Wall clock time and date at job start Tue Mar 31 2020 06:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00236 * 2 1 4 4 H 1.48503 * 109.46807 * 180.27612 * 3 2 1 5 5 H 1.48496 * 109.47397 * 300.27862 * 3 2 1 6 6 H 1.48500 * 109.47032 * 60.27936 * 3 2 1 7 7 C 1.38816 * 119.99378 * 180.27826 * 2 1 3 8 8 H 1.08005 * 119.99829 * 179.71971 * 7 2 1 9 9 N 1.36936 * 120.00158 * 359.72778 * 7 2 1 10 10 C 1.46500 * 119.99952 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47153 * 174.90980 * 10 9 7 12 12 N 1.46504 * 110.01486 * 54.45754 * 11 10 9 13 13 C 1.34779 * 119.99968 * 65.19347 * 12 11 10 14 14 O 1.21681 * 120.00369 * 354.91187 * 13 12 11 15 15 C 1.46686 * 119.99653 * 174.91267 * 13 12 11 16 16 C 1.35664 * 126.13027 * 180.02562 * 15 13 12 17 17 N 1.30937 * 114.19357 * 179.97438 * 16 15 13 18 18 C 1.29435 * 117.36262 * 359.97438 * 17 16 15 19 19 S 1.70951 * 110.38939 * 359.73083 * 18 17 16 20 20 C 1.54266 * 110.03268 * 293.06608 * 11 10 9 21 21 C 1.54971 * 104.15743 * 217.13262 * 20 11 10 22 22 C 1.54890 * 102.77767 * 37.89138 * 21 20 11 23 23 C 1.53874 * 110.03364 * 175.84728 * 11 10 9 24 24 H 0.97008 * 119.99383 * 359.72105 * 1 2 3 25 25 H 0.97003 * 120.00177 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.46714 * 294.90891 * 10 9 7 27 27 H 1.09004 * 109.47138 * 54.90936 * 10 9 7 28 28 H 0.97000 * 119.99652 * 245.18936 * 12 11 10 29 29 H 1.08008 * 122.90098 * 359.97438 * 16 15 13 30 30 H 1.07994 * 124.80027 * 180.02562 * 18 17 16 31 31 H 1.08996 * 110.48617 * 335.78112 * 20 11 10 32 32 H 1.09004 * 110.48273 * 98.42456 * 20 11 10 33 33 H 1.08994 * 110.72506 * 279.57227 * 21 20 11 34 34 H 1.09007 * 110.75871 * 156.22218 * 21 20 11 35 35 H 1.08997 * 110.48458 * 203.40743 * 22 21 20 36 36 H 1.08999 * 110.48442 * 80.75525 * 22 21 20 37 37 H 1.09002 * 110.03439 * 238.57113 * 23 11 10 38 38 H 1.08998 * 110.03138 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0067 5 1 1.8865 2.3994 -1.2090 6 1 1.8967 2.3934 1.2159 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2023 -0.0104 9 7 1.3254 -2.3881 -0.0060 10 6 2.0578 -3.6569 -0.0116 11 6 1.0689 -4.8172 0.1175 12 7 0.0474 -4.7241 -0.9286 13 6 0.3946 -4.8614 -2.2236 14 8 1.5669 -4.9700 -2.5311 15 6 -0.6409 -4.8799 -3.2624 16 6 -0.4332 -5.0114 -4.5966 17 7 -1.5284 -4.9982 -5.3141 18 6 -2.6510 -4.8653 -4.6836 19 16 -2.3781 -4.7447 -3.0003 20 6 0.4039 -4.7924 1.5092 21 6 0.2665 -6.2882 1.8903 22 6 1.5764 -6.9039 1.3388 23 6 1.8138 -6.1592 0.0089 24 1 -0.4849 0.8402 0.0041 25 1 0.3554 -2.3881 -0.0016 26 1 2.6108 -3.7530 -0.9460 27 1 2.7543 -3.6781 0.8267 28 1 -0.8788 -4.5637 -0.6890 29 1 0.5506 -5.1179 -5.0295 30 1 -3.6227 -4.8394 -5.1541 31 1 1.0394 -4.2730 2.2265 32 1 -0.5770 -4.3201 1.4549 33 1 -0.6029 -6.7316 1.4051 34 1 0.2092 -6.4076 2.9723 35 1 1.4505 -7.9719 1.1608 36 1 2.4016 -6.7257 2.0284 37 1 1.4148 -6.7416 -0.8216 38 1 2.8799 -5.9839 -0.1353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753500708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:20 Heat of formation + Delta-G solvation = -4.071829 kcal Electronic energy + Delta-G solvation = -21997.615964 eV Core-core repulsion = 18773.039912 eV Total energy + Delta-G solvation = -3224.576052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.58763 -40.54196 -38.70827 -36.18591 -34.65634 -33.10417 -31.66258 -29.79973 -29.50501 -27.07008 -26.23829 -24.08090 -23.35544 -21.77497 -20.93196 -20.52919 -19.75586 -19.15335 -17.81901 -17.32816 -16.60596 -16.35526 -16.27767 -15.92984 -15.48326 -15.07424 -15.02050 -14.97355 -14.81364 -14.54093 -14.07961 -13.59416 -13.23151 -12.85659 -12.74591 -12.61511 -12.27035 -12.16933 -12.00305 -11.91891 -11.80320 -11.74633 -11.40146 -11.24460 -10.93245 -10.71640 -10.60175 -10.11001 -9.99603 -8.96637 -7.96483 -5.22732 -0.76148 0.19062 0.57472 1.43542 1.43739 1.44819 1.54480 2.03525 2.19594 2.53997 3.30467 3.36213 3.48365 3.69627 3.79841 3.92870 4.15413 4.16866 4.33064 4.39452 4.51037 4.55914 4.67652 4.79290 4.84300 4.91521 4.99200 5.08960 5.09710 5.19150 5.25308 5.33763 5.46414 5.49865 5.63888 6.26138 6.41067 6.55982 7.12779 7.33657 8.07351 8.35888 9.26652 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.011011 B = 0.006282 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.296608 B = 4455.849627 C = 6081.700045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.244 4.244 8 H 0.065 0.935 9 N -0.730 5.730 10 C 0.146 3.854 11 C 0.171 3.829 12 N -0.697 5.697 13 C 0.595 3.405 14 O -0.557 6.557 15 C -0.315 4.315 16 C 0.105 3.895 17 N -0.502 5.502 18 C 0.039 3.961 19 S 0.221 5.779 20 C -0.116 4.116 21 C -0.113 4.113 22 C -0.117 4.117 23 C -0.112 4.112 24 H 0.251 0.749 25 H 0.376 0.624 26 H 0.009 0.991 27 H 0.028 0.972 28 H 0.403 0.597 29 H 0.180 0.820 30 H 0.248 0.752 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.325 -16.262 -0.970 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.262 4.262 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.214 1.214 7 C -0.376 4.376 8 H 0.083 0.917 9 N -0.373 5.373 10 C 0.019 3.981 11 C 0.085 3.915 12 N -0.348 5.348 13 C 0.381 3.619 14 O -0.438 6.438 15 C -0.439 4.439 16 C -0.053 4.053 17 N -0.215 5.215 18 C -0.254 4.254 19 S 0.475 5.525 20 C -0.154 4.154 21 C -0.150 4.150 22 C -0.154 4.154 23 C -0.151 4.151 24 H 0.060 0.940 25 H 0.209 0.791 26 H 0.027 0.973 27 H 0.046 0.954 28 H 0.239 0.761 29 H 0.196 0.804 30 H 0.264 0.736 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.062 -16.195 -0.877 18.112 hybrid contribution 0.834 1.452 -0.666 1.802 sum -7.228 -14.743 -1.544 16.492 Atomic orbital electron populations 1.69785 1.06136 1.25831 1.59496 1.25427 0.96478 1.00511 1.03761 0.85150 0.78058 0.80226 0.76798 1.19785 1.22250 1.21405 1.19584 0.91178 0.85651 1.41168 0.91747 1.42269 1.05450 1.00374 1.89169 1.21222 0.94001 0.85407 0.97506 1.21296 0.87966 0.94661 0.87552 1.45906 1.11643 1.72357 1.04870 1.16938 0.86961 0.75873 0.82157 1.90779 1.19252 1.51459 1.82270 1.25827 0.99143 1.19930 0.99039 1.22243 0.98842 0.96070 0.88172 1.66303 0.98159 1.18115 1.38969 1.29567 1.02382 0.99010 0.94490 1.83751 0.96421 1.62796 1.09497 1.22576 1.00697 0.98765 0.93328 1.22522 0.97926 0.92725 1.01840 1.22378 0.98253 0.99819 0.94960 1.22352 0.99879 0.93744 0.99170 0.93994 0.79092 0.97301 0.95366 0.76139 0.80352 0.73581 0.90864 0.91083 0.90392 0.89432 0.89810 0.90852 0.92051 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.24 13.06 21.65 0.28 -57.96 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.97 47.40 29.55 68.60 2.03 49.43 16 4 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.24 -14.18 9.99 84.03 0.84 -13.34 16 8 H 0.06 3.73 7.83 -2.91 -0.02 3.70 16 9 N -0.73 -38.02 5.28 -343.44 -1.81 -39.83 16 10 C 0.15 6.44 4.63 86.38 0.40 6.84 16 11 C 0.17 5.69 0.57 4.33 0.00 5.69 16 12 N -0.70 -22.72 4.46 -423.55 -1.89 -24.61 16 13 C 0.59 21.55 6.83 86.45 0.59 22.14 16 14 O -0.56 -23.99 14.14 -4.29 -0.06 -24.05 16 15 C -0.31 -9.57 6.48 23.88 0.15 -9.41 16 16 C 0.10 3.13 11.09 84.23 0.93 4.06 16 17 N -0.50 -13.06 10.51 -202.56 -2.13 -15.19 16 18 C 0.04 0.73 12.22 130.60 1.60 2.33 16 19 S 0.22 4.56 22.36 -56.49 -1.26 3.30 16 20 C -0.12 -3.24 5.78 31.70 0.18 -3.05 16 21 C -0.11 -2.24 6.91 31.91 0.22 -2.02 16 22 C -0.12 -2.43 6.83 31.67 0.22 -2.22 16 23 C -0.11 -3.25 5.22 31.32 0.16 -3.09 16 24 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 25 H 0.38 20.02 7.18 -92.71 -0.67 19.36 16 26 H 0.01 0.46 6.58 -2.39 -0.02 0.44 16 27 H 0.03 1.24 8.03 -2.39 -0.02 1.22 16 28 H 0.40 11.44 7.42 -92.71 -0.69 10.75 16 29 H 0.18 5.34 8.06 -2.91 -0.02 5.32 16 30 H 0.25 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.07 2.27 7.77 -2.39 -0.02 2.25 16 32 H 0.07 1.99 7.70 -2.39 -0.02 1.97 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 1.84 6.99 -2.39 -0.02 1.83 16 38 H 0.06 1.87 7.67 -2.39 -0.02 1.85 16 Total: -1.00 -73.91 326.91 0.67 -73.24 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.26 Total: 31.31 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 5.77 Total: 4.36 kcal Atomic # 7 Polarization: -132.04 SS G_CDS: -5.55 Total: -137.59 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.06 Total: -24.05 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Atomic # 16 Polarization: 4.56 SS G_CDS: -1.26 Total: 3.30 kcal Total: -73.91 0.67 -73.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753500708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.172 kcal (2) G-P(sol) polarization free energy of solvation -73.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds