Wall clock time and date at job start Tue Mar 31 2020 06:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21542 * 120.00222 * 359.97438 * 14 13 3 16 16 C 1.47898 * 120.00119 * 179.97438 * 14 13 3 17 17 C 1.39630 * 120.01614 * 359.72344 * 16 14 13 18 18 C 1.37711 * 120.03776 * 179.74299 * 17 16 14 19 19 C 1.39672 * 120.07157 * 0.55435 * 18 17 16 20 20 C 1.47936 * 119.98821 * 179.71743 * 19 18 17 21 21 O 1.21438 * 120.00145 * 179.97438 * 20 19 18 22 22 O 1.34686 * 119.99588 * 359.97438 * 20 19 18 23 23 C 1.39471 * 120.03051 * 359.69860 * 19 18 17 24 24 C 1.38199 * 119.96076 * 0.02562 * 23 19 18 25 25 F 1.35098 * 120.03182 * 179.97438 * 24 23 19 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 33 33 H 1.08006 * 119.98423 * 359.97438 * 17 16 14 34 34 H 1.08007 * 119.96323 * 180.27536 * 18 17 16 35 35 H 0.96710 * 116.99549 * 179.97438 * 22 20 19 36 36 H 1.07995 * 120.01832 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3413 2.6319 -0.4323 16 6 0.0440 3.3262 -2.6304 17 6 0.9378 3.3689 -3.7023 18 6 0.5721 3.9803 -4.8808 19 6 -0.6888 4.5688 -5.0021 20 6 -1.0773 5.2306 -6.2668 21 8 -2.1737 5.7420 -6.3726 22 8 -0.2150 5.2660 -7.3008 23 6 -1.5819 4.5325 -3.9314 24 6 -1.2184 3.9143 -2.7501 25 9 -2.0822 3.8787 -1.7120 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8293 -0.0605 2.9501 32 1 2.2718 2.1232 -1.9978 33 1 1.9151 2.9189 -3.6084 34 1 1.2628 4.0088 -5.7107 35 1 -0.5139 5.7093 -8.1067 36 1 -2.5569 4.9873 -4.0256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609913744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:00 Heat of formation + Delta-G solvation = -148.876873 kcal Electronic energy + Delta-G solvation = -23261.717462 eV Core-core repulsion = 19432.356265 eV Total energy + Delta-G solvation = -3829.361197 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.81298 -40.75608 -39.59711 -38.06631 -36.47167 -35.15660 -32.79103 -31.87569 -30.88222 -30.60798 -27.18638 -25.65229 -23.34283 -22.70185 -22.13018 -20.63174 -19.48654 -18.72504 -18.19806 -17.58562 -16.51358 -16.08722 -16.03465 -15.89016 -15.59334 -15.25447 -14.77400 -14.47436 -14.30807 -14.06688 -13.41280 -13.13916 -12.73986 -12.67005 -12.55446 -12.07711 -11.87358 -11.71112 -11.54910 -11.29520 -11.06335 -11.03960 -10.86810 -10.38377 -10.24636 -9.70067 -9.44715 -9.25637 -9.11940 -9.00305 -8.55817 -7.94706 -6.17494 -4.27825 0.03830 0.88818 1.99298 2.52182 3.05378 3.22200 3.28128 3.28561 3.73729 3.82012 4.07484 4.30295 4.36371 4.60161 4.67616 4.87853 5.10703 5.14791 5.32141 5.67868 5.74018 5.83769 5.85395 6.06573 6.35371 6.41282 6.43240 6.61158 6.98726 7.13875 7.26539 7.33642 7.47970 7.54596 7.64327 7.82448 8.11147 8.49928 8.68082 8.94893 9.39278 10.87790 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.003731 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.036252 B = 7501.965718 C = 8366.291943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.695 5.695 14 C 0.535 3.465 15 O -0.524 6.524 16 C -0.121 4.121 17 C -0.075 4.075 18 C -0.080 4.080 19 C -0.090 4.090 20 C 0.531 3.469 21 O -0.509 6.509 22 O -0.508 6.508 23 C -0.103 4.103 24 C 0.144 3.856 25 F -0.107 7.107 26 H 0.051 0.949 27 H 0.024 0.976 28 H 0.037 0.963 29 H 0.101 0.899 30 H 0.032 0.968 31 H 0.266 0.734 32 H 0.388 0.612 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.417 0.583 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 6.660 -16.757 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.344 5.344 14 C 0.319 3.681 15 O -0.402 6.402 16 C -0.125 4.125 17 C -0.094 4.094 18 C -0.098 4.098 19 C -0.091 4.091 20 C 0.375 3.625 21 O -0.398 6.398 22 O -0.320 6.320 23 C -0.122 4.122 24 C 0.124 3.876 25 F -0.085 7.085 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.119 0.881 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.222 0.778 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.276 0.724 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.142 6.447 -15.472 17.533 hybrid contribution 0.930 0.270 -0.655 1.169 sum -4.212 6.718 -16.128 17.972 Atomic orbital electron populations 1.21851 0.98282 0.98216 1.01243 1.21946 0.92639 0.99592 1.02458 1.18877 0.94398 0.89268 0.80547 0.92996 1.21159 0.90477 1.39484 1.06505 0.92050 1.24878 0.98686 0.94688 0.95315 1.69880 1.35317 1.37284 1.09287 0.86497 0.84692 0.78344 0.77510 1.20155 1.21107 1.20122 1.46473 1.13911 1.55159 1.18834 1.17927 0.83672 0.80206 0.86322 1.90830 1.51077 1.59065 1.39207 1.20882 0.93912 1.00502 0.97204 1.21337 0.99533 0.97257 0.91257 1.21419 0.94957 0.95176 0.98247 1.18814 0.95954 1.02895 0.91483 1.20754 0.81676 0.76448 0.83628 1.90904 1.22557 1.43586 1.82726 1.84544 1.47781 1.74160 1.25533 1.21139 1.01164 0.99263 0.90597 1.17422 0.87489 0.97835 0.84882 1.91637 1.67544 1.93818 1.55468 0.93022 0.95690 0.94436 0.88103 0.94907 0.92399 0.77831 0.83335 0.83239 0.72414 0.82810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.54 2.24 -69.08 -0.15 6.38 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -13.61 8.73 -34.44 -0.30 -13.91 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.04 11.29 55.43 0.63 -23.42 16 9 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 N -0.70 -13.62 4.97 -55.86 -0.28 -13.90 16 14 C 0.53 10.40 6.34 -12.31 -0.08 10.32 16 15 O -0.52 -12.14 12.45 5.33 0.07 -12.08 16 16 C -0.12 -1.81 5.88 -104.85 -0.62 -2.43 16 17 C -0.08 -0.83 9.52 -39.25 -0.37 -1.21 16 18 C -0.08 -0.74 9.60 -39.24 -0.38 -1.12 16 19 C -0.09 -0.95 5.87 -104.93 -0.62 -1.56 16 20 C 0.53 5.20 8.28 34.70 0.29 5.49 16 21 O -0.51 -6.36 17.12 -19.22 -0.33 -6.69 16 22 O -0.51 -3.26 12.67 -40.45 -0.51 -3.77 16 23 C -0.10 -1.23 9.56 -39.14 -0.37 -1.61 16 24 C 0.14 2.13 7.27 -39.02 -0.28 1.85 16 25 F -0.11 -1.84 15.53 2.25 0.03 -1.81 16 26 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 29 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.39 6.32 6.56 -40.82 -0.27 6.05 16 33 H 0.15 1.36 6.39 -52.48 -0.34 1.03 16 34 H 0.15 1.00 7.60 -52.48 -0.40 0.60 16 35 H 0.42 0.80 9.11 45.56 0.42 1.21 16 36 H 0.15 1.70 7.63 -52.49 -0.40 1.30 16 LS Contribution 314.07 15.07 4.73 4.73 Total: -1.00 -31.99 314.07 -6.27 -38.25 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -2.78 Total: 5.76 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -2.81 Total: -2.01 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.35 Total: -37.31 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.78 Total: -22.54 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.03 Total: -1.81 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.99 -6.27 -38.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609913744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.623 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds