Wall clock time and date at job start Tue Mar 31 2020 06:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47105 * 2 1 4 4 C 1.38129 * 120.04022 * 265.02476 * 3 2 1 5 5 C 1.38252 * 120.07527 * 179.97438 * 4 3 2 6 6 C 1.38314 * 120.14772 * 359.76561 * 5 4 3 7 7 C 1.38086 * 120.06863 * 0.51119 * 6 5 4 8 8 C 1.38874 * 120.03246 * 84.99674 * 3 2 1 9 9 N 1.39846 * 120.07416 * 0.04737 * 8 3 2 10 10 C 1.34775 * 119.99792 * 145.47574 * 9 8 3 11 11 O 1.21561 * 120.00196 * 4.16295 * 10 9 8 12 12 C 1.47851 * 119.99822 * 184.16512 * 10 9 8 13 13 C 1.39934 * 120.02884 * 359.72088 * 12 10 9 14 14 C 1.38320 * 120.35887 * 179.76028 * 13 12 10 15 15 C 1.37760 * 120.41505 * 0.52171 * 14 13 12 16 16 C 1.40757 * 120.03976 * 359.73869 * 15 14 13 17 17 C 1.41430 * 120.17579 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00453 * 34.65396 * 17 16 15 19 19 C 1.39936 * 119.99852 * 214.65116 * 17 16 15 20 20 N 1.30824 * 120.00143 * 355.73008 * 19 17 16 21 21 Si 1.86808 * 120.00126 * 175.72881 * 19 17 16 22 22 H 1.48495 * 109.46899 * 59.99599 * 21 19 17 23 23 H 1.48499 * 109.47138 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46835 * 300.00204 * 21 19 17 25 25 C 1.39016 * 120.02587 * 179.97438 * 12 10 9 26 26 H 1.09006 * 109.47180 * 60.00280 * 1 2 3 27 27 H 1.09009 * 109.46701 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47538 * 299.99954 * 1 2 3 29 29 H 1.08997 * 109.47538 * 240.00046 * 2 1 3 30 30 H 1.09006 * 109.47180 * 119.99720 * 2 1 3 31 31 H 1.08001 * 119.95714 * 359.96953 * 4 3 2 32 32 H 1.07995 * 119.93026 * 180.02562 * 5 4 3 33 33 H 1.07995 * 119.96974 * 180.25409 * 6 5 4 34 34 H 1.07992 * 120.03770 * 179.74552 * 7 6 5 35 35 H 0.96996 * 119.99750 * 325.47287 * 9 8 3 36 36 H 1.08002 * 119.82084 * 0.02562 * 13 12 10 37 37 H 1.08002 * 119.79952 * 180.23745 * 14 13 12 38 38 H 1.07996 * 119.98256 * 179.76497 * 15 14 13 39 39 H 0.97005 * 120.00043 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.20722 * 359.95848 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0382 -1.1912 5 6 2.8210 3.3418 -1.1921 6 6 2.9499 4.0338 -0.0015 7 6 2.6289 3.4206 1.1934 8 6 2.1651 2.1111 1.1977 9 7 1.8341 1.4889 2.4056 10 6 2.5342 1.7700 3.5224 11 8 3.4033 2.6194 3.4973 12 6 2.2450 1.0450 4.7781 13 6 1.2406 0.0711 4.8092 14 6 0.9678 -0.6147 5.9790 15 6 1.6738 -0.3397 7.1295 16 6 2.6841 0.6403 7.1190 17 6 3.4111 0.9245 8.2984 18 1 3.6381 0.1327 8.9970 19 6 3.8365 2.2317 8.5602 20 7 3.6352 3.1746 7.6760 21 14 4.6918 2.6304 10.1725 22 1 5.9304 1.8198 10.2893 23 1 5.0392 4.0738 10.2048 24 1 3.7848 2.3145 11.3052 25 6 2.9671 1.3341 5.9303 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.2575 1.5018 -2.1230 32 1 3.0766 3.8224 -2.1249 33 1 3.3059 5.0534 -0.0059 34 1 2.7337 3.9600 2.1231 35 1 1.1006 0.8551 2.4395 36 1 0.6784 -0.1492 3.9138 37 1 0.1932 -1.3672 5.9918 38 1 1.4524 -0.8768 8.0399 39 1 3.9304 4.0807 7.8573 40 1 3.7408 2.0873 5.9120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042219556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:01 Heat of formation + Delta-G solvation = -1.792399 kcal Electronic energy + Delta-G solvation = -22637.339631 eV Core-core repulsion = 19380.958814 eV Total energy + Delta-G solvation = -3256.380817 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.36581 -38.49699 -37.03750 -34.72492 -33.77555 -33.57253 -30.67867 -29.64245 -29.47532 -28.62937 -25.37639 -23.94798 -23.55313 -21.84439 -21.06267 -20.63516 -19.56141 -17.94477 -17.27110 -16.05867 -15.80003 -15.35823 -15.11864 -14.76263 -14.40132 -14.09869 -13.81147 -13.60769 -13.54559 -13.18950 -13.00584 -12.71625 -12.60163 -12.14915 -11.88087 -11.72980 -11.56087 -11.18373 -11.11770 -10.97620 -10.87951 -10.80624 -10.51370 -10.09839 -9.95835 -9.80478 -9.32634 -9.08674 -8.59818 -7.92922 -7.65669 -7.47407 -6.69121 -4.50616 1.40879 1.55315 2.12325 2.77733 3.07012 3.08788 3.11489 3.49802 3.66303 3.92701 4.00951 4.64467 4.75704 4.86467 5.14376 5.18120 5.29995 5.34625 5.47750 5.53203 5.54620 5.67427 5.80409 5.85101 5.93779 5.98825 6.12600 6.15785 6.22418 6.48964 6.58819 6.65238 6.69002 6.77377 6.90296 6.94693 7.20308 7.28056 7.30935 7.59293 7.65276 7.82815 7.97721 8.13850 8.46022 8.72486 8.78090 8.81670 10.21756 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.021087 B = 0.003943 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.497593 B = 7099.399125 C = 8278.665121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.117 4.117 4 C -0.103 4.103 5 C -0.144 4.144 6 C -0.107 4.107 7 C -0.122 4.122 8 C 0.162 3.838 9 N -0.677 5.677 10 C 0.563 3.437 11 O -0.522 6.522 12 C -0.137 4.137 13 C -0.205 4.205 14 C -0.105 4.105 15 C -0.196 4.196 16 C 0.094 3.906 17 C -0.464 4.464 18 H 0.079 0.921 19 C 0.069 3.931 20 N -0.803 5.803 21 Si 0.918 3.082 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.266 1.266 25 C -0.077 4.077 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.142 0.858 35 H 0.408 0.592 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.283 0.717 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 -2.305 -13.264 14.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.163 4.163 6 C -0.126 4.126 7 C -0.142 4.142 8 C 0.067 3.933 9 N -0.323 5.323 10 C 0.356 3.644 11 O -0.398 6.398 12 C -0.140 4.140 13 C -0.225 4.225 14 C -0.123 4.123 15 C -0.216 4.216 16 C 0.092 3.908 17 C -0.494 4.494 18 H 0.097 0.903 19 C -0.148 4.148 20 N -0.429 5.429 21 Si 0.743 3.257 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.190 1.190 25 C -0.097 4.097 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.160 0.840 35 H 0.246 0.754 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.790 -1.467 -13.219 13.829 hybrid contribution -0.093 -0.024 0.696 0.702 sum -3.883 -1.492 -12.523 13.196 Atomic orbital electron populations 1.21779 0.94859 1.01784 1.02145 1.20481 0.95988 0.92702 1.03136 1.19679 1.03956 0.96133 0.92248 1.20744 0.99692 0.95094 0.96598 1.21021 1.02276 0.95089 0.97898 1.21035 0.99666 0.99814 0.92055 1.21421 1.00077 0.93222 0.99492 1.17689 0.98875 0.91638 0.85094 1.43669 1.35846 1.45761 1.07054 1.19022 0.80010 0.82047 0.83360 1.90702 1.32153 1.32279 1.84693 1.19459 1.01569 1.00350 0.92642 1.20411 1.02507 1.02080 0.97517 1.20458 0.99394 0.99126 0.93338 1.21291 0.98969 1.04460 0.96871 1.17652 0.90397 0.90359 0.92434 1.19507 1.30861 0.94317 1.04749 0.90263 1.25929 0.94014 0.96206 0.98606 1.69703 1.36614 1.02770 1.33768 0.86203 0.80065 0.77982 0.81477 1.18933 1.20284 1.19031 1.21967 0.98742 0.99814 0.89197 0.92427 0.92184 0.92776 0.90845 0.90907 0.86201 0.86434 0.86076 0.84042 0.75390 0.89233 0.88630 0.88328 0.90593 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.82 37.16 0.36 -1.05 16 2 C -0.09 -0.94 5.47 -27.88 -0.15 -1.10 16 3 C -0.12 -1.59 5.15 -104.43 -0.54 -2.13 16 4 C -0.10 -1.23 9.67 -39.62 -0.38 -1.62 16 5 C -0.14 -1.74 10.04 -39.55 -0.40 -2.14 16 6 C -0.11 -1.49 10.04 -39.61 -0.40 -1.89 16 7 C -0.12 -2.07 8.70 -39.38 -0.34 -2.41 16 8 C 0.16 2.66 6.29 -83.71 -0.53 2.14 16 9 N -0.68 -11.71 4.73 -10.71 -0.05 -11.76 16 10 C 0.56 12.20 7.62 -12.33 -0.09 12.11 16 11 O -0.52 -12.75 13.74 5.31 0.07 -12.68 16 12 C -0.14 -3.16 5.87 -105.04 -0.62 -3.77 16 13 C -0.21 -4.16 9.55 -38.92 -0.37 -4.53 16 14 C -0.10 -2.15 10.01 -39.73 -0.40 -2.55 16 15 C -0.20 -4.51 9.78 -38.80 -0.38 -4.89 16 16 C 0.09 2.43 5.55 -106.87 -0.59 1.84 16 17 C -0.46 -12.06 9.04 -37.73 -0.34 -12.40 16 18 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 19 C 0.07 1.73 5.42 -17.35 -0.09 1.64 16 20 N -0.80 -21.16 10.60 55.55 0.59 -20.57 16 21 Si 0.92 18.82 29.56 -169.99 -5.03 13.79 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 C -0.08 -2.01 8.21 -38.43 -0.32 -2.33 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 28 H 0.05 0.55 7.29 -51.93 -0.38 0.17 16 29 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 30 H 0.07 0.87 7.43 -51.93 -0.39 0.48 16 31 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 34 H 0.14 2.72 6.19 -52.49 -0.32 2.39 16 35 H 0.41 6.07 5.06 -40.82 -0.21 5.87 16 36 H 0.09 1.49 6.39 -52.49 -0.34 1.15 16 37 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 40 H 0.15 4.14 5.72 -52.49 -0.30 3.84 16 LS Contribution 335.03 15.07 5.05 5.05 Total: -1.00 -28.81 335.03 -9.80 -38.60 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -4.86 Total: 12.64 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -5.57 Total: -25.07 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.54 Total: -32.33 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.68 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.81 -9.80 -38.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042219556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.810 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds