Wall clock time and date at job start Tue Mar 31 2020 07:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76202 * 103.00112 * 2 1 4 4 C 1.35127 * 125.51919 * 180.02562 * 3 2 1 5 5 C 1.47042 * 105.89215 * 180.02562 * 4 3 2 6 6 C 1.47287 * 127.15417 * 179.97438 * 5 4 3 7 7 O 1.21656 * 120.00529 * 147.15579 * 6 5 4 8 8 N 1.34782 * 120.00104 * 327.16390 * 6 5 4 9 9 C 1.36955 * 120.00167 * 182.20351 * 8 6 5 10 10 H 1.08002 * 120.00244 * 136.37195 * 9 8 6 11 11 C 1.38972 * 120.00171 * 316.64591 * 9 8 6 12 12 N 1.31410 * 120.00034 * 162.70598 * 11 9 8 13 13 Si 1.86808 * 119.99754 * 342.70821 * 11 9 8 14 14 H 1.48495 * 109.47005 * 95.49607 * 13 11 9 15 15 H 1.48494 * 109.46754 * 215.49790 * 13 11 9 16 16 H 1.48494 * 109.46966 * 335.50062 * 13 11 9 17 17 C 1.46499 * 119.99416 * 2.19647 * 8 6 5 18 18 C 1.54262 * 110.03244 * 230.08418 * 17 8 6 19 19 C 1.54962 * 104.16445 * 217.13861 * 18 17 8 20 20 C 1.54890 * 102.77272 * 37.89180 * 19 18 17 21 21 C 1.53882 * 110.02946 * 112.87460 * 17 8 6 22 22 C 1.36452 * 105.69644 * 0.25966 * 5 4 3 23 23 O 1.33959 * 108.54232 * 359.57566 * 22 5 4 24 24 H 1.09000 * 109.46922 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 300.00286 * 1 2 3 26 26 H 1.09003 * 109.47084 * 59.99789 * 1 2 3 27 27 H 1.08007 * 127.05339 * 0.02562 * 4 3 2 28 28 H 0.97003 * 119.99813 * 180.02562 * 12 11 9 29 29 H 1.08994 * 110.02332 * 351.47640 * 17 8 6 30 30 H 1.09004 * 110.48847 * 335.79122 * 18 17 8 31 31 H 1.09003 * 110.48820 * 98.43335 * 18 17 8 32 32 H 1.08997 * 110.72332 * 279.57620 * 19 18 17 33 33 H 1.09009 * 110.92629 * 156.29231 * 19 18 17 34 34 H 1.09008 * 110.48481 * 203.40422 * 20 19 18 35 35 H 1.08999 * 110.60373 * 80.81976 * 20 19 18 36 36 H 1.09007 * 110.02562 * 238.56795 * 21 17 8 37 37 H 1.08998 * 110.03070 * 359.97438 * 21 17 8 38 38 H 1.07994 * 125.72382 * 179.71873 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.4587 2.2344 -0.0005 5 6 3.2890 3.6950 0.0004 6 6 4.3524 4.7140 0.0008 7 8 4.1792 5.7743 -0.5700 8 7 5.5177 4.4719 0.6334 9 6 6.4891 5.4365 0.6723 10 1 7.0206 5.6308 1.5922 11 6 6.7870 6.1692 -0.4704 12 7 7.4513 7.2988 -0.3720 13 14 6.2432 5.5483 -2.1462 14 1 4.9539 6.1858 -2.5157 15 1 7.2733 5.8912 -3.1592 16 1 6.0699 4.0744 -2.0956 17 6 5.7449 3.1768 1.2794 18 6 6.2411 3.3871 2.7248 19 6 7.2782 2.2557 2.9382 20 6 7.9859 2.1759 1.5627 21 6 6.8536 2.4067 0.5407 22 6 1.9416 3.9101 0.0072 23 8 1.3206 2.7231 0.0010 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.3900 1.6873 -0.0013 28 1 7.6589 7.8104 -1.1695 29 1 4.8237 2.5943 1.2820 30 1 6.7152 4.3633 2.8272 31 1 5.4159 3.2870 3.4299 32 1 6.7799 1.3147 3.1714 33 1 7.9874 2.5203 3.7226 34 1 8.4336 1.1923 1.4204 35 1 8.7432 2.9549 1.4753 36 1 6.4705 1.4500 0.1855 37 1 7.2222 2.9963 -0.2986 38 1 1.4571 4.8752 0.0140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601205708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:43 Heat of formation + Delta-G solvation = -18.652097 kcal Electronic energy + Delta-G solvation = -22457.664324 eV Core-core repulsion = 19200.163273 eV Total energy + Delta-G solvation = -3257.501051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.54341 -40.96021 -38.63589 -35.46479 -34.50542 -33.49535 -30.98570 -29.80110 -29.53893 -28.74000 -27.21845 -24.02422 -23.18870 -21.79120 -21.38501 -20.86556 -19.81546 -18.24609 -17.69733 -17.41732 -17.13590 -17.06924 -16.10026 -15.86877 -15.77293 -15.33996 -15.12392 -14.78081 -14.44018 -14.30782 -14.11907 -13.99022 -13.62582 -13.31509 -13.13232 -12.68889 -12.49883 -12.26781 -11.94065 -11.85034 -11.83062 -11.75988 -11.56521 -11.28909 -11.01958 -10.82435 -10.61926 -10.39722 -9.57018 -8.43864 -8.42338 -6.17619 0.08589 0.36794 0.81135 0.97992 1.23567 1.32671 1.47108 2.16606 2.33896 2.47124 2.70588 3.05885 3.69580 3.81944 3.86775 3.91899 4.07000 4.22917 4.26205 4.30608 4.45959 4.58038 4.62788 4.70591 4.73216 4.80405 4.87989 4.91885 5.03927 5.08466 5.15196 5.26813 5.38012 5.47446 5.58741 5.69776 5.72967 5.91523 6.74049 6.85455 7.31119 7.82503 8.64142 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.006482 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.187572 B = 4318.565619 C = 5395.229890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.017 6.017 3 C -0.030 4.030 4 C -0.176 4.176 5 C -0.229 4.229 6 C 0.504 3.496 7 O -0.594 6.594 8 N -0.450 5.450 9 C -0.325 4.325 10 H 0.079 0.921 11 C 0.048 3.952 12 N -0.907 5.907 13 Si 0.960 3.040 14 H -0.283 1.283 15 H -0.307 1.307 16 H -0.270 1.270 17 C 0.101 3.899 18 C -0.132 4.132 19 C -0.107 4.107 20 C -0.114 4.114 21 C -0.134 4.134 22 C 0.038 3.962 23 O -0.167 6.167 24 H 0.140 0.860 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.172 0.828 28 H 0.272 0.728 29 H 0.114 0.886 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.494 -19.739 4.020 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.220 5.780 3 C -0.188 4.188 4 C -0.203 4.203 5 C -0.235 4.235 6 C 0.296 3.704 7 O -0.482 6.482 8 N -0.169 5.169 9 C -0.452 4.452 10 H 0.097 0.903 11 C -0.156 4.156 12 N -0.545 5.545 13 Si 0.793 3.207 14 H -0.211 1.211 15 H -0.237 1.237 16 H -0.195 1.195 17 C -0.002 4.002 18 C -0.170 4.170 19 C -0.145 4.145 20 C -0.152 4.152 21 C -0.172 4.172 22 C -0.036 4.036 23 O -0.064 6.064 24 H 0.158 0.842 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.189 0.811 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -11.139 -20.159 3.707 23.328 hybrid contribution -0.376 2.007 -1.002 2.274 sum -11.515 -18.152 2.705 21.665 Atomic orbital electron populations 1.23788 0.91665 1.09104 1.07044 1.85741 1.09653 0.89450 1.93166 1.24494 0.90136 0.94060 1.10141 1.22836 0.97851 0.91186 1.08462 1.21536 0.94737 0.93873 1.13317 1.18011 0.82380 0.86411 0.83581 1.90569 1.80888 1.28583 1.48142 1.43752 1.11589 1.13273 1.48322 1.18619 1.15978 1.13707 0.96916 0.90325 1.25863 0.93650 0.94309 1.01817 1.69798 1.40886 1.12882 1.30971 0.85537 0.76284 0.78875 0.80046 1.21090 1.23685 1.19548 1.22686 1.00072 0.84169 0.93232 1.22681 0.99488 0.99989 0.94882 1.22414 0.97114 0.98198 0.96773 1.22251 0.96736 1.01641 0.94545 1.22505 0.96580 0.99383 0.98773 1.24592 0.90499 0.88363 1.00125 1.83954 1.36345 1.13570 1.72535 0.84229 0.88791 0.89125 0.81059 0.91840 0.86833 0.93018 0.90998 0.89031 0.90784 0.89297 0.93595 0.89717 0.94226 0.74837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.45 113.37 1.18 -0.48 16 2 S -0.02 -0.31 22.74 -56.49 -1.28 -1.59 16 3 C -0.03 -0.81 7.32 67.10 0.49 -0.31 16 4 C -0.18 -5.67 8.60 23.86 0.21 -5.46 16 5 C -0.23 -9.01 5.70 -19.00 -0.11 -9.12 16 6 C 0.50 25.41 5.89 86.62 0.51 25.92 16 7 O -0.59 -34.90 12.28 -4.21 -0.05 -34.95 16 8 N -0.45 -22.27 2.06 -613.18 -1.26 -23.53 16 9 C -0.33 -18.82 8.57 84.07 0.72 -18.10 16 10 H 0.08 4.80 6.42 -2.91 -0.02 4.78 16 11 C 0.05 2.94 4.91 84.93 0.42 3.36 16 12 N -0.91 -58.02 13.96 21.67 0.30 -57.72 16 13 Si 0.96 53.85 24.61 68.60 1.69 55.54 16 14 H -0.28 -16.98 6.30 99.48 0.63 -16.35 16 15 H -0.31 -16.58 7.11 99.48 0.71 -15.88 16 16 H -0.27 -14.41 7.07 99.48 0.70 -13.71 16 17 C 0.10 3.83 2.62 45.72 0.12 3.95 16 18 C -0.13 -4.51 6.39 31.69 0.20 -4.31 16 19 C -0.11 -2.79 6.91 31.91 0.22 -2.57 16 20 C -0.11 -3.33 6.83 31.67 0.22 -3.11 16 21 C -0.13 -4.65 6.05 31.32 0.19 -4.46 16 22 C 0.04 1.21 12.03 67.40 0.81 2.02 16 23 O -0.17 -4.63 10.19 0.60 0.01 -4.63 16 24 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.17 5.15 5.51 -2.91 -0.02 5.13 16 28 H 0.27 16.52 8.31 -92.71 -0.77 15.75 16 29 H 0.11 3.85 3.64 -2.39 -0.01 3.85 16 30 H 0.05 2.14 5.89 -2.38 -0.01 2.13 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 2.37 7.34 -2.38 -0.02 2.35 16 37 H 0.04 1.69 7.58 -2.39 -0.02 1.67 16 38 H 0.24 6.40 8.06 -2.91 -0.02 6.38 16 Total: -1.00 -76.97 316.46 5.57 -71.40 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.99 Total: 8.16 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 5.18 Total: -12.68 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -0.96 Total: -81.25 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -0.05 Total: -39.57 kcal Atomic # 14 Polarization: 53.85 SS G_CDS: 1.69 Total: 55.54 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -1.28 Total: -1.59 kcal Total: -76.97 5.57 -71.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601205708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.748 kcal (2) G-P(sol) polarization free energy of solvation -76.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds