Wall clock time and date at job start Tue Mar 31 2020 06:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 H 1.09001 * 109.46947 * 55.00288 * 3 2 1 5 5 C 1.50703 * 109.47148 * 174.99635 * 3 2 1 6 6 H 1.08000 * 119.99760 * 119.99746 * 5 3 2 7 7 C 1.37878 * 119.99979 * 300.00330 * 5 3 2 8 8 N 1.31511 * 120.00155 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99674 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47649 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47349 * 119.99990 * 9 7 5 12 12 H 1.48504 * 109.47004 * 239.99452 * 9 7 5 13 13 N 1.46491 * 109.47187 * 294.99688 * 3 2 1 14 14 C 1.38984 * 120.00021 * 84.99780 * 13 3 2 15 15 N 1.32064 * 119.63117 * 5.78796 * 14 13 3 16 16 C 1.32878 * 121.52960 * 179.97438 * 15 14 13 17 17 C 1.48050 * 119.68197 * 180.02562 * 16 15 14 18 18 O 1.21441 * 119.99736 * 179.97438 * 17 16 15 19 19 O 1.34675 * 120.00211 * 0.02562 * 17 16 15 20 20 C 1.39175 * 120.63418 * 0.02562 * 16 15 14 21 21 C 1.38801 * 119.22305 * 359.69945 * 20 16 15 22 22 C 1.38291 * 118.57765 * 0.55970 * 21 20 16 23 23 N 1.48021 * 120.34682 * 179.73565 * 22 21 20 24 24 O 1.21799 * 119.99939 * 37.33921 * 23 22 21 25 25 O 1.21795 * 119.99868 * 217.06480 * 23 22 21 26 26 H 1.08995 * 109.47311 * 299.99949 * 1 2 3 27 27 H 1.09005 * 109.47114 * 60.00125 * 1 2 3 28 28 H 1.09000 * 109.47421 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47393 * 239.99666 * 2 1 3 30 30 H 1.09007 * 109.46900 * 120.00376 * 2 1 3 31 31 H 0.96998 * 120.00011 * 179.97438 * 8 7 5 32 32 H 0.96999 * 120.00704 * 265.00001 * 13 3 2 33 33 H 0.96701 * 117.00293 * 180.02562 * 19 17 16 34 34 H 1.07996 * 120.39277 * 179.97438 * 20 16 15 35 35 H 1.07990 * 120.71214 * 180.29332 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8887 -0.6522 7 6 4.1432 0.8782 1.2281 8 7 3.4061 0.3373 2.1734 9 14 6.0048 0.8811 1.3819 10 1 6.5988 1.5461 0.1944 11 1 6.3989 1.6165 2.6104 12 1 6.4969 -0.5177 1.4632 13 7 1.6526 2.0974 -1.2518 14 6 0.3973 2.6820 -1.3706 15 7 -0.3963 2.7446 -0.3168 16 6 -1.6034 3.2956 -0.3877 17 6 -2.4590 3.3443 0.8195 18 8 -3.5630 3.8470 0.7613 19 8 -2.0127 2.8323 1.9824 20 6 -2.0710 3.8272 -1.5859 21 6 -1.2584 3.7820 -2.7102 22 6 -0.0104 3.1963 -2.6013 23 7 0.8859 3.1216 -3.7770 24 8 0.9273 4.0445 -4.5707 25 8 1.5856 2.1395 -3.9479 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8291 -0.0612 2.9500 32 1 2.2720 2.1231 -1.9978 33 1 -2.6072 2.8869 2.7431 34 1 -3.0529 4.2737 -1.6392 35 1 -1.5952 4.1916 -3.6510 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609912112.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:41 Heat of formation + Delta-G solvation = -64.015982 kcal Electronic energy + Delta-G solvation = -24241.850610 eV Core-core repulsion = 20436.089219 eV Total energy + Delta-G solvation = -3805.761391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.42161 -41.98508 -40.77365 -38.29274 -37.58431 -37.24299 -35.00430 -34.38639 -33.17625 -31.48187 -28.83954 -28.54144 -25.57884 -25.03717 -24.12160 -23.01392 -21.72721 -20.52531 -20.13962 -19.64286 -19.09908 -18.67883 -18.41045 -17.71931 -17.07936 -16.95008 -16.66235 -16.04780 -15.48679 -15.10737 -14.98043 -14.55137 -14.27210 -14.20972 -13.66145 -13.23637 -12.94494 -12.81858 -12.78371 -12.65621 -12.42985 -12.33963 -12.29652 -12.19312 -12.12973 -11.79991 -11.57924 -11.48179 -11.07729 -10.91564 -10.51877 -9.07501 -8.22241 -6.38391 -1.42526 -0.27745 0.00876 0.26494 1.10931 1.39494 1.42312 1.52566 1.62456 2.00837 2.36265 2.39512 2.95162 3.07542 3.20786 3.56059 3.77292 4.00078 4.42302 4.46760 4.49636 4.53071 4.67443 4.89470 5.00245 5.13868 5.21464 5.29952 5.35454 5.50357 5.54660 5.72842 5.83031 6.10863 6.21502 6.44532 6.58993 6.79834 6.92099 7.31650 8.82497 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.006258 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.529755 B = 4473.465691 C = 6057.965211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.282 3.718 4 H 0.034 0.966 5 C -0.559 4.559 6 H 0.056 0.944 7 C 0.028 3.972 8 N -0.902 5.902 9 Si 0.963 3.037 10 H -0.271 1.271 11 H -0.278 1.278 12 H -0.276 1.276 13 N -0.675 5.675 14 C 0.448 3.552 15 N -0.491 5.491 16 C 0.177 3.823 17 C 0.553 3.447 18 O -0.506 6.506 19 O -0.490 6.490 20 C -0.170 4.170 21 C 0.046 3.954 22 C -0.171 4.171 23 N 0.045 4.955 24 O -0.131 6.131 25 O -0.216 6.216 26 H 0.053 0.947 27 H 0.029 0.971 28 H 0.045 0.955 29 H 0.028 0.972 30 H 0.080 0.920 31 H 0.268 0.732 32 H 0.409 0.591 33 H 0.436 0.564 34 H 0.198 0.802 35 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.435 5.920 -4.707 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.179 3.821 4 H 0.052 0.948 5 C -0.597 4.597 6 H 0.074 0.926 7 C -0.173 4.173 8 N -0.540 5.540 9 Si 0.788 3.212 10 H -0.196 1.196 11 H -0.204 1.204 12 H -0.201 1.201 13 N -0.301 5.301 14 C 0.204 3.796 15 N -0.213 5.213 16 C 0.033 3.967 17 C 0.394 3.606 18 O -0.394 6.394 19 O -0.302 6.302 20 C -0.194 4.194 21 C 0.020 3.980 22 C -0.265 4.265 23 N 0.560 4.440 24 O -0.357 6.357 25 O -0.415 6.415 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.249 0.751 33 H 0.299 0.701 34 H 0.215 0.785 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -12.369 5.348 -3.285 13.870 hybrid contribution 1.100 0.069 -0.507 1.213 sum -11.269 5.416 -3.792 13.065 Atomic orbital electron populations 1.21658 0.96397 0.99583 1.00280 1.21789 0.94397 0.98635 1.01172 1.18682 0.93614 0.89533 0.80239 0.94774 1.21501 0.91704 1.39848 1.06683 0.92607 1.25554 1.02776 0.94111 0.94872 1.69981 1.36671 1.37679 1.09624 0.85440 0.79731 0.78019 0.78032 1.19584 1.20390 1.20146 1.46043 1.11098 1.53716 1.19238 1.18114 0.87787 0.87082 0.86598 1.67796 1.05334 1.20611 1.27551 1.20548 0.89605 0.93393 0.93109 1.20129 0.83297 0.74057 0.83112 1.90912 1.20420 1.42530 1.85572 1.84747 1.51544 1.73448 1.20480 1.21942 1.03829 1.04584 0.89089 1.21540 0.87005 0.87597 1.01887 1.21793 0.97415 1.21624 0.85660 1.43459 0.99952 0.99278 1.01327 1.94466 1.70816 1.29648 1.40779 1.94563 1.42147 1.23516 1.81315 0.92821 0.95197 0.93623 0.95342 0.90133 0.92276 0.75140 0.70089 0.78522 0.78050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.87 8.53 71.98 0.61 -4.26 16 2 C -0.12 -5.68 5.45 30.59 0.17 -5.51 16 3 C 0.28 13.75 2.25 44.25 0.10 13.85 16 4 H 0.03 1.86 7.45 -2.39 -0.02 1.84 16 5 C -0.56 -29.67 8.73 25.60 0.22 -29.44 16 6 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 7 C 0.03 1.50 5.29 84.66 0.45 1.94 16 8 N -0.90 -48.93 11.29 21.45 0.24 -48.69 16 9 Si 0.96 42.01 29.54 68.60 2.03 44.04 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 13 N -0.68 -28.70 4.94 -328.09 -1.62 -30.32 16 14 C 0.45 16.34 5.78 133.25 0.77 17.11 16 15 N -0.49 -17.12 6.67 -182.42 -1.22 -18.34 16 16 C 0.18 4.79 6.74 41.82 0.28 5.07 16 17 C 0.55 13.72 8.32 70.43 0.59 14.30 16 18 O -0.51 -12.66 17.10 20.03 0.34 -12.32 16 19 O -0.49 -11.46 13.24 -55.85 -0.74 -12.20 16 20 C -0.17 -3.37 9.63 22.63 0.22 -3.15 16 21 C 0.05 0.95 9.79 22.42 0.22 1.17 16 22 C -0.17 -5.19 6.54 36.69 0.24 -4.95 16 23 N 0.04 1.48 4.29 -45.72 -0.20 1.28 16 24 O -0.13 -4.02 18.99 18.89 0.36 -3.66 16 25 O -0.22 -8.09 16.76 18.89 0.32 -7.77 16 26 H 0.05 2.19 7.78 -2.39 -0.02 2.17 16 27 H 0.03 1.14 5.73 -2.38 -0.01 1.13 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.08 4.20 5.95 -2.38 -0.01 4.19 16 31 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 32 H 0.41 17.46 6.11 -92.71 -0.57 16.89 16 33 H 0.44 5.12 9.11 -74.06 -0.67 4.45 16 34 H 0.20 2.59 7.63 -2.91 -0.02 2.57 16 35 H 0.20 2.50 8.05 -2.92 -0.02 2.48 16 Total: -1.00 -63.88 311.33 3.32 -60.56 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -0.06 Total: 21.27 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 3.87 Total: 6.14 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -2.79 Total: -96.07 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: 0.28 Total: -35.95 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -63.88 3.32 -60.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609912112.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.455 kcal (2) G-P(sol) polarization free energy of solvation -63.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds