Wall clock time and date at job start Tue Mar 31 2020 06:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47725 * 2 1 4 4 H 1.08998 * 109.47026 * 306.15066 * 3 2 1 5 5 C 1.50699 * 109.47511 * 186.14811 * 3 2 1 6 6 H 1.07994 * 120.00019 * 334.79129 * 5 3 2 7 7 C 1.37872 * 119.99816 * 154.79248 * 5 3 2 8 8 N 1.31518 * 120.00490 * 7.42914 * 7 5 3 9 9 Si 1.86808 * 120.00027 * 187.43002 * 7 5 3 10 10 H 1.48491 * 109.47433 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47025 * 300.00260 * 9 7 5 12 12 H 1.48499 * 109.46683 * 59.99812 * 9 7 5 13 13 N 1.46511 * 109.46930 * 66.14712 * 3 2 1 14 14 C 1.38978 * 119.99935 * 275.00333 * 13 3 2 15 15 N 1.32059 * 119.63411 * 353.92641 * 14 13 3 16 16 C 1.32881 * 121.52646 * 179.71338 * 15 14 13 17 17 C 1.48045 * 119.68506 * 180.30917 * 16 15 14 18 18 O 1.21435 * 120.00398 * 180.25054 * 17 16 15 19 19 O 1.34693 * 119.99779 * 0.24956 * 17 16 15 20 20 C 1.39175 * 120.63193 * 0.56266 * 16 15 14 21 21 C 1.38792 * 119.22776 * 359.72238 * 20 16 15 22 22 C 1.38287 * 118.57860 * 0.02562 * 21 20 16 23 23 N 1.48019 * 120.34951 * 179.97438 * 22 21 20 24 24 O 1.21805 * 119.99840 * 5.37492 * 23 22 21 25 25 O 1.21802 * 120.00289 * 185.36960 * 23 22 21 26 26 H 1.08992 * 109.47148 * 59.99424 * 1 2 3 27 27 H 1.08994 * 109.47649 * 179.97438 * 1 2 3 28 28 H 1.09011 * 109.46629 * 299.99978 * 1 2 3 29 29 H 1.09005 * 109.47008 * 239.99812 * 2 1 3 30 30 H 1.09006 * 109.47068 * 120.00721 * 2 1 3 31 31 H 0.96996 * 119.99707 * 355.42722 * 8 7 5 32 32 H 0.97003 * 119.99574 * 95.00427 * 13 3 2 33 33 H 0.96696 * 117.00033 * 180.02562 * 19 17 16 34 34 H 1.08003 * 120.38948 * 179.74593 * 20 16 15 35 35 H 1.07993 * 120.71103 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5897 1.9870 -0.8298 5 6 3.5394 1.4450 -0.1522 6 1 4.1153 0.5861 0.1592 7 6 4.1758 2.5441 -0.6888 8 7 3.4966 3.6436 -0.9322 9 14 6.0031 2.4714 -1.0703 10 1 6.4428 3.7719 -1.6361 11 1 6.7586 2.1930 0.1775 12 1 6.2602 1.3909 -2.0561 13 7 1.6763 2.0890 1.2633 14 6 0.4236 2.6727 1.4097 15 7 -0.3875 2.7474 0.3701 16 6 -1.5953 3.2926 0.4689 17 6 -2.4739 3.3488 -0.7213 18 8 -3.5770 3.8498 -0.6387 19 8 -2.0496 2.8443 -1.8959 20 6 -2.0402 3.8159 1.6794 21 6 -1.2090 3.7577 2.7893 22 6 0.0392 3.1787 2.6513 23 7 0.9576 3.0964 3.8092 24 8 0.5804 3.4500 4.9121 25 8 2.0906 2.6751 3.6593 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 2.5363 3.6604 -0.7967 32 1 2.3098 2.1097 1.9976 33 1 -2.6583 2.9043 -2.6449 34 1 -3.0211 4.2618 1.7542 35 1 -1.5298 4.1568 3.7401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609912111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:39 Heat of formation + Delta-G solvation = -69.714058 kcal Electronic energy + Delta-G solvation = -24503.717517 eV Core-core repulsion = 20697.709038 eV Total energy + Delta-G solvation = -3806.008479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.44914 -41.99155 -40.79195 -38.46766 -37.62163 -37.28473 -34.80541 -34.39889 -33.65538 -31.33140 -28.71925 -28.36109 -25.55100 -25.04875 -24.19773 -23.10892 -21.91542 -20.42950 -20.20454 -19.58618 -19.14495 -18.93064 -18.74632 -17.69649 -17.12183 -17.07352 -16.31947 -15.67486 -15.63110 -15.21381 -15.08976 -14.78765 -14.50021 -14.28731 -14.19590 -12.98640 -12.81866 -12.74772 -12.66862 -12.57948 -12.46739 -12.38921 -12.31884 -12.22083 -11.97259 -11.95672 -11.58809 -11.36034 -11.00676 -10.75849 -10.65564 -9.02311 -8.75478 -6.57642 -1.54058 -0.17154 0.06119 0.28584 1.12204 1.53821 1.55627 1.61465 1.79136 2.08853 2.37470 2.50355 2.94106 3.07344 3.31391 3.55518 3.78220 3.99593 4.21916 4.24472 4.43243 4.44254 4.51984 4.82051 4.91188 5.02133 5.08087 5.10553 5.24007 5.27071 5.42044 5.68480 5.96302 6.08736 6.20924 6.45441 6.46131 6.79298 6.94551 7.29420 8.60907 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012660 B = 0.006732 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.118812 B = 4158.037903 C = 5376.503118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.114 4.114 3 C 0.239 3.761 4 H 0.041 0.959 5 C -0.618 4.618 6 H 0.057 0.943 7 C -0.012 4.012 8 N -0.913 5.913 9 Si 1.114 2.886 10 H -0.287 1.287 11 H -0.273 1.273 12 H -0.264 1.264 13 N -0.657 5.657 14 C 0.440 3.560 15 N -0.493 5.493 16 C 0.185 3.815 17 C 0.554 3.446 18 O -0.504 6.504 19 O -0.489 6.489 20 C -0.183 4.183 21 C 0.051 3.949 22 C -0.189 4.189 23 N 0.058 4.942 24 O -0.132 6.132 25 O -0.252 6.252 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.028 0.972 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.262 0.738 32 H 0.412 0.588 33 H 0.437 0.563 34 H 0.197 0.803 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.690 -1.196 2.366 12.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.152 4.152 3 C 0.138 3.862 4 H 0.059 0.941 5 C -0.656 4.656 6 H 0.076 0.924 7 C -0.215 4.215 8 N -0.547 5.547 9 Si 0.935 3.065 10 H -0.213 1.213 11 H -0.198 1.198 12 H -0.189 1.189 13 N -0.291 5.291 14 C 0.194 3.806 15 N -0.215 5.215 16 C 0.039 3.961 17 C 0.395 3.605 18 O -0.392 6.392 19 O -0.302 6.302 20 C -0.208 4.208 21 C 0.024 3.976 22 C -0.285 4.285 23 N 0.564 4.436 24 O -0.358 6.358 25 O -0.437 6.437 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.261 0.739 33 H 0.300 0.700 34 H 0.214 0.786 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.195 -0.738 0.603 11.236 hybrid contribution -1.205 -0.476 1.356 1.876 sum -12.401 -1.214 1.960 12.613 Atomic orbital electron populations 1.21706 0.95342 1.00588 1.00954 1.21745 0.95762 0.96729 1.00999 1.19094 0.94356 0.90309 0.82406 0.94107 1.22419 0.92601 1.05160 1.45465 0.92436 1.27355 1.10649 0.91329 0.92172 1.70901 1.09568 1.27802 1.46435 0.82976 0.69515 0.76465 0.77558 1.21263 1.19799 1.18880 1.48256 1.09909 1.51031 1.19900 1.18589 0.88445 0.87255 0.86345 1.67809 1.04629 1.21016 1.28083 1.20637 0.89656 0.92709 0.93094 1.20087 0.83408 0.74091 0.82929 1.90911 1.20681 1.42284 1.85360 1.84722 1.51471 1.73668 1.20306 1.21911 1.03924 1.05685 0.89272 1.21599 0.86571 0.87424 1.01979 1.21910 0.96630 1.23692 0.86244 1.43410 1.00821 0.97209 1.02191 1.94410 1.80308 1.49179 1.11867 1.94303 1.06111 1.52862 1.90437 0.92303 0.92143 0.95261 0.91389 0.93665 0.92749 0.73859 0.70031 0.78603 0.77922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 8.55 71.98 0.62 -3.84 16 2 C -0.11 -4.60 5.58 30.59 0.17 -4.43 16 3 C 0.24 11.36 1.77 44.24 0.08 11.44 16 4 H 0.04 2.15 6.32 -2.39 -0.02 2.14 16 5 C -0.62 -32.57 8.49 25.60 0.22 -32.35 16 6 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 7 C -0.01 -0.64 5.45 84.65 0.46 -0.18 16 8 N -0.91 -53.25 13.63 21.45 0.29 -52.96 16 9 Si 1.11 47.91 29.91 68.60 2.05 49.97 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 12 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 13 N -0.66 -29.75 5.05 -328.08 -1.66 -31.40 16 14 C 0.44 17.33 5.85 133.26 0.78 18.11 16 15 N -0.49 -17.95 6.70 -182.42 -1.22 -19.17 16 16 C 0.18 5.32 6.74 41.81 0.28 5.60 16 17 C 0.55 14.14 8.32 70.42 0.59 14.73 16 18 O -0.50 -13.02 17.10 20.05 0.34 -12.68 16 19 O -0.49 -11.24 13.24 -56.02 -0.74 -11.98 16 20 C -0.18 -4.08 9.63 22.63 0.22 -3.86 16 21 C 0.05 1.21 9.66 22.41 0.22 1.42 16 22 C -0.19 -6.43 6.89 36.69 0.25 -6.17 16 23 N 0.06 2.17 4.45 -45.72 -0.20 1.97 16 24 O -0.13 -4.41 18.52 18.88 0.35 -4.06 16 25 O -0.25 -10.84 15.73 18.88 0.30 -10.54 16 26 H 0.06 2.07 7.85 -2.39 -0.02 2.05 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 28 H 0.03 1.03 5.71 -2.38 -0.01 1.02 16 29 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 30 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.26 15.59 6.83 -92.71 -0.63 14.96 16 32 H 0.41 19.68 5.02 -98.74 -0.50 19.18 16 33 H 0.44 4.85 9.11 -74.06 -0.67 4.17 16 34 H 0.20 3.02 7.63 -2.91 -0.02 3.00 16 35 H 0.20 3.20 7.69 -2.91 -0.02 3.18 16 Total: -1.00 -67.03 310.99 3.53 -63.50 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.14 Total: 26.90 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 3.88 Total: 0.46 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -2.79 Total: -101.57 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: 0.25 Total: -39.26 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.05 Total: 49.97 kcal Total: -67.03 3.53 -63.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609912111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.212 kcal (2) G-P(sol) polarization free energy of solvation -67.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds