Wall clock time and date at job start Tue Mar 31 2020 06:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47419 * 2 1 4 4 H 1.09001 * 109.46910 * 305.00763 * 3 2 1 5 5 C 1.50691 * 109.47250 * 185.00405 * 3 2 1 6 6 H 1.08003 * 119.99581 * 239.99780 * 5 3 2 7 7 C 1.37875 * 120.00524 * 60.00075 * 5 3 2 8 8 N 1.31518 * 119.99611 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00430 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47173 * 90.00069 * 9 7 5 11 11 H 1.48502 * 109.47279 * 210.00040 * 9 7 5 12 12 H 1.48503 * 109.47240 * 330.00003 * 9 7 5 13 13 N 1.46505 * 109.46670 * 65.00145 * 3 2 1 14 14 C 1.34781 * 119.99963 * 274.99879 * 13 3 2 15 15 O 1.21544 * 120.00098 * 0.02562 * 14 13 3 16 16 C 1.47893 * 119.99806 * 180.02562 * 14 13 3 17 17 C 1.39637 * 120.01675 * 359.97438 * 16 14 13 18 18 C 1.37706 * 120.03823 * 180.02562 * 17 16 14 19 19 C 1.39675 * 120.07107 * 359.97438 * 18 17 16 20 20 C 1.47942 * 119.98764 * 180.02562 * 19 18 17 21 21 O 1.21441 * 119.99826 * 359.97438 * 20 19 18 22 22 O 1.34686 * 120.00252 * 179.97438 * 20 19 18 23 23 C 1.39466 * 120.03148 * 359.79075 * 19 18 17 24 24 C 1.38201 * 119.96079 * 0.46053 * 23 19 18 25 25 F 1.35104 * 120.03366 * 179.79280 * 24 23 19 26 26 H 1.09001 * 109.47551 * 59.99450 * 1 2 3 27 27 H 1.08999 * 109.47398 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46767 * 299.99587 * 1 2 3 29 29 H 1.09000 * 109.46767 * 240.00413 * 2 1 3 30 30 H 1.09001 * 109.47551 * 120.00550 * 2 1 3 31 31 H 0.97002 * 119.99977 * 179.97438 * 8 7 5 32 32 H 0.96991 * 119.99679 * 95.00172 * 13 3 2 33 33 H 1.08003 * 119.98177 * 0.04077 * 17 16 14 34 34 H 1.08001 * 119.96752 * 179.97438 * 18 17 16 35 35 H 0.96694 * 117.00288 * 180.02562 * 22 20 19 36 36 H 1.08001 * 120.02084 * 180.25551 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1729 9 14 6.0048 0.8813 -1.3820 10 1 6.5548 -0.3501 -0.7605 11 1 6.3828 0.9224 -2.8175 12 1 6.5569 2.0738 -0.6904 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6644 1.3671 15 8 -0.3412 2.6319 0.4325 16 6 0.0442 3.3260 2.6307 17 6 0.9357 3.3630 3.7047 18 6 0.5719 3.9785 4.8817 19 6 -0.6889 4.5671 5.0030 20 6 -1.0776 5.2283 6.2681 21 8 -0.3007 5.2588 7.2009 22 8 -2.2931 5.7965 6.3852 23 6 -1.5798 4.5361 3.9304 24 6 -1.2180 3.9143 2.7504 25 9 -2.0815 3.8798 1.7119 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8292 -0.0611 -2.9500 32 1 2.2720 2.1230 1.9978 33 1 1.9113 2.9089 3.6123 34 1 1.2622 4.0061 5.7118 35 1 -2.5016 6.2168 7.2307 36 1 -2.5531 4.9950 4.0231 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609913743.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:57 Heat of formation + Delta-G solvation = -170.830231 kcal Electronic energy + Delta-G solvation = -23262.847087 eV Core-core repulsion = 19432.533921 eV Total energy + Delta-G solvation = -3830.313166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.98447 -41.60732 -40.91659 -39.20817 -37.15469 -36.96291 -34.47822 -33.43438 -32.17214 -31.75187 -29.03034 -26.74237 -25.00186 -23.99998 -23.12774 -21.96472 -21.23392 -19.68536 -19.32818 -18.69447 -17.84850 -17.48473 -17.18816 -17.02827 -16.75628 -16.58896 -16.30395 -16.08131 -15.59471 -14.98040 -14.59782 -14.52442 -14.39253 -13.97987 -13.57528 -13.49230 -13.30592 -13.16549 -12.91424 -12.74159 -12.65846 -12.59998 -12.17685 -12.07392 -11.84959 -11.60332 -11.05940 -10.86150 -10.53067 -10.45416 -10.01292 -9.68392 -8.15450 -6.33033 -0.93979 -0.03878 1.09015 1.46963 1.47719 1.57791 1.87521 1.95539 2.25939 2.49493 2.58099 2.97897 3.14590 3.44144 3.66754 3.80361 3.88628 4.25350 4.37707 4.48338 4.55746 4.59458 4.74715 4.84562 4.89748 5.02863 5.05877 5.25121 5.41851 5.46618 5.50569 5.51363 5.59591 5.77885 5.89375 6.15542 6.73598 6.85943 6.90601 7.30852 7.46717 8.90005 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.023351 B = 0.003711 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.784498 B = 7543.417968 C = 8381.159002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.548 4.548 6 H 0.076 0.924 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.691 5.691 14 C 0.533 3.467 15 O -0.570 6.570 16 C -0.143 4.143 17 C -0.060 4.060 18 C -0.061 4.061 19 C -0.083 4.083 20 C 0.542 3.458 21 O -0.530 6.530 22 O -0.501 6.501 23 C -0.092 4.092 24 C 0.120 3.880 25 F -0.130 7.130 26 H 0.025 0.975 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.265 0.735 32 H 0.405 0.595 33 H 0.169 0.831 34 H 0.173 0.827 35 H 0.439 0.561 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.142 8.354 18.315 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.094 0.906 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.187 1.187 13 N -0.341 5.341 14 C 0.320 3.680 15 O -0.451 6.451 16 C -0.147 4.147 17 C -0.078 4.078 18 C -0.079 4.079 19 C -0.085 4.085 20 C 0.386 3.614 21 O -0.421 6.421 22 O -0.315 6.315 23 C -0.111 4.111 24 C 0.100 3.900 25 F -0.109 7.109 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.242 0.758 33 H 0.187 0.813 34 H 0.190 0.810 35 H 0.302 0.698 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.399 8.055 17.302 20.469 hybrid contribution 0.659 0.081 -0.179 0.687 sum -6.740 8.136 17.123 20.120 Atomic orbital electron populations 1.21688 0.97202 0.99191 1.00110 1.21799 0.93510 0.99063 1.01612 1.18447 0.93917 0.89200 0.80936 0.98192 1.21562 0.91120 1.39062 1.06873 0.90603 1.25764 1.03289 0.94361 0.95006 1.70052 1.37099 1.38269 1.09883 0.85363 0.79098 0.78933 0.77053 1.19651 1.21548 1.18749 1.46170 1.14758 1.55170 1.17974 1.18530 0.82728 0.79328 0.87434 1.90801 1.52239 1.60685 1.41347 1.20537 0.95465 1.02642 0.96073 1.21442 0.99555 0.96612 0.90221 1.21466 0.94796 0.93472 0.98151 1.19103 0.95681 1.01887 0.91828 1.20477 0.79506 0.74920 0.86478 1.90912 1.52907 1.57447 1.40848 1.84507 1.33079 1.67832 1.46085 1.21481 1.02135 0.97994 0.89498 1.17840 0.87218 0.99277 0.85664 1.91576 1.68198 1.94200 1.56881 0.95605 0.93480 0.94084 0.90797 0.93660 0.92605 0.75787 0.81325 0.81001 0.69812 0.80582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.51 71.98 0.61 -5.02 16 2 C -0.12 -5.86 5.45 30.60 0.17 -5.69 16 3 C 0.28 13.92 2.24 44.24 0.10 14.02 16 4 H 0.00 0.01 7.58 -2.39 -0.02 -0.01 16 5 C -0.55 -28.01 8.73 25.60 0.22 -27.79 16 6 H 0.08 3.57 7.74 -2.91 -0.02 3.54 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.91 -51.52 11.29 21.45 0.24 -51.28 16 9 Si 0.97 41.02 29.54 68.60 2.03 43.05 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 13 N -0.69 -27.47 4.97 -448.92 -2.23 -29.71 16 14 C 0.53 21.21 6.34 86.80 0.55 21.76 16 15 O -0.57 -27.67 12.45 -3.85 -0.05 -27.72 16 16 C -0.14 -4.22 5.88 -20.01 -0.12 -4.33 16 17 C -0.06 -1.24 9.52 22.48 0.21 -1.02 16 18 C -0.06 -1.04 9.58 22.49 0.22 -0.83 16 19 C -0.08 -1.48 5.87 -20.06 -0.12 -1.60 16 20 C 0.54 8.65 8.28 70.39 0.58 9.24 16 21 O -0.53 -11.05 17.12 20.03 0.34 -10.71 16 22 O -0.50 -4.88 12.66 -55.95 -0.71 -5.59 16 23 C -0.09 -1.83 9.58 22.56 0.22 -1.61 16 24 C 0.12 3.39 7.27 22.63 0.16 3.55 16 25 F -0.13 -4.50 15.53 44.97 0.70 -3.80 16 26 H 0.02 1.26 7.84 -2.39 -0.02 1.24 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.04 1.80 5.64 -2.39 -0.01 1.78 16 29 H 0.07 4.01 5.95 -2.39 -0.01 4.00 16 30 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 32 H 0.41 12.96 6.56 -92.71 -0.61 12.36 16 33 H 0.17 2.76 6.39 -2.91 -0.02 2.74 16 34 H 0.17 2.26 7.64 -2.91 -0.02 2.24 16 35 H 0.44 0.16 9.11 -74.06 -0.67 -0.52 16 36 H 0.18 2.66 7.59 -2.91 -0.02 2.64 16 Total: -1.00 -71.85 314.07 3.46 -68.40 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -0.12 Total: 15.39 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 3.26 Total: 1.96 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -1.99 Total: -80.99 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -0.41 Total: -44.02 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.70 Total: -3.80 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -71.85 3.46 -68.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609913743.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.433 kcal (2) G-P(sol) polarization free energy of solvation -71.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds