Wall clock time and date at job start Tue Mar 31 2020 06:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21542 * 120.00222 * 359.97438 * 14 13 3 16 16 C 1.47898 * 120.00119 * 179.97438 * 14 13 3 17 17 C 1.39630 * 120.01614 * 359.72344 * 16 14 13 18 18 C 1.37711 * 120.03776 * 179.74299 * 17 16 14 19 19 C 1.39672 * 120.07157 * 0.55435 * 18 17 16 20 20 C 1.47936 * 119.98821 * 179.71743 * 19 18 17 21 21 O 1.21438 * 120.00145 * 179.97438 * 20 19 18 22 22 O 1.34686 * 119.99588 * 359.97438 * 20 19 18 23 23 C 1.39471 * 120.03051 * 359.69860 * 19 18 17 24 24 C 1.38199 * 119.96076 * 0.02562 * 23 19 18 25 25 F 1.35098 * 120.03182 * 179.97438 * 24 23 19 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 33 33 H 1.08006 * 119.98423 * 359.97438 * 17 16 14 34 34 H 1.08007 * 119.96323 * 180.27536 * 18 17 16 35 35 H 0.96710 * 116.99549 * 179.97438 * 22 20 19 36 36 H 1.07995 * 120.01832 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3413 2.6319 -0.4323 16 6 0.0440 3.3262 -2.6304 17 6 0.9378 3.3689 -3.7023 18 6 0.5721 3.9803 -4.8808 19 6 -0.6888 4.5688 -5.0021 20 6 -1.0773 5.2306 -6.2668 21 8 -2.1737 5.7420 -6.3726 22 8 -0.2150 5.2660 -7.3008 23 6 -1.5819 4.5325 -3.9314 24 6 -1.2184 3.9143 -2.7501 25 9 -2.0822 3.8787 -1.7120 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8293 -0.0605 2.9501 32 1 2.2718 2.1232 -1.9978 33 1 1.9151 2.9189 -3.6084 34 1 1.2628 4.0088 -5.7107 35 1 -0.5139 5.7093 -8.1067 36 1 -2.5569 4.9873 -4.0256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609913744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:00 Heat of formation + Delta-G solvation = -171.034261 kcal Electronic energy + Delta-G solvation = -23262.678279 eV Core-core repulsion = 19432.356265 eV Total energy + Delta-G solvation = -3830.322014 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.01456 -41.60393 -40.91764 -39.20481 -37.14676 -36.96339 -34.46620 -33.40571 -32.14363 -31.81607 -29.01555 -26.76316 -25.04580 -23.83316 -23.13917 -22.07782 -21.21035 -19.72969 -19.32985 -18.62425 -17.86830 -17.50071 -17.07593 -16.97244 -16.84492 -16.60083 -16.29501 -16.08820 -15.60652 -15.00856 -14.69029 -14.58403 -14.17047 -13.99514 -13.69865 -13.53535 -13.29958 -13.15749 -12.90568 -12.64644 -12.60631 -12.59447 -12.18856 -12.07199 -11.87371 -11.59162 -11.06539 -10.85829 -10.51481 -10.46232 -10.00955 -9.67976 -8.14313 -6.32158 -0.93681 -0.04318 1.09748 1.48373 1.49987 1.57612 1.82006 1.95981 2.26328 2.50449 2.58665 3.05331 3.15781 3.47724 3.62047 3.84956 3.93598 4.00627 4.43056 4.49002 4.55695 4.72582 4.77550 4.85724 4.91558 4.98097 5.05853 5.25259 5.42132 5.47647 5.51288 5.51970 5.60246 5.78429 5.90313 6.16086 6.74388 6.86771 6.91124 7.31903 7.47904 8.91020 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.003731 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.036252 B = 7501.965718 C = 8366.291943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.548 4.548 6 H 0.078 0.922 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.261 1.261 13 N -0.689 5.689 14 C 0.533 3.467 15 O -0.572 6.572 16 C -0.142 4.142 17 C -0.062 4.062 18 C -0.054 4.054 19 C -0.084 4.084 20 C 0.542 3.458 21 O -0.539 6.539 22 O -0.493 6.493 23 C -0.099 4.099 24 C 0.121 3.879 25 F -0.132 7.132 26 H 0.024 0.976 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.265 0.735 32 H 0.407 0.593 33 H 0.173 0.827 34 H 0.191 0.809 35 H 0.439 0.561 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.483 7.155 -20.376 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.096 0.904 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.186 1.186 13 N -0.339 5.339 14 C 0.319 3.681 15 O -0.453 6.453 16 C -0.146 4.146 17 C -0.080 4.080 18 C -0.072 4.072 19 C -0.085 4.085 20 C 0.387 3.613 21 O -0.431 6.431 22 O -0.307 6.307 23 C -0.118 4.118 24 C 0.100 3.900 25 F -0.110 7.110 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.243 0.757 33 H 0.190 0.810 34 H 0.208 0.792 35 H 0.302 0.698 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.172 6.961 -19.172 20.641 hybrid contribution 0.305 0.188 0.333 0.489 sum -2.867 7.148 -18.839 20.352 Atomic orbital electron populations 1.21692 0.97318 0.99158 1.00057 1.21795 0.93392 0.99097 1.01659 1.18444 0.93961 0.89169 0.80937 0.98345 1.21542 0.91055 1.39118 1.06940 0.90410 1.25776 1.03336 0.94334 0.94998 1.70049 1.37224 1.38273 1.09857 0.85410 0.79019 0.78449 0.77537 1.19646 1.21601 1.18600 1.46141 1.14672 1.55114 1.17983 1.18540 0.82766 0.79355 0.87416 1.90804 1.52317 1.60706 1.41435 1.20541 0.95206 1.02480 0.96359 1.21591 0.99493 0.96517 0.90404 1.21786 0.94611 0.92552 0.98251 1.19029 0.96020 1.02059 0.91437 1.20477 0.81352 0.75643 0.83873 1.90915 1.23987 1.44899 1.83280 1.84480 1.46523 1.73890 1.25792 1.21150 1.01854 0.98754 0.90044 1.17704 0.87464 0.99493 0.85316 1.91567 1.68382 1.94236 1.56861 0.95719 0.93493 0.94114 0.90825 0.93520 0.92627 0.75652 0.80975 0.79229 0.69756 0.82371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.51 71.98 0.61 -5.05 16 2 C -0.12 -5.81 5.45 30.59 0.17 -5.64 16 3 C 0.28 13.83 2.24 44.24 0.10 13.93 16 4 H 0.00 -0.08 7.58 -2.38 -0.02 -0.10 16 5 C -0.55 -27.72 8.73 25.60 0.22 -27.50 16 6 H 0.08 3.58 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.82 5.29 84.66 0.45 1.27 16 8 N -0.92 -51.46 11.29 21.45 0.24 -51.22 16 9 Si 0.97 40.56 29.54 68.60 2.03 42.58 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 11 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 13 N -0.69 -27.01 4.97 -448.92 -2.23 -29.25 16 14 C 0.53 21.18 6.34 86.80 0.55 21.73 16 15 O -0.57 -28.06 12.45 -3.85 -0.05 -28.11 16 16 C -0.14 -4.17 5.88 -20.01 -0.12 -4.29 16 17 C -0.06 -1.17 9.52 22.48 0.21 -0.95 16 18 C -0.05 -0.76 9.60 22.49 0.22 -0.54 16 19 C -0.08 -1.50 5.87 -20.06 -0.12 -1.61 16 20 C 0.54 8.68 8.28 70.39 0.58 9.26 16 21 O -0.54 -12.20 17.12 20.04 0.34 -11.86 16 22 O -0.49 -3.90 12.67 -55.95 -0.71 -4.61 16 23 C -0.10 -2.27 9.56 22.56 0.22 -2.06 16 24 C 0.12 3.59 7.27 22.63 0.16 3.76 16 25 F -0.13 -4.85 15.53 44.97 0.70 -4.15 16 26 H 0.02 1.21 7.84 -2.39 -0.02 1.19 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.04 1.79 5.64 -2.38 -0.01 1.78 16 29 H 0.07 3.99 5.95 -2.39 -0.01 3.97 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.06 16 31 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 32 H 0.41 12.54 6.56 -92.71 -0.61 11.93 16 33 H 0.17 2.42 6.39 -2.91 -0.02 2.40 16 34 H 0.19 1.25 7.60 -2.91 -0.02 1.23 16 35 H 0.44 -0.39 9.11 -74.05 -0.67 -1.07 16 36 H 0.16 3.43 7.63 -2.91 -0.02 3.41 16 Total: -1.00 -73.59 314.07 3.46 -70.13 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -0.12 Total: 14.18 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 3.26 Total: 2.30 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -1.99 Total: -80.47 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -0.41 Total: -44.58 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.70 Total: -4.15 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.58 kcal Total: -73.59 3.46 -70.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609913744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.906 kcal (2) G-P(sol) polarization free energy of solvation -73.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds