Wall clock time and date at job start Tue Mar 31 2020 06:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47247 * 2 1 4 4 C 1.46497 * 120.00453 * 270.00143 * 3 2 1 5 5 C 1.50696 * 109.47076 * 270.00189 * 4 3 2 6 6 H 1.07998 * 120.00168 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99873 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00159 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47094 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47431 * 120.00554 * 9 7 5 12 12 H 1.48499 * 109.47172 * 240.00593 * 9 7 5 13 13 C 1.34778 * 119.99540 * 90.00470 * 3 2 1 14 14 O 1.21603 * 119.99818 * 180.02562 * 13 3 2 15 15 C 1.47407 * 120.00200 * 359.97438 * 13 3 2 16 16 C 1.40065 * 120.17434 * 270.00415 * 15 13 3 17 17 C 1.39135 * 119.71264 * 180.02562 * 16 15 13 18 18 C 1.38534 * 119.97320 * 359.75378 * 17 16 15 19 19 C 1.38398 * 120.42796 * 0.02562 * 18 17 16 20 20 C 1.38100 * 120.32675 * 359.97438 * 19 18 17 21 21 F 1.35093 * 120.04786 * 179.97438 * 20 19 18 22 22 O 1.36595 * 108.59199 * 179.75527 * 17 16 15 23 23 C 1.43992 * 105.43918 * 17.26558 * 22 17 16 24 24 O 1.36221 * 131.53729 * 359.68685 * 16 15 13 25 25 H 1.09004 * 109.46512 * 299.99608 * 1 2 3 26 26 H 1.09000 * 109.47064 * 59.99103 * 1 2 3 27 27 H 1.08999 * 109.47040 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46512 * 240.00392 * 2 1 3 29 29 H 1.09001 * 109.47199 * 120.00363 * 2 1 3 30 30 H 1.09008 * 109.46657 * 30.00266 * 4 3 2 31 31 H 1.08995 * 109.47238 * 149.99679 * 4 3 2 32 32 H 0.96990 * 120.00156 * 179.97438 * 8 7 5 33 33 H 1.07997 * 119.78576 * 179.97438 * 18 17 16 34 34 H 1.07995 * 119.83581 * 180.02562 * 19 18 17 35 35 H 1.09005 * 110.58087 * 91.47382 * 23 22 17 36 36 H 1.09000 * 110.58209 * 214.21986 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2309 -1.0958 7 6 4.1491 2.3898 -2.8779 8 7 3.3491 3.1260 -3.6180 9 14 5.9134 2.0969 -3.4169 10 1 6.6011 1.2416 -2.4165 11 1 5.9214 1.4175 -4.7373 12 1 6.6204 3.3983 -3.5255 13 6 2.2431 2.0164 1.1673 14 8 2.6480 3.1631 1.1673 15 6 1.9970 1.3217 2.4438 16 6 0.7379 1.3939 3.0533 17 6 0.5163 0.7348 4.2584 18 6 1.5375 0.0071 4.8473 19 6 2.7811 -0.0696 4.2448 20 6 3.0176 0.5787 3.0486 21 9 4.2338 0.5005 2.4657 22 8 -0.7737 0.9598 4.6471 23 6 -1.4546 1.4230 3.4659 24 8 -0.4084 2.0314 2.6857 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 1.5817 1.6878 -2.0283 31 1 2.0956 3.1411 -1.1383 32 1 3.6751 3.5165 -4.4438 33 1 1.3623 -0.5029 5.7830 34 1 3.5703 -0.6399 4.7121 35 1 -1.8980 0.5861 2.9262 36 1 -2.2174 2.1568 3.7262 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930465026.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:44 Heat of formation + Delta-G solvation = -105.388894 kcal Electronic energy + Delta-G solvation = -24513.455478 eV Core-core repulsion = 20685.980061 eV Total energy + Delta-G solvation = -3827.475417 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.88599 -42.41534 -39.21901 -37.37997 -36.44001 -35.31940 -32.81041 -31.10693 -30.13163 -29.84906 -27.16753 -26.02186 -24.35522 -23.21091 -22.96490 -22.29918 -19.34315 -18.67254 -17.95085 -17.58663 -17.12535 -16.37458 -16.13737 -15.80639 -15.47859 -15.28622 -15.00507 -14.44510 -14.30935 -14.09806 -13.50536 -13.43624 -13.21620 -13.07236 -12.77916 -12.70959 -12.21722 -12.06053 -11.79104 -11.59595 -11.22831 -10.93967 -10.85803 -10.74784 -10.55845 -10.12533 -9.61840 -9.25596 -8.90314 -8.41845 -8.22898 -7.72319 -6.02894 -4.07311 0.74053 0.80573 2.44778 3.10084 3.14827 3.17945 3.32142 3.39833 3.45015 3.72678 4.17267 4.29978 4.45283 4.47388 4.67674 4.71110 4.83863 4.96113 5.13113 5.31761 5.33079 5.56584 5.62450 5.68003 5.77620 5.80272 5.85002 6.00755 6.20548 6.22006 6.47038 6.82809 7.02266 7.42118 7.50291 7.93520 8.23480 8.31058 8.83979 9.01236 9.57596 11.05457 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.022340 B = 0.005151 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.043234 B = 5434.173901 C = 6069.780567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.581 5.581 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.060 0.940 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.555 3.445 14 O -0.522 6.522 15 C -0.126 4.126 16 C 0.095 3.905 17 C 0.017 3.983 18 C -0.065 4.065 19 C -0.147 4.147 20 C 0.142 3.858 21 F -0.115 7.115 22 O -0.305 6.305 23 C 0.210 3.790 24 O -0.291 6.291 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.088 0.912 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.102 -10.315 15.942 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.312 5.312 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.339 3.661 14 O -0.398 6.398 15 C -0.132 4.132 16 C 0.049 3.951 17 C -0.028 4.028 18 C -0.084 4.084 19 C -0.166 4.166 20 C 0.121 3.879 21 F -0.093 7.093 22 O -0.221 6.221 23 C 0.099 3.901 24 O -0.206 6.206 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.165 0.835 34 H 0.173 0.827 35 H 0.106 0.894 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.018 -9.432 15.739 20.446 hybrid contribution 0.872 -0.101 -0.545 1.033 sum -8.146 -9.534 15.194 19.701 Atomic orbital electron populations 1.22251 0.96704 1.01327 1.02537 1.21411 0.93643 0.83998 1.02636 1.48218 1.62459 1.13266 1.07244 1.19360 0.96604 0.93692 0.77608 1.21475 0.96760 1.31952 1.06262 0.92198 1.24931 0.97930 0.94866 0.96341 1.69944 1.35636 1.33485 1.14352 0.86429 0.84577 0.78102 0.78277 1.19685 1.20970 1.20849 1.17600 0.79320 0.86302 0.82849 1.90807 1.45271 1.17138 1.86606 1.19127 0.91257 1.03379 0.99394 1.19182 0.88303 0.94094 0.93512 1.19644 0.87158 1.01708 0.94278 1.19851 0.89658 0.97877 1.00987 1.20793 0.97925 1.03092 0.94743 1.17110 0.80512 0.97834 0.92425 1.91612 1.39721 1.94282 1.83663 1.87388 1.18582 1.82760 1.33390 1.25741 0.89481 0.96828 0.78059 1.87457 1.14677 1.56210 1.62262 0.93106 0.91779 0.92164 0.89470 0.92197 0.94611 0.93722 0.92768 0.83460 0.82709 0.89425 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 10.24 37.16 0.38 -2.06 16 2 C 0.11 1.86 5.95 -4.04 -0.02 1.84 16 3 N -0.58 -13.10 2.46 -176.34 -0.43 -13.54 16 4 C 0.25 6.62 5.16 -5.20 -0.03 6.59 16 5 C -0.53 -15.25 9.39 -34.44 -0.32 -15.57 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 C 0.56 12.82 6.73 -12.53 -0.08 12.74 16 14 O -0.52 -14.42 16.69 5.28 0.09 -14.34 16 15 C -0.13 -2.28 3.94 -104.83 -0.41 -2.70 16 16 C 0.10 1.48 5.93 -38.56 -0.23 1.26 16 17 C 0.02 0.21 7.14 -39.14 -0.28 -0.07 16 18 C -0.06 -0.65 10.04 -39.41 -0.40 -1.05 16 19 C -0.15 -1.61 10.00 -39.57 -0.40 -2.00 16 20 C 0.14 2.21 6.82 -38.98 -0.27 1.95 16 21 F -0.11 -2.04 16.83 2.25 0.04 -2.01 16 22 O -0.30 -3.46 11.41 -46.00 -0.52 -3.98 16 23 C 0.21 2.04 8.89 101.05 0.90 2.94 16 24 O -0.29 -4.36 10.21 -44.79 -0.46 -4.82 16 25 H 0.05 0.72 5.79 -51.93 -0.30 0.42 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.52 8.07 -51.93 -0.42 1.10 16 29 H 0.06 0.93 6.52 -51.93 -0.34 0.60 16 30 H 0.04 0.96 8.07 -51.92 -0.42 0.54 16 31 H 0.04 1.35 7.42 -51.93 -0.39 0.97 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 318.10 15.07 4.79 4.79 Total: -1.00 -35.70 318.10 -5.98 -41.68 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -3.94 Total: -4.39 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -1.26 Total: 5.54 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.30 Total: -39.70 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.89 Total: -23.14 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.70 -5.98 -41.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930465026.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.704 kcal (2) G-P(sol) polarization free energy of solvation -35.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds