Wall clock time and date at job start Tue Mar 31 2020 06:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47132 * 2 1 4 4 C 1.38306 * 119.95998 * 270.01780 * 3 2 1 5 5 C 1.38266 * 120.13948 * 180.02562 * 4 3 2 6 6 C 1.38128 * 120.07372 * 359.70927 * 5 4 3 7 7 C 1.38873 * 119.92919 * 0.52694 * 6 5 4 8 8 N 1.39847 * 120.07363 * 179.77318 * 7 6 5 9 9 C 1.34773 * 119.99726 * 326.57016 * 8 7 6 10 10 O 1.21564 * 120.00457 * 355.06858 * 9 8 7 11 11 C 1.47855 * 119.99861 * 175.34649 * 9 8 7 12 12 C 1.39931 * 120.02299 * 359.44506 * 11 9 8 13 13 C 1.38334 * 120.35554 * 179.76703 * 12 11 9 14 14 C 1.37755 * 120.41034 * 0.51338 * 13 12 11 15 15 C 1.40750 * 120.04576 * 359.74198 * 14 13 12 16 16 C 1.41441 * 120.18166 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00151 * 151.34021 * 16 15 14 18 18 C 1.39934 * 119.99549 * 331.34892 * 16 15 14 19 19 N 1.30831 * 119.99869 * 166.77463 * 18 16 15 20 20 Si 1.86801 * 120.00344 * 346.77007 * 18 16 15 21 21 H 1.48502 * 109.46739 * 95.30795 * 20 18 16 22 22 H 1.48491 * 109.47255 * 215.30893 * 20 18 16 23 23 H 1.48498 * 109.47103 * 335.31158 * 20 18 16 24 24 C 1.39012 * 120.02847 * 179.72586 * 11 9 8 25 25 C 1.38086 * 119.96442 * 90.00220 * 3 2 1 26 26 H 1.09003 * 109.47165 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47064 * 300.00054 * 1 2 3 28 28 H 1.09000 * 109.47180 * 59.99939 * 1 2 3 29 29 H 1.09000 * 109.47363 * 239.99491 * 2 1 3 30 30 H 1.09004 * 109.46751 * 119.99836 * 2 1 3 31 31 H 1.07993 * 119.93289 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.96166 * 179.97438 * 5 4 3 33 33 H 1.08000 * 120.03415 * 180.28878 * 6 5 4 34 34 H 0.96994 * 119.99711 * 146.57509 * 8 7 6 35 35 H 1.07998 * 119.82832 * 0.02562 * 12 11 9 36 36 H 1.08000 * 119.79440 * 180.25918 * 13 12 11 37 37 H 1.08000 * 119.97788 * 179.76936 * 14 13 12 38 38 H 0.96993 * 120.00081 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.20132 * 359.94989 * 24 11 9 40 40 H 1.08006 * 120.03361 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0721 -1.1983 5 6 2.7236 3.3755 -1.2026 6 6 2.9507 4.0334 -0.0094 7 6 2.7256 3.3806 1.1955 8 7 2.9591 4.0422 2.4052 9 6 3.9553 4.9451 2.4981 10 8 4.7073 5.1194 1.5590 11 6 4.1376 5.7192 3.7446 12 6 3.2688 5.5231 4.8239 13 6 3.4359 6.2402 5.9950 14 6 4.4525 7.1628 6.1087 15 6 5.3330 7.3776 5.0318 16 6 6.3781 8.3238 5.1456 17 1 7.2903 8.1911 4.5829 18 6 6.2302 9.4317 5.9874 19 7 7.2708 10.1619 6.2967 20 14 4.5469 9.8683 6.6696 21 1 4.3916 9.2744 8.0218 22 1 4.4169 11.3448 6.7595 23 1 3.4940 9.3326 5.7698 24 6 5.1685 6.6465 3.8431 25 6 2.2623 2.0711 1.1963 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.0810 1.5617 -2.1325 32 1 2.9025 3.8813 -2.1400 33 1 3.3067 5.0530 -0.0136 34 1 2.4040 3.8512 3.1774 35 1 2.4661 4.8052 4.7437 36 1 2.7627 6.0786 6.8239 37 1 4.5743 7.7215 7.0249 38 1 7.1682 10.9301 6.8799 39 1 5.8391 6.8038 3.0112 40 1 2.0827 1.5617 2.1316 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042212140.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:57 Heat of formation + Delta-G solvation = -17.717244 kcal Electronic energy + Delta-G solvation = -21985.403683 eV Core-core repulsion = 18728.332313 eV Total energy + Delta-G solvation = -3257.071370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73082 -40.05596 -39.02289 -36.25271 -35.60793 -34.54160 -32.69448 -31.89408 -30.85056 -29.84486 -27.16855 -25.41822 -24.79342 -23.30254 -22.56999 -22.40428 -20.97361 -19.79987 -18.45886 -17.94066 -17.48161 -17.15111 -16.50690 -16.48922 -15.83199 -15.71272 -15.45346 -15.06596 -14.60363 -14.54308 -14.50101 -14.31175 -14.06283 -13.85832 -13.42299 -13.30666 -12.90796 -12.76983 -12.63237 -12.48109 -12.35222 -11.93797 -11.70244 -11.68360 -11.61585 -11.40185 -11.18369 -10.85595 -9.72371 -9.68299 -9.66008 -9.06620 -8.92788 -6.60044 -0.05296 0.42971 0.47662 0.70643 1.23607 1.40825 1.47751 1.85546 1.98917 2.09401 2.59973 2.85607 3.41030 3.69444 3.83249 3.97527 4.20138 4.21780 4.32983 4.35934 4.41168 4.46713 4.56372 4.61866 4.66045 4.74678 4.82528 4.86486 5.08259 5.11879 5.14326 5.16812 5.34246 5.38087 5.40332 5.46581 5.56683 5.59365 5.65150 5.70440 5.79474 6.04529 6.09748 6.24855 6.41949 6.60171 6.69722 7.06056 8.16079 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.033958 B = 0.003012 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.359847 B = 9292.765745 C = 9778.352828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.065 4.065 4 C -0.136 4.136 5 C -0.104 4.104 6 C -0.156 4.156 7 C 0.135 3.865 8 N -0.656 5.656 9 C 0.563 3.437 10 O -0.562 6.562 11 C -0.113 4.113 12 C -0.182 4.182 13 C -0.080 4.080 14 C -0.223 4.223 15 C 0.065 3.935 16 C -0.483 4.483 17 H 0.049 0.951 18 C 0.039 3.961 19 N -0.852 5.852 20 Si 0.972 3.028 21 H -0.247 1.247 22 H -0.282 1.282 23 H -0.244 1.244 24 C -0.163 4.163 25 C -0.146 4.146 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.425 0.575 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.107 0.893 38 H 0.296 0.704 39 H 0.090 0.910 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.208 -17.570 -7.202 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.065 4.065 4 C -0.154 4.154 5 C -0.122 4.122 6 C -0.177 4.177 7 C 0.041 3.959 8 N -0.302 5.302 9 C 0.354 3.646 10 O -0.441 6.441 11 C -0.117 4.117 12 C -0.201 4.201 13 C -0.098 4.098 14 C -0.242 4.242 15 C 0.062 3.938 16 C -0.513 4.513 17 H 0.068 0.932 18 C -0.174 4.174 19 N -0.478 5.478 20 Si 0.795 3.205 21 H -0.172 1.172 22 H -0.209 1.209 23 H -0.168 1.168 24 C -0.184 4.184 25 C -0.166 4.166 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.166 0.834 32 H 0.156 0.844 33 H 0.122 0.878 34 H 0.266 0.734 35 H 0.168 0.832 36 H 0.168 0.832 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.492 -17.196 -7.708 25.041 hybrid contribution 0.422 1.051 0.526 1.249 sum -16.070 -16.145 -7.182 23.884 Atomic orbital electron populations 1.21738 0.93895 1.02519 1.02045 1.20596 0.96706 0.90585 1.03967 1.20040 0.97209 0.97265 0.92003 1.21305 1.00796 0.94516 0.98796 1.21231 0.98101 0.95573 0.97323 1.21189 1.03295 1.00505 0.92682 1.17985 1.00076 0.92444 0.85377 1.43289 1.33391 1.40379 1.13144 1.18760 0.79368 0.78959 0.87500 1.90714 1.45481 1.67061 1.40885 1.19555 0.99158 0.98923 0.94019 1.21016 1.01441 1.04678 0.92953 1.21036 0.96419 0.94361 0.97985 1.21358 1.01054 1.03808 0.97961 1.17774 0.92274 0.92474 0.91274 1.19501 1.01356 1.06992 1.23422 0.93242 1.26980 1.02597 0.94706 0.93165 1.69692 1.33352 1.15768 1.29017 0.85412 0.78230 0.76715 0.80148 1.17177 1.20889 1.16772 1.21164 0.99698 1.00591 0.96905 1.20992 1.04162 0.91469 0.99972 0.90990 0.92918 0.92693 0.89691 0.90220 0.83450 0.84422 0.87768 0.73437 0.83178 0.83168 0.87562 0.89398 0.89186 0.83620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.89 71.98 0.71 -0.77 16 2 C -0.08 -0.97 6.06 29.85 0.18 -0.79 16 3 C -0.06 -1.18 5.13 -19.88 -0.10 -1.29 16 4 C -0.14 -2.58 9.70 22.29 0.22 -2.37 16 5 C -0.10 -2.48 10.04 22.25 0.22 -2.25 16 6 C -0.16 -4.79 8.65 22.40 0.19 -4.60 16 7 C 0.14 3.79 6.28 38.18 0.24 4.03 16 8 N -0.66 -18.89 5.28 -306.08 -1.62 -20.51 16 9 C 0.56 21.77 7.51 86.79 0.65 22.42 16 10 O -0.56 -25.88 14.01 -3.92 -0.05 -25.94 16 11 C -0.11 -4.64 5.87 -20.14 -0.12 -4.76 16 12 C -0.18 -6.01 9.54 22.70 0.22 -5.79 16 13 C -0.08 -2.81 10.01 22.18 0.22 -2.59 16 14 C -0.22 -9.79 6.91 22.77 0.16 -9.63 16 15 C 0.06 3.31 5.19 -21.32 -0.11 3.20 16 16 C -0.48 -27.77 9.61 23.47 0.23 -27.54 16 17 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 18 C 0.04 2.12 5.47 85.25 0.47 2.59 16 19 N -0.85 -47.22 13.93 21.82 0.30 -46.92 16 20 Si 0.97 41.38 24.37 68.60 1.67 43.05 16 21 H -0.25 -9.50 6.77 99.48 0.67 -8.83 16 22 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 23 H -0.24 -10.40 6.48 99.48 0.64 -9.76 16 24 C -0.16 -8.08 9.34 23.01 0.21 -7.87 16 25 C -0.15 -3.11 9.62 22.39 0.22 -2.89 16 26 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 30 H 0.08 0.85 8.08 -2.38 -0.02 0.83 16 31 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 32 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 33 H 0.10 3.80 6.41 -2.91 -0.02 3.78 16 34 H 0.43 9.03 6.85 -92.71 -0.63 8.40 16 35 H 0.15 3.40 6.39 -2.91 -0.02 3.38 16 36 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 37 H 0.11 4.56 4.19 -2.91 -0.01 4.55 16 38 H 0.30 14.59 8.30 -92.71 -0.77 13.82 16 39 H 0.09 4.80 7.64 -2.91 -0.02 4.78 16 40 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -69.02 333.42 4.44 -64.58 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.33 Total: 26.62 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 3.81 Total: -40.89 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: -1.31 Total: -67.42 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.05 Total: -25.94 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.67 Total: 43.05 kcal Total: -69.02 4.44 -64.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042212140.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.864 kcal (2) G-P(sol) polarization free energy of solvation -69.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds