Wall clock time and date at job start Tue Mar 31 2020 07:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99740 * 2 1 4 4 H 1.48501 * 109.46853 * 269.99275 * 3 2 1 5 5 H 1.48495 * 109.47129 * 29.99723 * 3 2 1 6 6 H 1.48497 * 109.47128 * 149.99862 * 3 2 1 7 7 C 1.38811 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 200.65668 * 7 2 1 9 9 N 1.36931 * 119.99757 * 20.93637 * 7 2 1 10 10 C 1.46501 * 120.00122 * 37.76074 * 9 7 2 11 11 C 1.52996 * 109.47307 * 90.00029 * 10 9 7 12 12 H 1.08995 * 109.47008 * 304.99394 * 11 10 9 13 13 O 1.42898 * 109.47347 * 64.99851 * 11 10 9 14 14 C 1.53005 * 109.46808 * 184.99956 * 11 10 9 15 15 O 1.42898 * 109.47047 * 174.99825 * 14 11 10 16 16 C 1.35940 * 117.00592 * 180.02562 * 15 14 11 17 17 C 1.38711 * 120.02771 * 359.72505 * 16 15 14 18 18 C 1.38148 * 119.97335 * 179.79234 * 17 16 15 19 19 C 1.38452 * 120.02560 * 0.48156 * 18 17 16 20 20 F 1.35106 * 119.96613 * 179.72207 * 19 18 17 21 21 C 1.38457 * 120.06538 * 359.74817 * 19 18 17 22 22 C 1.38149 * 120.02482 * 0.02562 * 21 19 18 23 23 C 1.46502 * 120.00140 * 217.75617 * 9 7 2 24 24 C 1.53006 * 117.49559 * 12.10542 * 23 9 7 25 25 C 1.53006 * 117.49630 * 303.45208 * 23 9 7 26 26 H 0.97001 * 120.00027 * 354.96786 * 1 2 3 27 27 H 1.09002 * 109.46762 * 210.00177 * 10 9 7 28 28 H 1.08999 * 109.46930 * 329.99599 * 10 9 7 29 29 H 0.96699 * 113.99861 * 60.00190 * 13 11 10 30 30 H 1.09000 * 109.47032 * 294.99812 * 14 11 10 31 31 H 1.09004 * 109.47202 * 54.99867 * 14 11 10 32 32 H 1.08010 * 120.00947 * 359.97438 * 17 16 15 33 33 H 1.07997 * 119.98578 * 180.20486 * 18 17 16 34 34 H 1.07994 * 119.98681 * 179.97438 * 21 19 18 35 35 H 1.08007 * 120.01306 * 179.97438 * 22 21 19 36 36 H 1.09001 * 115.55257 * 157.77695 * 23 9 7 37 37 H 1.08995 * 117.49639 * 0.02562 * 24 23 9 38 38 H 1.09001 * 117.49463 * 145.01680 * 24 23 9 39 39 H 1.09002 * 117.49239 * 214.97767 * 25 23 9 40 40 H 1.08995 * 117.50012 * 359.97421 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0382 -1.2320 0.3305 9 7 1.3934 -2.3490 -0.4227 10 6 0.4639 -2.3061 -1.5542 11 6 1.2329 -2.5440 -2.8553 12 1 2.0464 -1.8228 -2.9336 13 8 1.7689 -3.8687 -2.8565 14 6 0.2860 -2.3759 -4.0453 15 8 1.0270 -2.4828 -5.2625 16 6 0.3301 -2.3553 -6.4227 17 6 -1.0394 -2.1376 -6.3895 18 6 -1.7458 -2.0038 -7.5691 19 6 -1.0889 -2.0970 -8.7843 20 9 -1.7819 -1.9716 -9.9374 21 6 0.2773 -2.3190 -8.8192 22 6 0.9868 -2.4485 -7.6409 23 6 1.6631 -3.6191 0.2559 24 6 2.4088 -3.5624 1.5907 25 6 3.1194 -4.0809 0.3381 26 1 -0.4850 0.8368 0.0737 27 1 -0.2928 -3.0811 -1.4324 28 1 -0.0189 -1.3295 -1.5909 29 1 1.0999 -4.5637 -2.7893 30 1 -0.4772 -3.1536 -4.0151 31 1 -0.1907 -1.3969 -3.9950 32 1 -1.5527 -2.0697 -5.4416 33 1 -2.8115 -1.8310 -7.5434 34 1 0.7883 -2.3919 -9.7678 35 1 2.0525 -2.6221 -7.6683 36 1 0.8976 -4.3862 0.1393 37 1 2.6984 -2.5801 1.9641 38 1 2.1341 -4.2925 2.3521 39 1 3.3120 -5.1520 0.2757 40 1 3.8768 -3.4400 -0.1132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299535821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:36 Heat of formation + Delta-G solvation = -58.970326 kcal Electronic energy + Delta-G solvation = -23444.217559 eV Core-core repulsion = 19754.588096 eV Total energy + Delta-G solvation = -3689.629462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.90297 -40.09829 -37.91276 -36.99913 -35.83065 -33.41480 -31.44710 -30.98731 -29.93076 -28.72499 -25.74646 -24.03883 -23.02867 -22.07097 -21.30829 -20.93978 -19.92075 -18.32727 -17.50706 -16.93778 -16.37020 -16.18090 -15.64116 -15.53142 -15.23023 -14.79665 -14.44878 -14.25073 -13.98941 -13.75508 -13.64088 -13.30883 -13.09874 -12.56206 -12.36671 -12.18545 -11.83729 -11.24305 -11.05184 -10.90704 -10.89763 -10.70631 -10.58883 -10.53845 -10.21815 -10.07898 -9.61549 -9.47995 -9.32246 -9.22101 -8.54953 -8.12916 -6.55204 -5.94238 -3.50681 1.03094 1.13602 3.21038 3.29100 3.36226 3.38389 3.47616 4.20568 4.34093 4.56713 4.65177 4.93067 4.97038 4.99213 5.02717 5.17635 5.26958 5.30216 5.41550 5.50872 5.68611 5.76892 5.91984 5.99911 6.02279 6.05203 6.11842 6.17663 6.21220 6.30397 6.54186 6.60310 6.64015 6.86805 7.03622 7.19568 7.26637 7.42961 7.73102 8.24870 8.39443 9.03842 9.65877 10.23201 11.05977 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.003644 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.372577 B = 7682.695642 C = 8576.603237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.015 3.985 3 Si 0.899 3.101 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.260 4.260 8 H 0.064 0.936 9 N -0.541 5.541 10 C 0.127 3.873 11 C 0.088 3.912 12 H 0.105 0.895 13 O -0.547 6.547 14 C 0.027 3.973 15 O -0.299 6.299 16 C 0.131 3.869 17 C -0.185 4.185 18 C -0.111 4.111 19 C 0.046 3.954 20 F -0.146 7.146 21 C -0.113 4.113 22 C -0.129 4.129 23 C 0.135 3.865 24 C -0.201 4.201 25 C -0.215 4.215 26 H 0.258 0.742 27 H 0.033 0.967 28 H 0.106 0.894 29 H 0.358 0.642 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.891 -5.708 -12.170 13.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.185 4.185 3 Si 0.729 3.271 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.390 4.390 8 H 0.082 0.918 9 N -0.256 5.256 10 C -0.001 4.001 11 C 0.026 3.974 12 H 0.123 0.877 13 O -0.350 6.350 14 C -0.049 4.049 15 O -0.212 6.212 16 C 0.084 3.916 17 C -0.204 4.204 18 C -0.130 4.130 19 C 0.027 3.973 20 F -0.125 7.125 21 C -0.132 4.132 22 C -0.148 4.148 23 C 0.026 3.974 24 C -0.240 4.240 25 C -0.255 4.255 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.123 0.877 29 H 0.203 0.797 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.292 -5.220 -12.252 13.513 hybrid contribution -0.484 0.733 -0.062 0.881 sum -2.776 -4.487 -12.314 13.396 Atomic orbital electron populations 1.69876 1.05578 1.26293 1.51537 1.25221 0.95138 0.98771 0.99378 0.86338 0.79555 0.83214 0.78029 1.21058 1.21572 1.20075 1.18994 0.94447 0.84767 1.40742 0.91847 1.43127 1.50428 1.02476 1.29573 1.21471 0.90931 1.03512 0.84150 1.23051 0.97542 0.84951 0.91826 0.87693 1.86654 1.36965 1.14938 1.96487 1.23919 0.96297 1.01694 0.82970 1.86251 1.36877 1.85962 1.12117 1.19212 0.90431 0.94628 0.87313 1.21227 0.93434 1.06473 0.99246 1.20928 1.00765 1.00596 0.90674 1.17548 0.90313 1.07772 0.81667 1.91471 1.79375 1.94021 1.47590 1.20919 0.92227 1.00932 0.99129 1.20320 1.00977 1.04631 0.88890 1.20997 0.91368 0.90095 0.94915 1.23127 1.07267 1.02065 0.91495 1.23267 1.00357 0.98810 1.03115 0.93176 0.94896 0.87659 0.79748 0.92154 0.91010 0.84269 0.84650 0.84323 0.84170 0.89866 0.88434 0.90915 0.91057 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.86 11.45 55.49 0.64 -23.22 16 2 C 0.02 0.40 4.96 -17.43 -0.09 0.31 16 3 Si 0.90 20.72 29.61 -169.99 -5.03 15.69 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.26 -6.71 8.09 -15.06 -0.12 -6.83 16 8 H 0.06 1.69 7.31 -52.49 -0.38 1.30 16 9 N -0.54 -12.59 2.74 -165.66 -0.45 -13.05 16 10 C 0.13 2.63 4.99 -4.04 -0.02 2.61 16 11 C 0.09 1.61 3.49 -26.73 -0.09 1.52 16 12 H 0.11 2.24 8.14 -51.93 -0.42 1.82 16 13 O -0.55 -9.74 12.86 -40.08 -0.52 -10.26 16 14 C 0.03 0.41 4.37 37.16 0.16 0.57 16 15 O -0.30 -4.72 10.10 -24.40 -0.25 -4.97 16 16 C 0.13 1.79 6.69 -39.23 -0.26 1.53 16 17 C -0.19 -2.26 9.04 -39.44 -0.36 -2.62 16 18 C -0.11 -1.26 10.02 -39.54 -0.40 -1.65 16 19 C 0.05 0.54 7.30 -39.42 -0.29 0.26 16 20 F -0.15 -1.76 17.27 2.25 0.04 -1.73 16 21 C -0.11 -1.23 10.02 -39.53 -0.40 -1.63 16 22 C -0.13 -1.56 9.98 -39.44 -0.39 -1.95 16 23 C 0.14 2.80 6.21 -67.92 -0.42 2.38 16 24 C -0.20 -3.98 9.80 -26.69 -0.26 -4.25 16 25 C -0.21 -4.15 10.15 -26.69 -0.27 -4.42 16 26 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 27 H 0.03 0.62 8.04 -51.93 -0.42 0.20 16 28 H 0.11 2.46 5.51 -51.93 -0.29 2.18 16 29 H 0.36 5.01 9.05 45.56 0.41 5.43 16 30 H 0.06 0.78 7.65 -51.93 -0.40 0.38 16 31 H 0.07 1.07 7.67 -51.93 -0.40 0.67 16 32 H 0.14 1.54 6.30 -52.48 -0.33 1.21 16 33 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 36 H 0.08 1.57 8.11 -51.93 -0.42 1.15 16 37 H 0.10 2.14 6.88 -51.93 -0.36 1.79 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -28.48 342.03 -8.30 -36.78 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -4.67 Total: 9.77 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -3.21 Total: -14.18 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.18 Total: -36.27 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.76 Total: -15.23 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.48 -8.30 -36.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299535821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.189 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds