Wall clock time and date at job start Tue Mar 31 2020 08:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48502 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47232 * 300.00064 * 3 2 1 6 6 H 1.48500 * 109.47387 * 59.99949 * 3 2 1 7 7 C 1.37877 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99689 * 175.14300 * 7 2 1 9 9 C 1.50696 * 119.99957 * 355.42608 * 7 2 1 10 10 C 1.53003 * 115.54453 * 274.92366 * 9 7 2 11 11 N 1.46895 * 109.47038 * 296.30160 * 10 9 7 12 12 C 1.46910 * 110.99971 * 174.87619 * 11 10 9 13 13 C 1.53004 * 109.47185 * 180.02562 * 12 11 10 14 14 H 1.09006 * 109.46983 * 59.99845 * 13 12 11 15 15 O 1.42898 * 109.47163 * 300.00457 * 13 12 11 16 16 C 1.50698 * 109.47025 * 180.02562 * 13 12 11 17 17 C 1.38246 * 119.98474 * 84.72695 * 16 13 12 18 18 C 1.38215 * 120.00900 * 179.72484 * 17 16 13 19 19 C 1.38345 * 119.98618 * 0.54696 * 18 17 16 20 20 Cl 1.73604 * 120.01268 * 179.74789 * 19 18 17 21 21 C 1.38353 * 119.97677 * 359.72572 * 19 18 17 22 22 C 1.38213 * 119.98733 * 0.02562 * 21 19 18 23 23 C 1.52992 * 117.50274 * 129.25327 * 9 7 2 24 24 C 1.52997 * 117.50316 * 60.59202 * 9 7 2 25 25 H 0.97010 * 119.99605 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47377 * 56.31067 * 10 9 7 27 27 H 1.09010 * 109.46900 * 176.30945 * 10 9 7 28 28 H 1.00901 * 111.00867 * 298.83269 * 11 10 9 29 29 H 1.08991 * 109.47043 * 300.00189 * 12 11 10 30 30 H 1.09002 * 109.46570 * 60.00438 * 12 11 10 31 31 H 0.96710 * 114.00081 * 299.99833 * 15 13 12 32 32 H 1.07998 * 119.99275 * 359.97438 * 17 16 13 33 33 H 1.07998 * 120.00304 * 180.27211 * 18 17 16 34 34 H 1.07998 * 120.00866 * 179.97438 * 21 19 18 35 35 H 1.07996 * 119.99524 * 180.02562 * 22 21 19 36 36 H 1.08998 * 117.49867 * 359.97438 * 23 9 7 37 37 H 1.09002 * 117.49985 * 145.01605 * 23 9 7 38 38 H 1.09005 * 117.50012 * 214.98240 * 24 9 7 39 39 H 1.09000 * 117.49705 * 359.97308 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9526 1.5267 11 7 2.1624 -3.2129 2.2640 12 6 1.8832 -3.5357 3.6698 13 6 3.1996 -3.7993 4.4037 14 1 3.8283 -2.9102 4.3529 15 8 3.8766 -4.8970 3.7882 16 6 2.9132 -4.1309 5.8455 17 6 2.5991 -5.4278 6.2070 18 6 2.3419 -5.7336 7.5301 19 6 2.3877 -4.7395 8.4911 20 17 2.0583 -5.1216 10.1522 21 6 2.6966 -3.4407 8.1279 22 6 2.9586 -3.1370 6.8053 23 6 1.5729 -3.5802 -0.9272 24 6 0.2452 -2.8218 -0.9977 25 1 -0.4850 0.8402 -0.0004 26 1 0.3521 -2.1721 2.0341 27 1 0.3236 -3.8649 1.4847 28 1 2.6970 -3.9468 1.8239 29 1 1.3673 -2.6982 4.1392 30 1 1.2543 -4.4245 3.7204 31 1 3.3746 -5.7235 3.7970 32 1 2.5586 -6.2028 5.4559 33 1 2.1008 -6.7476 7.8129 34 1 2.7321 -2.6641 8.8776 35 1 3.2002 -2.1233 6.5217 36 1 2.3244 -3.3504 -1.6825 37 1 1.5428 -4.6176 -0.5939 38 1 -0.6579 -3.3605 -0.7108 39 1 0.1232 -2.0928 -1.7989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819280310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:10 Heat of formation + Delta-G solvation = -10.792321 kcal Electronic energy + Delta-G solvation = -20792.904535 eV Core-core repulsion = 17533.700603 eV Total energy + Delta-G solvation = -3259.203932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.97691 -37.71536 -36.82603 -36.36704 -33.87398 -31.82094 -31.62460 -31.24511 -27.97436 -25.57416 -24.33976 -23.12755 -22.40100 -21.17642 -20.90076 -18.97619 -17.91971 -16.59889 -16.29344 -16.09265 -15.29800 -14.99122 -14.49576 -14.41551 -14.00215 -13.86384 -13.71770 -13.47108 -13.29588 -12.82329 -12.45331 -12.01016 -11.79362 -11.75157 -11.49068 -11.24785 -11.10937 -10.95869 -10.87721 -10.65112 -10.41877 -10.20077 -10.09237 -9.33828 -9.31188 -8.88622 -8.80151 -8.30939 -8.01355 -7.58927 -5.92318 -3.94383 0.84552 1.02123 1.85763 3.32415 3.34946 3.43105 3.48785 4.30456 4.38847 4.48801 4.50596 4.60412 4.99044 5.02891 5.15330 5.23479 5.32334 5.37452 5.41198 5.51498 5.63980 5.90499 5.91870 5.95308 5.96795 6.19163 6.32596 6.35367 6.49695 6.51443 6.62566 6.77837 6.88718 7.17812 7.53221 7.54026 7.57382 7.91727 8.00397 8.16256 8.58902 9.05370 9.68751 11.16840 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.020831 B = 0.003113 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.809725 B = 8993.493563 C = 9654.962809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.466 4.466 8 H 0.060 0.940 9 C 0.049 3.951 10 C 0.108 3.892 11 N -0.664 5.664 12 C 0.036 3.964 13 C 0.147 3.853 14 H 0.121 0.879 15 O -0.548 6.548 16 C -0.102 4.102 17 C -0.101 4.101 18 C -0.108 4.108 19 C -0.039 4.039 20 Cl -0.076 7.076 21 C -0.108 4.108 22 C -0.095 4.095 23 C -0.216 4.216 24 C -0.153 4.153 25 H 0.256 0.744 26 H 0.071 0.929 27 H -0.005 1.005 28 H 0.338 0.662 29 H 0.079 0.921 30 H 0.020 0.980 31 H 0.367 0.633 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.425 -11.022 16.044 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.504 4.504 8 H 0.078 0.922 9 C 0.048 3.952 10 C -0.020 4.020 11 N -0.295 5.295 12 C -0.094 4.094 13 C 0.088 3.912 14 H 0.138 0.862 15 O -0.353 6.353 16 C -0.103 4.103 17 C -0.119 4.119 18 C -0.127 4.127 19 C -0.065 4.065 20 Cl -0.047 7.047 21 C -0.126 4.126 22 C -0.113 4.113 23 C -0.254 4.254 24 C -0.191 4.191 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.013 0.987 28 H 0.156 0.844 29 H 0.097 0.903 30 H 0.038 0.962 31 H 0.214 0.786 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.817 -9.802 16.225 19.336 hybrid contribution -0.631 -0.396 0.291 0.800 sum 3.186 -10.198 16.516 19.670 Atomic orbital electron populations 1.70035 1.05781 1.25943 1.50804 1.24949 0.94776 0.98765 0.95123 0.86591 0.80383 0.84044 0.77268 1.19714 1.21430 1.21199 1.20353 0.92625 0.88398 1.49066 0.92225 1.18818 0.97700 0.93098 0.85566 1.21543 0.88438 0.96297 0.95738 1.60176 1.21627 1.47978 0.99690 1.22559 0.94884 0.99723 0.92269 1.21013 0.94604 0.90398 0.85176 0.86157 1.86695 1.46956 1.20617 1.81041 1.20817 0.98273 0.93892 0.97319 1.20848 0.99152 0.96387 0.95551 1.20989 1.00606 0.98936 0.92156 1.20938 1.04898 0.95186 0.85495 1.98368 1.93921 1.94610 1.17831 1.21069 0.99772 0.94839 0.96963 1.21051 0.98813 0.99840 0.91623 1.22992 1.00579 0.95447 1.06336 1.22497 0.90553 1.01569 1.04494 0.93446 0.91071 0.98741 0.84382 0.90303 0.96178 0.78572 0.85276 0.84959 0.84812 0.84474 0.90536 0.92307 0.92384 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 12.65 55.43 0.70 -24.42 16 2 C 0.07 1.79 5.43 -17.82 -0.10 1.69 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.47 -12.68 8.71 -34.44 -0.30 -12.98 16 8 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 9 C 0.05 1.18 1.64 -155.67 -0.25 0.93 16 10 C 0.11 2.35 5.51 -3.83 -0.02 2.33 16 11 N -0.66 -12.43 6.35 -113.77 -0.72 -13.15 16 12 C 0.04 0.53 5.37 -3.82 -0.02 0.51 16 13 C 0.15 1.85 3.48 -27.88 -0.10 1.75 16 14 H 0.12 1.64 8.05 -51.93 -0.42 1.22 16 15 O -0.55 -6.83 12.47 -35.23 -0.44 -7.27 16 16 C -0.10 -1.11 5.00 -104.62 -0.52 -1.64 16 17 C -0.10 -0.97 9.33 -39.59 -0.37 -1.34 16 18 C -0.11 -1.02 9.83 -39.55 -0.39 -1.40 16 19 C -0.04 -0.39 6.32 -39.50 -0.25 -0.64 16 20 Cl -0.08 -0.71 28.96 -51.86 -1.50 -2.21 16 21 C -0.11 -1.06 9.83 -39.55 -0.39 -1.45 16 22 C -0.09 -0.99 9.68 -39.59 -0.38 -1.37 16 23 C -0.22 -4.70 9.96 -26.70 -0.27 -4.96 16 24 C -0.15 -3.62 9.15 -26.70 -0.24 -3.86 16 25 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 26 H 0.07 1.72 8.13 -51.93 -0.42 1.30 16 27 H -0.01 -0.11 8.10 -51.92 -0.42 -0.53 16 28 H 0.34 6.10 8.18 -39.29 -0.32 5.78 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.37 3.26 7.39 45.56 0.34 3.60 16 32 H 0.13 0.96 6.62 -52.49 -0.35 0.62 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 36 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.08 2.16 8.14 -51.93 -0.42 1.74 16 LS Contribution 346.16 15.07 5.22 5.22 Total: -1.00 -29.48 346.16 -10.31 -39.79 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -4.94 Total: 8.08 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -3.60 Total: -22.42 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.02 Total: -37.57 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.44 Total: -7.27 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.48 -10.31 -39.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819280310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.997 kcal (2) G-P(sol) polarization free energy of solvation -29.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds