 19 C -0.18 -4.97 5.98 -19.88 -0.12 -5.09 16 20 C 0.55 14.97 8.30 70.13 0.58 15.55 16 21 O -0.55 -18.59 17.58 19.64 0.35 -18.24 16 22 O -0.50 -9.16 13.08 -57.13 -0.75 -9.91 16 23 C -0.19 -4.22 10.56 67.32 0.71 -3.51 16 24 S 0.27 6.40 22.85 -56.49 -1.29 5.11 16 25 H 0.06 1.46 7.49 -2.39 -0.02 1.44 16 26 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.34 11.45 8.46 -89.69 -0.76 10.69 16 29 H 0.04 1.80 8.06 -2.39 -0.02 1.78 16 30 H 0.02 0.69 7.28 -2.39 -0.02 0.67 16 31 H 0.25 14.17 8.32 -92.71 -0.77 13.40 16 32 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 33 H 0.05 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.09 3.05 8.09 -2.39 -0.02 3.03 16 35 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.43 3.74 9.11 -74.06 -0.67 3.06 16 38 H 0.20 3.33 8.02 -2.91 -0.02 3.31 16 Total: -1.00 -66.38 344.49 1.56 -64.82 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -0.34 Total: 20.87 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 3.98 Total: -29.51 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -2.41 Total: -79.31 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.40 Total: -28.15 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 6.40 SS G_CDS: -1.29 Total: 5.11 kcal Total: -66.38 1.56 -64.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609779608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.939 kcal (2) G-P(sol) polarization free energy of solvation -66.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds