Wall clock time and date at job start Tue Mar 31 2020 08:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48502 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47232 * 300.00064 * 3 2 1 6 6 H 1.48500 * 109.47387 * 59.99949 * 3 2 1 7 7 C 1.37877 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99689 * 175.14300 * 7 2 1 9 9 C 1.50696 * 119.99957 * 355.42608 * 7 2 1 10 10 C 1.53003 * 115.54453 * 274.92366 * 9 7 2 11 11 N 1.46895 * 109.47038 * 296.30160 * 10 9 7 12 12 C 1.46910 * 110.99971 * 174.87619 * 11 10 9 13 13 C 1.53004 * 109.47185 * 180.02562 * 12 11 10 14 14 H 1.09006 * 109.46983 * 59.99845 * 13 12 11 15 15 O 1.42898 * 109.47163 * 300.00457 * 13 12 11 16 16 C 1.50698 * 109.47025 * 180.02562 * 13 12 11 17 17 C 1.38246 * 119.98474 * 84.72695 * 16 13 12 18 18 C 1.38215 * 120.00900 * 179.72484 * 17 16 13 19 19 C 1.38345 * 119.98618 * 0.54696 * 18 17 16 20 20 Cl 1.73604 * 120.01268 * 179.74789 * 19 18 17 21 21 C 1.38353 * 119.97677 * 359.72572 * 19 18 17 22 22 C 1.38213 * 119.98733 * 0.02562 * 21 19 18 23 23 C 1.52992 * 117.50274 * 129.25327 * 9 7 2 24 24 C 1.52997 * 117.50316 * 60.59202 * 9 7 2 25 25 H 0.97010 * 119.99605 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47377 * 56.31067 * 10 9 7 27 27 H 1.09010 * 109.46900 * 176.30945 * 10 9 7 28 28 H 1.00901 * 111.00867 * 298.83269 * 11 10 9 29 29 H 1.08991 * 109.47043 * 300.00189 * 12 11 10 30 30 H 1.09002 * 109.46570 * 60.00438 * 12 11 10 31 31 H 0.96710 * 114.00081 * 299.99833 * 15 13 12 32 32 H 1.07998 * 119.99275 * 359.97438 * 17 16 13 33 33 H 1.07998 * 120.00304 * 180.27211 * 18 17 16 34 34 H 1.07998 * 120.00866 * 179.97438 * 21 19 18 35 35 H 1.07996 * 119.99524 * 180.02562 * 22 21 19 36 36 H 1.08998 * 117.49867 * 359.97438 * 23 9 7 37 37 H 1.09002 * 117.49985 * 145.01605 * 23 9 7 38 38 H 1.09005 * 117.50012 * 214.98240 * 24 9 7 39 39 H 1.09000 * 117.49705 * 359.97308 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9526 1.5267 11 7 2.1624 -3.2129 2.2640 12 6 1.8832 -3.5357 3.6698 13 6 3.1996 -3.7993 4.4037 14 1 3.8283 -2.9102 4.3529 15 8 3.8766 -4.8970 3.7882 16 6 2.9132 -4.1309 5.8455 17 6 2.5991 -5.4278 6.2070 18 6 2.3419 -5.7336 7.5301 19 6 2.3877 -4.7395 8.4911 20 17 2.0583 -5.1216 10.1522 21 6 2.6966 -3.4407 8.1279 22 6 2.9586 -3.1370 6.8053 23 6 1.5729 -3.5802 -0.9272 24 6 0.2452 -2.8218 -0.9977 25 1 -0.4850 0.8402 -0.0004 26 1 0.3521 -2.1721 2.0341 27 1 0.3236 -3.8649 1.4847 28 1 2.6970 -3.9468 1.8239 29 1 1.3673 -2.6982 4.1392 30 1 1.2543 -4.4245 3.7204 31 1 3.3746 -5.7235 3.7970 32 1 2.5586 -6.2028 5.4559 33 1 2.1008 -6.7476 7.8129 34 1 2.7321 -2.6641 8.8776 35 1 3.2002 -2.1233 6.5217 36 1 2.3244 -3.3504 -1.6825 37 1 1.5428 -4.6176 -0.5939 38 1 -0.6579 -3.3605 -0.7108 39 1 0.1232 -2.0928 -1.7989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819280310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:09 Heat of formation + Delta-G solvation = -28.836591 kcal Electronic energy + Delta-G solvation = -20793.686993 eV Core-core repulsion = 17533.700603 eV Total energy + Delta-G solvation = -3259.986390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.79905 -38.96546 -38.18393 -37.23829 -35.29196 -33.86005 -32.52495 -31.99639 -29.19377 -27.52189 -25.77755 -23.91193 -23.59065 -22.75455 -22.04572 -20.86350 -18.73247 -18.16189 -17.33963 -17.16690 -16.69895 -16.37438 -15.96602 -15.52063 -15.25522 -15.20430 -14.78638 -14.53630 -14.41920 -14.26211 -13.67164 -13.26082 -13.16709 -12.94908 -12.79911 -12.65820 -12.54829 -12.47655 -12.30606 -11.98732 -11.95982 -11.77361 -11.39101 -10.98599 -10.85873 -10.30818 -10.04609 -9.89545 -9.59711 -9.04969 -8.01550 -6.08292 0.06442 0.28981 1.11831 1.42250 1.45519 1.56403 2.49410 2.54794 3.18262 3.28162 3.49872 3.61307 3.77187 3.90990 3.94427 4.11362 4.18312 4.32869 4.39131 4.45697 4.55760 4.65608 4.72075 4.73018 4.84678 4.91628 5.00687 5.02518 5.08665 5.17980 5.21183 5.32664 5.52465 5.69974 5.73581 5.76591 5.89569 6.34088 6.52938 6.73533 6.81470 6.95541 7.57015 9.06795 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.020831 B = 0.003113 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.809725 B = 8993.493563 C = 9654.962809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.020 3.980 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.478 4.478 8 H 0.046 0.954 9 C 0.023 3.977 10 C 0.124 3.876 11 N -0.677 5.677 12 C 0.040 3.960 13 C 0.162 3.838 14 H 0.104 0.896 15 O -0.559 6.559 16 C -0.113 4.113 17 C -0.101 4.101 18 C -0.111 4.111 19 C -0.047 4.047 20 Cl -0.072 7.072 21 C -0.114 4.114 22 C -0.105 4.105 23 C -0.189 4.189 24 C -0.161 4.161 25 H 0.255 0.745 26 H 0.038 0.962 27 H 0.010 0.990 28 H 0.344 0.656 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.384 0.616 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.963 -12.443 16.957 21.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.772 3.228 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.516 4.516 8 H 0.064 0.936 9 C 0.022 3.978 10 C -0.005 4.005 11 N -0.308 5.308 12 C -0.089 4.089 13 C 0.103 3.897 14 H 0.122 0.878 15 O -0.366 6.366 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.129 4.129 19 C -0.073 4.073 20 Cl -0.044 7.044 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.226 4.226 24 C -0.200 4.200 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.028 0.972 28 H 0.162 0.838 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.233 0.767 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.164 0.836 35 H 0.159 0.841 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.364 -11.243 17.143 20.960 hybrid contribution -0.783 -0.008 0.031 0.784 sum 3.581 -11.251 17.174 20.841 Atomic orbital electron populations 1.70130 1.06819 1.26438 1.51864 1.25573 0.95509 1.01556 0.95180 0.85715 0.79280 0.80663 0.77185 1.19477 1.21185 1.20952 1.20576 0.92219 0.90174 1.48631 0.93568 1.18950 0.98295 0.93235 0.87316 1.21176 0.89454 0.95745 0.94143 1.60034 1.20498 1.48960 1.01352 1.22565 0.96499 0.99864 0.90017 1.20673 0.92859 0.90194 0.85985 0.87781 1.86663 1.47468 1.21379 1.81116 1.20693 0.99680 0.94804 0.96244 1.21105 0.98224 0.96285 0.96270 1.21246 1.00030 0.99745 0.91917 1.21131 1.04801 0.95491 0.85923 1.98370 1.93874 1.94564 1.17543 1.21233 0.99624 0.95360 0.97019 1.21197 0.98987 1.00170 0.91974 1.22976 0.98736 0.96346 1.04553 1.22392 0.91942 1.01881 1.03740 0.93588 0.94348 0.97197 0.83750 0.91615 0.94416 0.76669 0.83025 0.83078 0.83583 0.84070 0.90885 0.89159 0.91149 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.48 12.65 21.45 0.27 -52.21 16 2 C 0.02 1.13 5.43 84.65 0.46 1.59 16 3 Si 0.94 44.37 29.54 68.60 2.03 46.40 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 7 C -0.48 -26.17 8.71 25.60 0.22 -25.95 16 8 H 0.05 2.59 7.82 -2.91 -0.02 2.57 16 9 C 0.02 1.09 1.64 -52.93 -0.09 1.01 16 10 C 0.12 5.31 5.51 86.31 0.48 5.79 16 11 N -0.68 -24.72 6.35 -513.86 -3.26 -27.99 16 12 C 0.04 1.14 5.37 86.30 0.46 1.61 16 13 C 0.16 3.88 3.48 29.85 0.10 3.99 16 14 H 0.10 2.81 8.05 -2.38 -0.02 2.80 16 15 O -0.56 -12.77 12.47 -148.98 -1.86 -14.62 16 16 C -0.11 -2.30 5.00 -19.86 -0.10 -2.40 16 17 C -0.10 -1.69 9.33 22.27 0.21 -1.48 16 18 C -0.11 -1.82 9.83 22.29 0.22 -1.60 16 19 C -0.05 -0.86 6.32 22.32 0.14 -0.71 16 20 Cl -0.07 -1.23 28.96 -2.72 -0.08 -1.31 16 21 C -0.11 -2.09 9.83 22.29 0.22 -1.87 16 22 C -0.11 -2.09 9.68 22.26 0.22 -1.87 16 23 C -0.19 -7.90 9.96 30.61 0.30 -7.59 16 24 C -0.16 -7.58 9.15 30.62 0.28 -7.30 16 25 H 0.26 14.09 8.31 -92.70 -0.77 13.32 16 26 H 0.04 1.87 8.13 -2.39 -0.02 1.85 16 27 H 0.01 0.39 8.10 -2.38 -0.02 0.37 16 28 H 0.34 11.81 8.18 -89.69 -0.73 11.08 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.38 5.71 7.39 -74.05 -0.55 5.16 16 32 H 0.15 1.75 6.62 -2.91 -0.02 1.73 16 33 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 36 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 39 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -62.60 346.16 0.01 -62.59 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -0.22 Total: 23.94 kcal Atomic # 6 Polarization: -39.93 SS G_CDS: 3.13 Total: -36.80 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -2.99 Total: -80.20 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -1.86 Total: -14.62 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -62.60 0.01 -62.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819280310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.757 kcal (2) G-P(sol) polarization free energy of solvation -62.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds