Wall clock time and date at job start Tue Mar 31 2020 06:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47725 * 2 1 4 4 H 1.08998 * 109.47026 * 306.15066 * 3 2 1 5 5 C 1.50699 * 109.47511 * 186.14811 * 3 2 1 6 6 H 1.07994 * 120.00019 * 334.79129 * 5 3 2 7 7 C 1.37872 * 119.99816 * 154.79248 * 5 3 2 8 8 N 1.31518 * 120.00490 * 7.42914 * 7 5 3 9 9 Si 1.86808 * 120.00027 * 187.43002 * 7 5 3 10 10 H 1.48491 * 109.47433 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47025 * 300.00260 * 9 7 5 12 12 H 1.48499 * 109.46683 * 59.99812 * 9 7 5 13 13 N 1.46511 * 109.46930 * 66.14712 * 3 2 1 14 14 C 1.38978 * 119.99935 * 275.00333 * 13 3 2 15 15 N 1.32059 * 119.63411 * 353.92641 * 14 13 3 16 16 C 1.32881 * 121.52646 * 179.71338 * 15 14 13 17 17 C 1.48045 * 119.68506 * 180.30917 * 16 15 14 18 18 O 1.21435 * 120.00398 * 180.25054 * 17 16 15 19 19 O 1.34693 * 119.99779 * 0.24956 * 17 16 15 20 20 C 1.39175 * 120.63193 * 0.56266 * 16 15 14 21 21 C 1.38792 * 119.22776 * 359.72238 * 20 16 15 22 22 C 1.38287 * 118.57860 * 0.02562 * 21 20 16 23 23 N 1.48019 * 120.34951 * 179.97438 * 22 21 20 24 24 O 1.21805 * 119.99840 * 5.37492 * 23 22 21 25 25 O 1.21802 * 120.00289 * 185.36960 * 23 22 21 26 26 H 1.08992 * 109.47148 * 59.99424 * 1 2 3 27 27 H 1.08994 * 109.47649 * 179.97438 * 1 2 3 28 28 H 1.09011 * 109.46629 * 299.99978 * 1 2 3 29 29 H 1.09005 * 109.47008 * 239.99812 * 2 1 3 30 30 H 1.09006 * 109.47068 * 120.00721 * 2 1 3 31 31 H 0.96996 * 119.99707 * 355.42722 * 8 7 5 32 32 H 0.97003 * 119.99574 * 95.00427 * 13 3 2 33 33 H 0.96696 * 117.00033 * 180.02562 * 19 17 16 34 34 H 1.08003 * 120.38948 * 179.74593 * 20 16 15 35 35 H 1.07993 * 120.71103 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5897 1.9870 -0.8298 5 6 3.5394 1.4450 -0.1522 6 1 4.1153 0.5861 0.1592 7 6 4.1758 2.5441 -0.6888 8 7 3.4966 3.6436 -0.9322 9 14 6.0031 2.4714 -1.0703 10 1 6.4428 3.7719 -1.6361 11 1 6.7586 2.1930 0.1775 12 1 6.2602 1.3909 -2.0561 13 7 1.6763 2.0890 1.2633 14 6 0.4236 2.6727 1.4097 15 7 -0.3875 2.7474 0.3701 16 6 -1.5953 3.2926 0.4689 17 6 -2.4739 3.3488 -0.7213 18 8 -3.5770 3.8498 -0.6387 19 8 -2.0496 2.8443 -1.8959 20 6 -2.0402 3.8159 1.6794 21 6 -1.2090 3.7577 2.7893 22 6 0.0392 3.1787 2.6513 23 7 0.9576 3.0964 3.8092 24 8 0.5804 3.4500 4.9121 25 8 2.0906 2.6751 3.6593 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 2.5363 3.6604 -0.7967 32 1 2.3098 2.1097 1.9976 33 1 -2.6583 2.9043 -2.6449 34 1 -3.0211 4.2618 1.7542 35 1 -1.5298 4.1568 3.7401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609912111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:39 Heat of formation + Delta-G solvation = -50.801262 kcal Electronic energy + Delta-G solvation = -24502.897396 eV Core-core repulsion = 20697.709038 eV Total energy + Delta-G solvation = -3805.188358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.00851 -40.75648 -39.57276 -36.95093 -36.26312 -36.05406 -33.15740 -33.01335 -32.07149 -29.89921 -27.34313 -26.70671 -24.07469 -23.50191 -22.75951 -21.84900 -20.29924 -19.04570 -18.86285 -18.23168 -17.82829 -17.35495 -17.28281 -16.30641 -15.94234 -15.69785 -14.82462 -14.17891 -14.02347 -13.90653 -13.78128 -13.22798 -13.16442 -13.00264 -12.62040 -11.69787 -11.36173 -11.28608 -11.12652 -11.09250 -10.93439 -10.91854 -10.84389 -10.81762 -10.51443 -10.26082 -10.23761 -9.88705 -9.55327 -8.89412 -8.75893 -7.50161 -6.72798 -4.54300 -0.22071 1.10437 1.38954 1.68497 2.30729 2.65444 3.27159 3.31951 3.50702 3.53256 3.64811 4.21575 4.29919 4.51974 4.76475 4.84097 5.06110 5.29654 5.54604 5.67072 5.75066 5.79395 5.93654 6.03588 6.21193 6.44111 6.57433 6.61504 6.66960 6.75074 7.02387 7.26600 7.54466 7.74345 7.85846 7.94760 8.09741 8.45993 8.55159 9.25297 10.65013 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012660 B = 0.006732 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.118812 B = 4158.037903 C = 5376.503118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.228 3.772 4 H 0.069 0.931 5 C -0.606 4.606 6 H 0.062 0.938 7 C 0.034 3.966 8 N -0.880 5.880 9 Si 1.071 2.929 10 H -0.281 1.281 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.633 5.633 14 C 0.451 3.549 15 N -0.469 5.469 16 C 0.199 3.801 17 C 0.547 3.453 18 O -0.501 6.501 19 O -0.482 6.482 20 C -0.212 4.212 21 C 0.036 3.964 22 C -0.178 4.178 23 N 0.060 4.940 24 O -0.177 6.177 25 O -0.189 6.189 26 H 0.062 0.938 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.276 0.724 32 H 0.418 0.582 33 H 0.414 0.586 34 H 0.159 0.841 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.468 -1.441 1.593 10.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C 0.129 3.871 4 H 0.087 0.913 5 C -0.644 4.644 6 H 0.080 0.920 7 C -0.177 4.177 8 N -0.512 5.512 9 Si 0.897 3.103 10 H -0.206 1.206 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.265 5.265 14 C 0.203 3.797 15 N -0.191 5.191 16 C 0.051 3.949 17 C 0.388 3.612 18 O -0.388 6.388 19 O -0.292 6.292 20 C -0.238 4.238 21 C 0.010 3.990 22 C -0.275 4.275 23 N 0.566 4.434 24 O -0.389 6.389 25 O -0.390 6.390 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.268 0.732 33 H 0.272 0.728 34 H 0.177 0.823 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.009 -0.925 -0.066 9.057 hybrid contribution -1.572 -0.477 1.482 2.213 sum -10.581 -1.403 1.416 10.767 Atomic orbital electron populations 1.21867 0.97369 0.99298 1.01550 1.21810 0.93976 0.98539 1.01254 1.19417 0.95879 0.89145 0.82650 0.91326 1.22122 0.90909 1.05565 1.45811 0.91982 1.26126 1.07347 0.91625 0.92554 1.70791 1.10248 1.26685 1.43503 0.83508 0.73457 0.76338 0.76953 1.20572 1.20919 1.20906 1.49023 1.08367 1.48372 1.20741 1.18565 0.88926 0.87061 0.85155 1.67852 1.03466 1.19626 1.28151 1.20102 0.90383 0.93108 0.91282 1.20389 0.83890 0.74104 0.82849 1.90907 1.20752 1.41918 1.85201 1.84761 1.50398 1.74198 1.19796 1.21452 1.03106 1.08407 0.90807 1.21077 0.88643 0.89208 1.00094 1.21659 0.95590 1.22904 0.87302 1.43221 1.00849 0.97511 1.01801 1.94465 1.80877 1.51827 1.11697 1.94272 1.04905 1.49652 1.90124 0.91859 0.94530 0.94603 0.91349 0.93382 0.91268 0.73165 0.72801 0.82294 0.81953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.55 37.16 0.32 -2.20 16 2 C -0.12 -2.32 5.58 -26.74 -0.15 -2.47 16 3 C 0.23 5.20 1.77 -69.08 -0.12 5.08 16 4 H 0.07 1.72 6.32 -51.93 -0.33 1.39 16 5 C -0.61 -15.35 8.49 -34.44 -0.29 -15.64 16 6 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 7 C 0.03 0.88 5.45 -17.82 -0.10 0.78 16 8 N -0.88 -24.66 13.63 55.43 0.76 -23.90 16 9 Si 1.07 23.27 29.91 -169.99 -5.08 18.18 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 13 N -0.63 -13.76 5.05 -55.05 -0.28 -14.04 16 14 C 0.45 8.82 5.85 -155.20 -0.91 7.91 16 15 N -0.47 -8.59 6.70 -9.01 -0.06 -8.65 16 16 C 0.20 3.07 6.74 -83.04 -0.56 2.51 16 17 C 0.55 7.58 8.32 34.75 0.29 7.87 16 18 O -0.50 -7.23 17.10 -19.21 -0.33 -7.56 16 19 O -0.48 -5.90 13.24 -40.47 -0.54 -6.43 16 20 C -0.21 -2.78 9.63 -39.03 -0.38 -3.16 16 21 C 0.04 0.50 9.66 -39.36 -0.38 0.12 16 22 C -0.18 -3.15 6.89 -79.47 -0.55 -3.69 16 23 N 0.06 1.13 4.45 34.20 0.15 1.29 16 24 O -0.18 -3.19 18.52 -29.46 -0.55 -3.74 16 25 O -0.19 -3.93 15.73 -29.46 -0.46 -4.40 16 26 H 0.06 1.12 7.85 -51.93 -0.41 0.71 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.03 0.64 5.71 -51.92 -0.30 0.35 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.28 7.79 6.83 -40.82 -0.28 7.51 16 32 H 0.42 9.43 5.02 -41.20 -0.21 9.22 16 33 H 0.41 2.69 9.11 45.56 0.42 3.11 16 34 H 0.16 1.68 7.63 -52.48 -0.40 1.28 16 35 H 0.16 1.75 7.69 -52.49 -0.40 1.35 16 LS Contribution 310.99 15.07 4.69 4.69 Total: -1.00 -29.68 310.99 -6.91 -36.59 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -2.38 Total: 10.85 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -2.83 Total: -2.88 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.57 Total: -45.31 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -1.87 Total: -22.12 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.08 Total: 18.18 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.68 -6.91 -36.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609912111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.212 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds