Wall clock time and date at job start Tue Mar 31 2020 06:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35762 * 116.99648 * 2 1 4 4 C 1.38605 * 119.94591 * 0.02610 * 3 2 1 5 5 C 1.38189 * 120.72729 * 179.73587 * 4 3 2 6 6 C 1.39377 * 120.40384 * 0.49920 * 5 4 3 7 7 C 1.47212 * 120.24760 * 179.75359 * 6 5 4 8 8 C 1.40123 * 120.92620 * 64.70260 * 7 6 5 9 9 C 1.38104 * 118.42445 * 180.02562 * 8 7 6 10 10 C 1.38969 * 120.35678 * 0.02562 * 9 8 7 11 11 N 1.31154 * 122.04603 * 359.73288 * 10 9 8 12 12 C 1.33886 * 121.59255 * 0.53452 * 11 10 9 13 13 C 1.40566 * 120.28127 * 179.75089 * 12 11 10 14 14 H 1.07996 * 120.00084 * 187.35610 * 13 12 11 15 15 C 1.40064 * 119.99621 * 7.36566 * 13 12 11 16 16 N 1.30742 * 120.00433 * 7.18890 * 15 13 12 17 17 Si 1.86806 * 119.99592 * 187.18850 * 15 13 12 18 18 H 1.48505 * 109.46957 * 265.01224 * 17 15 13 19 19 H 1.48497 * 109.47185 * 25.01317 * 17 15 13 20 20 H 1.48497 * 109.47041 * 145.01536 * 17 15 13 21 21 C 1.41639 * 119.51050 * 359.48686 * 6 5 4 22 22 C 1.41082 * 133.48197 * 180.27203 * 21 6 5 23 23 N 1.30356 * 108.70763 * 180.02562 * 22 21 6 24 24 N 1.40042 * 109.61968 * 359.97438 * 23 22 21 25 25 H 0.97003 * 125.99378 * 180.02562 * 24 23 22 26 26 C 1.37203 * 108.00353 * 0.02562 * 24 23 22 27 27 H 1.08996 * 109.46914 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46922 * 299.99772 * 1 2 3 29 29 H 1.08991 * 109.47188 * 60.00086 * 1 2 3 30 30 H 1.07995 * 119.63055 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.80254 * 180.28225 * 5 4 3 32 32 H 1.07990 * 120.78737 * 0.02562 * 8 7 6 33 33 H 1.08002 * 119.81992 * 179.97438 * 9 8 7 34 34 H 1.07999 * 118.97522 * 179.97438 * 10 9 8 35 35 H 0.97001 * 120.00176 * 180.02562 * 16 15 13 36 36 H 1.08006 * 125.64193 * 359.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2893 2.3714 0.0005 5 6 1.8997 3.6111 0.0060 6 6 3.2897 3.7130 0.0006 7 6 3.9364 5.0354 0.0010 8 6 3.7957 5.9055 1.0904 9 6 4.4243 7.1340 1.0359 10 6 5.1758 7.4897 -0.0777 11 7 5.3221 6.6863 -1.1040 12 6 4.7437 5.4793 -1.1379 13 6 4.9147 4.6425 -2.2544 14 1 4.3533 3.7232 -2.3312 15 6 5.8134 5.0011 -3.2671 16 7 6.5948 6.0376 -3.1109 17 14 5.8954 3.9983 -4.8411 18 1 6.9768 2.9868 -4.7277 19 1 4.5966 3.3122 -5.0591 20 1 6.1782 4.8988 -5.9875 21 6 4.0756 2.5346 0.0005 22 6 5.4659 2.2949 0.0008 23 7 5.6682 1.0072 -0.0001 24 7 4.4380 0.3379 -0.0003 25 1 4.3123 -0.6239 -0.0006 26 6 3.4420 1.2815 -0.0002 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 0.2113 2.3068 0.0006 31 1 1.2960 4.5066 0.0110 32 1 3.2097 5.6222 1.9520 33 1 4.3305 7.8224 1.8628 34 1 5.6574 8.4561 -0.0968 35 1 7.2169 6.2861 -3.8125 36 1 6.2353 3.0530 0.0008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236476953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:15 Heat of formation + Delta-G solvation = 66.298916 kcal Electronic energy + Delta-G solvation = -23044.150360 eV Core-core repulsion = 19687.181861 eV Total energy + Delta-G solvation = -3356.968499 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.106 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.42715 -39.97794 -39.71941 -37.18484 -35.54925 -33.56991 -32.33430 -31.79088 -30.74920 -29.41881 -28.15221 -27.17544 -24.28294 -23.57872 -23.00275 -22.62064 -21.67068 -19.35453 -19.32412 -18.19654 -17.40571 -17.04695 -16.72888 -16.43616 -16.12486 -15.93039 -15.70101 -15.42420 -15.07239 -14.49686 -14.29705 -13.93281 -13.73768 -13.27510 -13.17604 -12.96974 -12.87084 -12.75047 -12.60097 -12.10872 -12.07738 -11.98567 -11.90383 -11.49865 -11.22205 -10.86037 -10.05695 -9.59227 -9.42258 -9.35380 -8.47184 -8.18917 -6.43039 -0.09325 0.54897 0.91157 1.23723 1.36132 1.47051 1.52582 1.60023 1.82063 2.17891 2.36136 2.82102 2.87590 3.71645 3.78710 3.95170 4.04261 4.22382 4.28490 4.40226 4.44249 4.48918 4.50616 4.54475 4.80486 4.82778 4.86962 4.97088 5.01424 5.19990 5.28660 5.38044 5.61090 5.67099 5.76366 5.86493 6.02415 6.20460 6.26263 6.35028 6.52432 6.66784 6.72630 7.03112 8.21692 8.39669 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.006545 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.354413 B = 4277.118239 C = 5276.301752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.084 3.916 4 C -0.147 4.147 5 C -0.134 4.134 6 C 0.047 3.953 7 C -0.242 4.242 8 C -0.037 4.037 9 C -0.317 4.317 10 C 0.113 3.887 11 N -0.529 5.529 12 C 0.251 3.749 13 C -0.427 4.427 14 H 0.079 0.921 15 C 0.036 3.964 16 N -0.744 5.744 17 Si 0.964 3.036 18 H -0.265 1.265 19 H -0.262 1.262 20 H -0.262 1.262 21 C -0.147 4.147 22 C 0.087 3.913 23 N -0.272 5.272 24 N -0.496 5.496 25 H 0.450 0.550 26 C 0.097 3.903 27 H 0.120 0.880 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.167 0.833 31 H 0.135 0.865 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.282 0.718 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.375 -8.842 4.108 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.035 3.965 4 C -0.169 4.169 5 C -0.153 4.153 6 C 0.043 3.957 7 C -0.247 4.247 8 C -0.061 4.061 9 C -0.340 4.340 10 C -0.052 4.052 11 N -0.242 5.242 12 C 0.126 3.874 13 C -0.458 4.458 14 H 0.098 0.902 15 C -0.188 4.188 16 N -0.365 5.365 17 Si 0.785 3.215 18 H -0.190 1.190 19 H -0.186 1.186 20 H -0.186 1.186 21 C -0.155 4.155 22 C -0.107 4.107 23 N -0.089 5.089 24 N -0.214 5.214 25 H 0.297 0.703 26 C -0.020 4.020 27 H 0.138 0.862 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.185 0.815 31 H 0.153 0.847 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.150 0.850 35 H 0.093 0.907 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -8.698 -9.631 3.272 13.383 hybrid contribution -0.846 0.050 0.037 0.849 sum -9.544 -9.581 3.309 13.922 Atomic orbital electron populations 1.23346 0.76117 1.05544 1.02454 1.85919 1.23714 1.25809 1.89600 1.17872 0.87305 0.86046 1.05229 1.21150 1.00874 0.90084 1.04751 1.21018 0.92599 0.97873 1.03848 1.18171 0.92315 0.90003 0.95241 1.20474 1.10784 0.95538 0.97945 1.21198 0.96110 0.92865 0.95945 1.21344 1.10666 0.99904 1.02101 1.22835 0.94164 0.98089 0.90094 1.68652 1.24379 1.04830 1.26346 1.19954 0.87246 0.89150 0.91066 1.19545 1.19206 1.05107 1.01922 0.90245 1.26771 0.93906 0.95681 1.02436 1.70121 1.12904 1.20590 1.32884 0.85459 0.79677 0.78894 0.77487 1.19029 1.18582 1.18613 1.18843 0.93075 0.92482 1.11060 1.23701 0.95909 0.92930 0.98165 1.76667 1.04611 1.06993 1.20582 1.45881 1.00688 1.08283 1.66537 0.70284 1.18224 0.88974 0.89904 1.04911 0.86196 0.91381 0.91800 0.81543 0.84736 0.85926 0.85926 0.85013 0.90684 0.80473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.80 113.37 1.11 1.40 16 2 O -0.34 -8.43 10.49 -90.89 -0.95 -9.38 16 3 C 0.08 2.56 6.72 22.75 0.15 2.71 16 4 C -0.15 -4.13 9.00 22.35 0.20 -3.93 16 5 C -0.13 -4.55 9.72 22.53 0.22 -4.33 16 6 C 0.05 1.91 4.54 -19.81 -0.09 1.82 16 7 C -0.24 -11.17 5.39 -18.31 -0.10 -11.27 16 8 C -0.04 -1.57 9.90 22.70 0.22 -1.34 16 9 C -0.32 -13.27 10.05 22.41 0.23 -13.05 16 10 C 0.11 5.31 11.12 84.97 0.94 6.26 16 11 N -0.53 -28.61 8.00 -184.64 -1.48 -30.09 16 12 C 0.25 13.23 6.68 41.55 0.28 13.51 16 13 C -0.43 -22.46 8.13 23.28 0.19 -22.27 16 14 H 0.08 4.16 6.48 -2.91 -0.02 4.14 16 15 C 0.04 1.80 5.47 85.30 0.47 2.27 16 16 N -0.74 -39.13 11.58 21.84 0.25 -38.88 16 17 Si 0.96 38.91 29.57 68.60 2.03 40.94 16 18 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 20 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 21 C -0.15 -6.00 4.99 -21.21 -0.11 -6.10 16 22 C 0.09 3.64 11.39 85.61 0.98 4.62 16 23 N -0.27 -10.50 12.59 -56.46 -0.71 -11.21 16 24 N -0.50 -16.69 7.45 -51.34 -0.38 -17.07 16 25 H 0.45 11.99 8.96 -213.35 -1.91 10.08 16 26 C 0.10 3.49 7.26 39.22 0.28 3.77 16 27 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 0.85 7.65 -2.39 -0.02 0.83 16 29 H 0.06 0.86 7.65 -2.39 -0.02 0.85 16 30 H 0.17 3.25 6.24 -2.91 -0.02 3.23 16 31 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 32 H 0.12 4.40 8.06 -2.92 -0.02 4.37 16 33 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 34 H 0.13 5.49 8.06 -2.91 -0.02 5.46 16 35 H 0.28 13.46 8.29 -92.71 -0.77 12.69 16 36 H 0.18 7.72 8.06 -2.91 -0.02 7.70 16 Total: -1.00 -64.52 314.87 2.97 -61.55 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -0.77 Total: 30.07 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 4.98 Total: -25.92 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -2.32 Total: -97.25 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.95 Total: -9.38 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -64.52 2.97 -61.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236476953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.852 kcal (2) G-P(sol) polarization free energy of solvation -64.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds