Wall clock time and date at job start Tue Mar 31 2020 06:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47132 * 2 1 4 4 C 1.38306 * 119.95998 * 270.01780 * 3 2 1 5 5 C 1.38266 * 120.13948 * 180.02562 * 4 3 2 6 6 C 1.38128 * 120.07372 * 359.70927 * 5 4 3 7 7 C 1.38873 * 119.92919 * 0.52694 * 6 5 4 8 8 N 1.39847 * 120.07363 * 179.77318 * 7 6 5 9 9 C 1.34773 * 119.99726 * 326.57016 * 8 7 6 10 10 O 1.21564 * 120.00457 * 355.06858 * 9 8 7 11 11 C 1.47855 * 119.99861 * 175.34649 * 9 8 7 12 12 C 1.39931 * 120.02299 * 359.44506 * 11 9 8 13 13 C 1.38334 * 120.35554 * 179.76703 * 12 11 9 14 14 C 1.37755 * 120.41034 * 0.51338 * 13 12 11 15 15 C 1.40750 * 120.04576 * 359.74198 * 14 13 12 16 16 C 1.41441 * 120.18166 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00151 * 151.34021 * 16 15 14 18 18 C 1.39934 * 119.99549 * 331.34892 * 16 15 14 19 19 N 1.30831 * 119.99869 * 166.77463 * 18 16 15 20 20 Si 1.86801 * 120.00344 * 346.77007 * 18 16 15 21 21 H 1.48502 * 109.46739 * 95.30795 * 20 18 16 22 22 H 1.48491 * 109.47255 * 215.30893 * 20 18 16 23 23 H 1.48498 * 109.47103 * 335.31158 * 20 18 16 24 24 C 1.39012 * 120.02847 * 179.72586 * 11 9 8 25 25 C 1.38086 * 119.96442 * 90.00220 * 3 2 1 26 26 H 1.09003 * 109.47165 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47064 * 300.00054 * 1 2 3 28 28 H 1.09000 * 109.47180 * 59.99939 * 1 2 3 29 29 H 1.09000 * 109.47363 * 239.99491 * 2 1 3 30 30 H 1.09004 * 109.46751 * 119.99836 * 2 1 3 31 31 H 1.07993 * 119.93289 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.96166 * 179.97438 * 5 4 3 33 33 H 1.08000 * 120.03415 * 180.28878 * 6 5 4 34 34 H 0.96994 * 119.99711 * 146.57509 * 8 7 6 35 35 H 1.07998 * 119.82832 * 0.02562 * 12 11 9 36 36 H 1.08000 * 119.79440 * 180.25918 * 13 12 11 37 37 H 1.08000 * 119.97788 * 179.76936 * 14 13 12 38 38 H 0.96993 * 120.00081 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.20132 * 359.94989 * 24 11 9 40 40 H 1.08006 * 120.03361 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0721 -1.1983 5 6 2.7236 3.3755 -1.2026 6 6 2.9507 4.0334 -0.0094 7 6 2.7256 3.3806 1.1955 8 7 2.9591 4.0422 2.4052 9 6 3.9553 4.9451 2.4981 10 8 4.7073 5.1194 1.5590 11 6 4.1376 5.7192 3.7446 12 6 3.2688 5.5231 4.8239 13 6 3.4359 6.2402 5.9950 14 6 4.4525 7.1628 6.1087 15 6 5.3330 7.3776 5.0318 16 6 6.3781 8.3238 5.1456 17 1 7.2903 8.1911 4.5829 18 6 6.2302 9.4317 5.9874 19 7 7.2708 10.1619 6.2967 20 14 4.5469 9.8683 6.6696 21 1 4.3916 9.2744 8.0218 22 1 4.4169 11.3448 6.7595 23 1 3.4940 9.3326 5.7698 24 6 5.1685 6.6465 3.8431 25 6 2.2623 2.0711 1.1963 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.0810 1.5617 -2.1325 32 1 2.9025 3.8813 -2.1400 33 1 3.3067 5.0530 -0.0136 34 1 2.4040 3.8512 3.1774 35 1 2.4661 4.8052 4.7437 36 1 2.7627 6.0786 6.8239 37 1 4.5743 7.7215 7.0249 38 1 7.1682 10.9301 6.8799 39 1 5.8391 6.8038 3.0112 40 1 2.0827 1.5617 2.1316 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042212140.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:58 Heat of formation + Delta-G solvation = -2.046355 kcal Electronic energy + Delta-G solvation = -21984.724142 eV Core-core repulsion = 18728.332313 eV Total energy + Delta-G solvation = -3256.391829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.41181 -38.79518 -37.41095 -35.02580 -33.87323 -33.53233 -31.03299 -30.20931 -29.82927 -28.81534 -25.34296 -24.22019 -23.71179 -22.22089 -21.25342 -20.76869 -19.66535 -18.21470 -17.06672 -16.40230 -16.15582 -15.84819 -15.33752 -14.74823 -14.57585 -14.45077 -13.99495 -13.78032 -13.59044 -13.50324 -13.13699 -12.86377 -12.80909 -12.37004 -12.14714 -11.92764 -11.76429 -11.60277 -11.23540 -11.16544 -10.95571 -10.82905 -10.63013 -10.19142 -9.98670 -9.78611 -9.53659 -9.24456 -8.74487 -8.08374 -7.91422 -7.81495 -7.05246 -4.63229 1.27121 1.39866 1.86774 2.44144 2.99728 3.13625 3.20710 3.29126 3.41614 3.85374 3.87568 4.41611 4.60590 4.75267 4.96950 5.13276 5.17890 5.19721 5.25412 5.34248 5.40511 5.52697 5.61183 5.68610 5.75653 5.84113 5.93133 5.94440 6.04821 6.23571 6.39149 6.42891 6.56425 6.57705 6.60043 6.64626 6.88380 7.09467 7.14393 7.29838 7.39125 7.60648 7.66674 7.87680 8.20504 8.43363 8.48288 8.63633 9.96675 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.033958 B = 0.003012 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.359847 B = 9292.765745 C = 9778.352828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.066 4.066 4 C -0.142 4.142 5 C -0.097 4.097 6 C -0.128 4.128 7 C 0.163 3.837 8 N -0.677 5.677 9 C 0.564 3.436 10 O -0.526 6.526 11 C -0.110 4.110 12 C -0.217 4.217 13 C -0.081 4.081 14 C -0.220 4.220 15 C 0.080 3.920 16 C -0.436 4.436 17 H 0.095 0.905 18 C 0.080 3.920 19 N -0.804 5.804 20 Si 0.914 3.086 21 H -0.270 1.270 22 H -0.291 1.291 23 H -0.240 1.240 24 C -0.132 4.132 25 C -0.151 4.151 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.135 0.865 34 H 0.411 0.589 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.288 0.712 39 H 0.117 0.883 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.730 -14.036 -7.839 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.067 4.067 4 C -0.161 4.161 5 C -0.116 4.116 6 C -0.148 4.148 7 C 0.068 3.932 8 N -0.322 5.322 9 C 0.356 3.644 10 O -0.402 6.402 11 C -0.113 4.113 12 C -0.237 4.237 13 C -0.099 4.099 14 C -0.239 4.239 15 C 0.077 3.923 16 C -0.464 4.464 17 H 0.113 0.887 18 C -0.140 4.140 19 N -0.428 5.428 20 Si 0.742 3.258 21 H -0.197 1.197 22 H -0.219 1.219 23 H -0.163 1.163 24 C -0.152 4.152 25 C -0.171 4.171 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.153 0.847 34 H 0.248 0.752 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.135 0.865 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.982 -13.618 -8.347 19.968 hybrid contribution -0.818 0.270 0.923 1.263 sum -12.801 -13.348 -7.425 19.929 Atomic orbital electron populations 1.21746 0.94777 1.01534 1.02295 1.20523 0.96103 0.92641 1.02787 1.19605 0.98601 0.95893 0.92585 1.20923 1.02599 0.95342 0.97264 1.21008 0.98250 0.94681 0.97656 1.21235 1.01455 1.01219 0.90921 1.17791 0.98023 0.91183 0.86164 1.43619 1.34709 1.41764 1.12140 1.18949 0.78670 0.78312 0.88454 1.90721 1.43798 1.65778 1.39916 1.19313 0.99871 0.99688 0.92418 1.20367 1.02371 1.06113 0.94883 1.20486 0.97036 0.96132 0.96269 1.21119 1.00960 1.03168 0.98693 1.17705 0.91899 0.92514 0.90152 1.19573 1.01426 1.04191 1.21223 0.88748 1.26210 0.99078 0.95484 0.93192 1.69649 1.31525 1.14518 1.27077 0.86270 0.83076 0.76389 0.80107 1.19668 1.21863 1.16340 1.21252 0.98167 0.98341 0.97482 1.20732 1.05413 0.92718 0.98284 0.92533 0.92524 0.92536 0.91040 0.91100 0.86367 0.85891 0.84677 0.75182 0.88562 0.88122 0.88018 0.90194 0.86508 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.08 -0.68 6.06 -27.88 -0.17 -0.85 16 3 C -0.07 -0.73 5.13 -104.65 -0.54 -1.26 16 4 C -0.14 -1.57 9.70 -39.55 -0.38 -1.96 16 5 C -0.10 -1.22 10.04 -39.61 -0.40 -1.61 16 6 C -0.13 -1.95 8.65 -39.39 -0.34 -2.29 16 7 C 0.16 2.42 6.28 -83.72 -0.53 1.89 16 8 N -0.68 -10.44 5.28 -10.71 -0.06 -10.50 16 9 C 0.56 10.94 7.51 -12.33 -0.09 10.85 16 10 O -0.53 -11.54 14.01 5.31 0.07 -11.46 16 11 C -0.11 -2.28 5.87 -105.04 -0.62 -2.90 16 12 C -0.22 -4.07 9.54 -38.91 -0.37 -4.44 16 13 C -0.08 -1.61 10.01 -39.72 -0.40 -2.00 16 14 C -0.22 -5.01 6.91 -38.81 -0.27 -5.28 16 15 C 0.08 1.98 5.19 -106.87 -0.55 1.43 16 16 C -0.44 -11.54 9.61 -37.73 -0.36 -11.90 16 17 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 18 C 0.08 2.04 5.47 -17.34 -0.09 1.94 16 19 N -0.80 -20.95 13.93 55.55 0.77 -20.18 16 20 Si 0.91 20.03 24.37 -169.99 -4.14 15.89 16 21 H -0.27 -5.68 6.77 56.52 0.38 -5.30 16 22 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.24 -5.35 6.48 56.52 0.37 -4.98 16 24 C -0.13 -3.11 9.34 -38.44 -0.36 -3.47 16 25 C -0.15 -1.85 9.62 -39.39 -0.38 -2.23 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.14 2.31 6.41 -52.49 -0.34 1.97 16 34 H 0.41 5.22 6.85 -40.82 -0.28 4.94 16 35 H 0.10 1.43 6.39 -52.49 -0.34 1.10 16 36 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.10 2.29 4.19 -52.49 -0.22 2.07 16 38 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 39 H 0.12 2.79 7.64 -52.49 -0.40 2.39 16 40 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 333.42 15.07 5.02 5.02 Total: -1.00 -28.52 333.42 -8.79 -37.31 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.98 Total: 8.68 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -5.48 Total: -24.77 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 0.72 Total: -30.68 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.07 Total: -11.46 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.14 Total: 15.89 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.52 -8.79 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042212140.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.265 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds