Wall clock time and date at job start Tue Mar 31 2020 07:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48496 * 109.47196 * 270.00015 * 3 2 1 5 5 H 1.48498 * 109.47191 * 30.00179 * 3 2 1 6 6 H 1.48500 * 109.47154 * 150.00010 * 3 2 1 7 7 C 1.37878 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00097 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.47322 * 180.02562 * 9 7 2 11 11 C 1.42897 * 114.00017 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47077 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47440 * 65.06698 * 12 11 10 14 14 C 1.47477 * 110.99699 * 65.76930 * 13 12 11 15 15 C 1.53517 * 87.93033 * 138.70424 * 14 13 12 16 16 C 1.47480 * 111.00222 * 161.74603 * 13 12 11 17 17 H 1.09002 * 113.47343 * 336.06027 * 16 13 12 18 18 C 1.50695 * 113.47786 * 106.47180 * 16 13 12 19 19 C 1.38245 * 119.98372 * 39.72536 * 18 16 13 20 20 C 1.38215 * 120.01073 * 179.72695 * 19 18 16 21 21 C 1.38358 * 119.98399 * 0.54744 * 20 19 18 22 22 Cl 1.73602 * 120.01067 * 179.74822 * 21 20 19 23 23 C 1.38349 * 119.97707 * 359.72505 * 21 20 19 24 24 C 1.38219 * 119.98238 * 0.02562 * 23 21 20 25 25 H 0.97009 * 119.99813 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47121 * 59.99312 * 9 7 2 27 27 H 1.09005 * 109.46683 * 299.99527 * 9 7 2 28 28 H 1.09000 * 109.47016 * 60.00225 * 11 10 9 29 29 H 1.08994 * 109.47089 * 299.99684 * 11 10 9 30 30 H 1.09008 * 109.47214 * 305.06805 * 12 11 10 31 31 H 1.08998 * 109.47199 * 185.06722 * 12 11 10 32 32 H 1.08989 * 113.48147 * 253.47169 * 14 13 12 33 33 H 1.09006 * 113.47753 * 23.94806 * 14 13 12 34 34 H 1.09000 * 114.16672 * 87.62595 * 15 14 13 35 35 H 1.08994 * 114.17154 * 220.32908 * 15 14 13 36 36 H 1.07997 * 119.99377 * 0.02562 * 19 18 16 37 37 H 1.07998 * 120.01082 * 180.27102 * 20 19 18 38 38 H 1.07996 * 120.00936 * 179.97438 * 23 21 20 39 39 H 1.08002 * 119.99136 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1794 -3.5854 0.0017 11 6 1.5648 -4.8754 0.0024 12 6 2.6477 -5.9563 0.0030 13 7 3.4068 -5.8883 1.2589 14 6 2.5545 -6.2368 2.4110 15 6 3.7384 -7.0355 2.9742 16 6 4.1463 -7.1417 1.4981 17 1 3.7152 -8.0040 0.9894 18 6 5.6310 -7.0149 1.2735 19 6 6.2966 -5.8741 1.6820 20 6 7.6593 -5.7596 1.4814 21 6 8.3553 -6.7822 0.8615 22 17 10.0658 -6.6363 0.6033 23 6 7.6877 -7.9212 0.4478 24 6 6.3258 -8.0366 0.6536 25 1 -0.4850 0.8401 0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 0.9451 -4.9831 -0.8878 29 1 0.9444 -4.9818 0.8922 30 1 3.3221 -5.7955 -0.8382 31 1 2.1818 -6.9375 -0.0872 32 1 2.2796 -5.3780 3.0233 33 1 1.6987 -6.8577 2.1460 34 1 4.4231 -6.4475 3.5853 35 1 3.4594 -7.9857 3.4296 36 1 5.7525 -5.0744 2.1622 37 1 8.1800 -4.8703 1.8044 38 1 8.2304 -8.7194 -0.0365 39 1 5.8046 -8.9259 0.3312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000549864708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:23 Heat of formation + Delta-G solvation = -16.237369 kcal Electronic energy + Delta-G solvation = -20773.007280 eV Core-core repulsion = 17513.567233 eV Total energy + Delta-G solvation = -3259.440047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.108 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61941 -39.68063 -38.38852 -37.35050 -34.99440 -33.05801 -32.02274 -31.63927 -29.44015 -27.48513 -26.45800 -24.49956 -23.82578 -23.18582 -22.36347 -20.44436 -18.65078 -18.24227 -17.51105 -17.39321 -16.77879 -16.50417 -16.18428 -15.87882 -15.58075 -15.30211 -14.80184 -14.39138 -14.34264 -14.09563 -13.86052 -13.55074 -13.37508 -13.01126 -12.89822 -12.69805 -12.48153 -12.44969 -12.31939 -12.16429 -11.95241 -11.75539 -11.61601 -11.38054 -11.26084 -10.87228 -10.21870 -9.94968 -9.75752 -9.46405 -8.33385 -6.45321 0.16132 0.39130 1.17345 1.38448 1.41295 1.53582 2.33966 2.59944 3.00280 3.09426 3.23927 3.55191 3.81874 3.89423 4.00490 4.01293 4.07426 4.26633 4.36986 4.38659 4.46433 4.53034 4.58234 4.62222 4.76574 4.78146 4.85317 4.96479 4.98767 5.07145 5.16646 5.18133 5.29509 5.32518 5.40785 5.54032 5.67079 5.89275 5.95929 6.19464 6.55221 6.84322 7.26987 8.79054 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.014097 B = 0.003448 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.797620 B = 8117.618216 C = 9595.394551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.211 3.789 10 O -0.398 6.398 11 C 0.057 3.943 12 C 0.035 3.965 13 N -0.481 5.481 14 C -0.007 4.007 15 C -0.120 4.120 16 C 0.064 3.936 17 H 0.110 0.890 18 C -0.070 4.070 19 C -0.089 4.089 20 C -0.126 4.126 21 C -0.047 4.047 22 Cl -0.077 7.077 23 C -0.116 4.116 24 C -0.098 4.098 25 H 0.271 0.729 26 H -0.017 1.017 27 H -0.017 1.017 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.152 0.848 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.419 -20.994 4.093 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.076 0.924 9 C 0.136 3.864 10 O -0.318 6.318 11 C -0.020 4.020 12 C -0.093 4.093 13 N -0.204 5.204 14 C -0.136 4.136 15 C -0.158 4.158 16 C -0.045 4.045 17 H 0.127 0.873 18 C -0.071 4.071 19 C -0.107 4.107 20 C -0.144 4.144 21 C -0.073 4.073 22 Cl -0.048 7.048 23 C -0.134 4.134 24 C -0.117 4.117 25 H 0.080 0.920 26 H 0.001 0.999 27 H 0.000 1.000 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.141 0.859 37 H 0.151 0.849 38 H 0.169 0.831 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 12.929 -20.181 3.999 24.299 hybrid contribution -0.612 0.536 -0.262 0.854 sum 12.318 -19.646 3.738 23.487 Atomic orbital electron populations 1.70067 1.07705 1.28631 1.50603 1.25942 0.95964 1.03311 0.93901 0.85205 0.78368 0.77103 0.78885 1.19230 1.19688 1.19055 1.21371 0.93954 0.90974 1.52120 0.92383 1.19770 0.88596 0.84944 0.93105 1.87907 1.34812 1.13983 1.95065 1.22562 0.95477 0.84556 0.99434 1.22619 0.95464 0.96611 0.94617 1.69067 1.16956 1.32176 1.02186 1.23759 0.96656 0.99521 0.93653 1.23182 0.96709 1.01399 0.94462 1.22498 0.90869 0.93335 0.97758 0.87258 1.19857 0.95161 0.94256 0.97834 1.21034 0.93008 0.97868 0.98830 1.21190 0.94546 0.98728 0.99961 1.21087 0.85039 0.97562 1.03633 1.98358 1.12952 1.98057 1.95455 1.21254 0.94846 0.96872 1.00445 1.21282 0.93332 0.99428 0.97648 0.92019 0.99915 0.99960 0.93634 0.94147 0.91079 0.89576 0.91647 0.89575 0.89587 0.87591 0.85949 0.84920 0.83057 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.98 45.45 29.54 68.60 2.03 47.47 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.55 -33.64 9.43 25.60 0.24 -33.40 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.21 12.24 5.69 71.24 0.41 12.64 16 10 O -0.40 -20.20 10.27 -148.98 -1.53 -21.73 16 11 C 0.06 2.12 6.03 71.98 0.43 2.56 16 12 C 0.04 1.00 5.34 86.30 0.46 1.46 16 13 N -0.48 -13.44 5.70 -906.57 -5.17 -18.61 16 14 C -0.01 -0.17 6.52 83.58 0.54 0.38 16 15 C -0.12 -2.13 7.91 30.94 0.24 -1.89 16 16 C 0.06 1.26 3.27 41.45 0.14 1.39 16 17 H 0.11 1.58 7.57 -2.39 -0.02 1.56 16 18 C -0.07 -1.50 5.38 -19.86 -0.11 -1.61 16 19 C -0.09 -2.23 8.88 22.27 0.20 -2.03 16 20 C -0.13 -2.98 9.83 22.29 0.22 -2.76 16 21 C -0.05 -1.00 6.32 22.32 0.14 -0.86 16 22 Cl -0.08 -1.55 28.96 -2.72 -0.08 -1.63 16 23 C -0.12 -2.07 9.83 22.29 0.22 -1.85 16 24 C -0.10 -1.67 9.71 22.26 0.22 -1.46 16 25 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 26 H -0.02 -1.02 8.14 -2.39 -0.02 -1.03 16 27 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.04 1.46 7.23 -2.39 -0.02 1.44 16 30 H 0.07 2.19 8.14 -2.38 -0.02 2.18 16 31 H 0.09 1.75 7.56 -2.39 -0.02 1.73 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.09 1.65 7.84 -2.38 -0.02 1.63 16 34 H 0.09 1.70 7.68 -2.39 -0.02 1.68 16 35 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.12 3.48 7.83 -2.91 -0.02 3.46 16 37 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.16 1.68 8.05 -2.91 -0.02 1.66 16 Total: -1.00 -70.81 343.52 0.38 -70.43 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.03 Total: 7.19 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 3.82 Total: -26.54 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -4.88 Total: -75.20 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -1.53 Total: -21.73 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -70.81 0.38 -70.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549864708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.196 kcal (2) G-P(sol) polarization free energy of solvation -70.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds