Wall clock time and date at job start Tue Mar 31 2020 06:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00236 * 2 1 4 4 H 1.48503 * 109.46807 * 180.27612 * 3 2 1 5 5 H 1.48496 * 109.47397 * 300.27862 * 3 2 1 6 6 H 1.48500 * 109.47032 * 60.27936 * 3 2 1 7 7 C 1.38816 * 119.99378 * 180.27826 * 2 1 3 8 8 H 1.08005 * 119.99829 * 179.71971 * 7 2 1 9 9 N 1.36936 * 120.00158 * 359.72778 * 7 2 1 10 10 C 1.46500 * 119.99952 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47153 * 174.90980 * 10 9 7 12 12 N 1.46504 * 110.01486 * 54.45754 * 11 10 9 13 13 C 1.34779 * 119.99968 * 65.19347 * 12 11 10 14 14 O 1.21681 * 120.00369 * 354.91187 * 13 12 11 15 15 C 1.46686 * 119.99653 * 174.91267 * 13 12 11 16 16 C 1.35664 * 126.13027 * 180.02562 * 15 13 12 17 17 N 1.30937 * 114.19357 * 179.97438 * 16 15 13 18 18 C 1.29435 * 117.36262 * 359.97438 * 17 16 15 19 19 S 1.70951 * 110.38939 * 359.73083 * 18 17 16 20 20 C 1.54266 * 110.03268 * 293.06608 * 11 10 9 21 21 C 1.54971 * 104.15743 * 217.13262 * 20 11 10 22 22 C 1.54890 * 102.77767 * 37.89138 * 21 20 11 23 23 C 1.53874 * 110.03364 * 175.84728 * 11 10 9 24 24 H 0.97008 * 119.99383 * 359.72105 * 1 2 3 25 25 H 0.97003 * 120.00177 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.46714 * 294.90891 * 10 9 7 27 27 H 1.09004 * 109.47138 * 54.90936 * 10 9 7 28 28 H 0.97000 * 119.99652 * 245.18936 * 12 11 10 29 29 H 1.08008 * 122.90098 * 359.97438 * 16 15 13 30 30 H 1.07994 * 124.80027 * 180.02562 * 18 17 16 31 31 H 1.08996 * 110.48617 * 335.78112 * 20 11 10 32 32 H 1.09004 * 110.48273 * 98.42456 * 20 11 10 33 33 H 1.08994 * 110.72506 * 279.57227 * 21 20 11 34 34 H 1.09007 * 110.75871 * 156.22218 * 21 20 11 35 35 H 1.08997 * 110.48458 * 203.40743 * 22 21 20 36 36 H 1.08999 * 110.48442 * 80.75525 * 22 21 20 37 37 H 1.09002 * 110.03439 * 238.57113 * 23 11 10 38 38 H 1.08998 * 110.03138 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0067 5 1 1.8865 2.3994 -1.2090 6 1 1.8967 2.3934 1.2159 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2023 -0.0104 9 7 1.3254 -2.3881 -0.0060 10 6 2.0578 -3.6569 -0.0116 11 6 1.0689 -4.8172 0.1175 12 7 0.0474 -4.7241 -0.9286 13 6 0.3946 -4.8614 -2.2236 14 8 1.5669 -4.9700 -2.5311 15 6 -0.6409 -4.8799 -3.2624 16 6 -0.4332 -5.0114 -4.5966 17 7 -1.5284 -4.9982 -5.3141 18 6 -2.6510 -4.8653 -4.6836 19 16 -2.3781 -4.7447 -3.0003 20 6 0.4039 -4.7924 1.5092 21 6 0.2665 -6.2882 1.8903 22 6 1.5764 -6.9039 1.3388 23 6 1.8138 -6.1592 0.0089 24 1 -0.4849 0.8402 0.0041 25 1 0.3554 -2.3881 -0.0016 26 1 2.6108 -3.7530 -0.9460 27 1 2.7543 -3.6781 0.8267 28 1 -0.8788 -4.5637 -0.6890 29 1 0.5506 -5.1179 -5.0295 30 1 -3.6227 -4.8394 -5.1541 31 1 1.0394 -4.2730 2.2265 32 1 -0.5770 -4.3201 1.4549 33 1 -0.6029 -6.7316 1.4051 34 1 0.2092 -6.4076 2.9723 35 1 1.4505 -7.9719 1.1608 36 1 2.4016 -6.7257 2.0284 37 1 1.4148 -6.7416 -0.8216 38 1 2.8799 -5.9839 -0.1353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753500708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:20 Heat of formation + Delta-G solvation = 19.807115 kcal Electronic energy + Delta-G solvation = -21996.580495 eV Core-core repulsion = 18773.039912 eV Total energy + Delta-G solvation = -3223.540584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.31169 -39.44698 -37.41768 -34.31012 -33.26225 -31.24563 -30.38532 -28.64783 -28.04259 -25.95034 -24.48093 -22.35005 -22.07669 -20.70479 -19.85700 -19.20308 -18.57475 -17.08589 -16.68169 -15.97058 -15.23001 -15.09225 -14.84589 -14.44590 -14.05348 -13.99872 -13.87639 -13.55486 -13.18473 -12.97497 -12.70621 -11.94961 -11.65413 -11.58511 -11.17278 -10.98186 -10.91941 -10.83154 -10.70120 -10.50532 -10.43063 -10.00897 -9.97910 -9.69005 -9.58665 -9.53341 -9.09624 -8.80773 -8.63812 -6.84029 -5.73244 -2.99407 0.26812 1.17204 1.55290 2.53277 3.30774 3.45262 3.46533 3.51818 3.53700 4.22075 4.58454 4.68800 4.81748 4.98426 5.05564 5.11561 5.32584 5.51767 5.58219 5.64136 5.65545 5.77195 5.86697 5.94833 6.01121 6.04397 6.18474 6.27204 6.35469 6.47823 6.50846 6.57163 6.88523 7.07968 7.50587 7.74166 7.77001 8.43953 8.46268 9.57850 10.15762 10.51580 11.50054 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.011011 B = 0.006282 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.296608 B = 4455.849627 C = 6081.700045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.230 4.230 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.145 3.855 11 C 0.169 3.831 12 N -0.703 5.703 13 C 0.600 3.400 14 O -0.516 6.516 15 C -0.272 4.272 16 C 0.105 3.895 17 N -0.476 5.476 18 C 0.021 3.979 19 S 0.171 5.829 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.117 4.117 24 H 0.252 0.748 25 H 0.381 0.619 26 H 0.038 0.962 27 H 0.028 0.972 28 H 0.394 0.606 29 H 0.187 0.813 30 H 0.203 0.797 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.620 -15.453 -1.544 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.361 4.361 8 H 0.087 0.913 9 N -0.370 5.370 10 C 0.016 3.984 11 C 0.084 3.916 12 N -0.353 5.353 13 C 0.384 3.616 14 O -0.394 6.394 15 C -0.397 4.397 16 C -0.052 4.052 17 N -0.189 5.189 18 C -0.274 4.274 19 S 0.424 5.576 20 C -0.155 4.155 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.156 4.156 24 H 0.062 0.938 25 H 0.214 0.786 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.229 0.771 29 H 0.204 0.796 30 H 0.220 0.780 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.341 -15.363 -1.477 16.686 hybrid contribution 0.353 1.198 -0.425 1.320 sum -5.988 -14.165 -1.902 15.496 Atomic orbital electron populations 1.69661 1.05018 1.25277 1.58563 1.24685 0.95531 0.97511 1.03449 0.86132 0.78860 0.84276 0.77073 1.20613 1.22018 1.21977 1.19286 0.91063 0.84180 1.41609 0.91267 1.42207 1.05617 0.99749 1.89449 1.21177 0.92998 0.84988 0.99209 1.21327 0.88376 0.95771 0.86134 1.45950 1.11315 1.72889 1.05193 1.16550 0.86830 0.76731 0.81463 1.90815 1.17410 1.49552 1.81590 1.25992 0.97005 1.17152 0.99525 1.22206 0.98332 0.96616 0.88026 1.66238 0.97753 1.16273 1.38682 1.28737 1.01543 1.02576 0.94523 1.83977 1.00155 1.63893 1.09550 1.22613 1.01498 0.96166 0.95270 1.22555 0.97633 0.95720 1.00401 1.22385 0.97796 0.99025 0.96968 1.22421 1.01247 0.94649 0.97309 0.93782 0.78554 0.94385 0.95389 0.77138 0.79576 0.78038 0.89385 0.90979 0.91836 0.91534 0.91996 0.91474 0.91491 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.17 13.06 55.49 0.72 -27.44 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 0.90 22.92 29.55 -169.99 -5.02 17.89 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 7 C -0.23 -6.57 9.99 -15.06 -0.15 -6.72 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.73 -18.43 5.28 -59.90 -0.32 -18.74 16 10 C 0.14 3.06 4.63 -4.04 -0.02 3.04 16 11 C 0.17 2.78 0.57 -130.70 -0.07 2.71 16 12 N -0.70 -11.31 4.46 -47.86 -0.21 -11.53 16 13 C 0.60 10.52 6.83 -12.85 -0.09 10.43 16 14 O -0.52 -10.51 14.14 5.21 0.07 -10.43 16 15 C -0.27 -4.11 6.48 -37.09 -0.24 -4.35 16 16 C 0.11 1.54 11.09 -18.85 -0.21 1.33 16 17 N -0.48 -6.49 10.51 -15.38 -0.16 -6.65 16 18 C 0.02 0.22 12.22 51.75 0.63 0.86 16 19 S 0.17 1.93 22.36 -107.50 -2.40 -0.48 16 20 C -0.12 -1.69 5.78 -25.03 -0.14 -1.84 16 21 C -0.13 -1.42 6.91 -24.69 -0.17 -1.59 16 22 C -0.12 -1.43 6.83 -25.07 -0.17 -1.60 16 23 C -0.12 -1.70 5.22 -25.61 -0.13 -1.83 16 24 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.38 9.92 7.18 -40.82 -0.29 9.63 16 26 H 0.04 0.90 6.58 -51.93 -0.34 0.56 16 27 H 0.03 0.59 8.03 -51.93 -0.42 0.18 16 28 H 0.39 5.67 7.42 -40.82 -0.30 5.36 16 29 H 0.19 2.61 8.06 -52.48 -0.42 2.19 16 30 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.09 1.38 7.77 -51.93 -0.40 0.98 16 32 H 0.07 1.04 7.70 -51.93 -0.40 0.64 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.00 6.99 -51.93 -0.36 0.64 16 38 H 0.07 1.14 7.67 -51.93 -0.40 0.74 16 LS Contribution 326.91 15.07 4.93 4.93 Total: -1.00 -33.51 326.91 -8.26 -41.77 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -5.00 Total: 10.81 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -0.86 Total: -0.12 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: 0.03 Total: -64.36 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.40 Total: -0.48 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.51 -8.26 -41.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753500708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.576 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds