Wall clock time and date at job start Tue Mar 31 2020 06:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47105 * 2 1 4 4 C 1.38129 * 120.04022 * 265.02476 * 3 2 1 5 5 C 1.38252 * 120.07527 * 179.97438 * 4 3 2 6 6 C 1.38314 * 120.14772 * 359.76561 * 5 4 3 7 7 C 1.38086 * 120.06863 * 0.51119 * 6 5 4 8 8 C 1.38874 * 120.03246 * 84.99674 * 3 2 1 9 9 N 1.39846 * 120.07416 * 0.04737 * 8 3 2 10 10 C 1.34775 * 119.99792 * 145.47574 * 9 8 3 11 11 O 1.21561 * 120.00196 * 4.16295 * 10 9 8 12 12 C 1.47851 * 119.99822 * 184.16512 * 10 9 8 13 13 C 1.39934 * 120.02884 * 359.72088 * 12 10 9 14 14 C 1.38320 * 120.35887 * 179.76028 * 13 12 10 15 15 C 1.37760 * 120.41505 * 0.52171 * 14 13 12 16 16 C 1.40757 * 120.03976 * 359.73869 * 15 14 13 17 17 C 1.41430 * 120.17579 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00453 * 34.65396 * 17 16 15 19 19 C 1.39936 * 119.99852 * 214.65116 * 17 16 15 20 20 N 1.30824 * 120.00143 * 355.73008 * 19 17 16 21 21 Si 1.86808 * 120.00126 * 175.72881 * 19 17 16 22 22 H 1.48495 * 109.46899 * 59.99599 * 21 19 17 23 23 H 1.48499 * 109.47138 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46835 * 300.00204 * 21 19 17 25 25 C 1.39016 * 120.02587 * 179.97438 * 12 10 9 26 26 H 1.09006 * 109.47180 * 60.00280 * 1 2 3 27 27 H 1.09009 * 109.46701 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47538 * 299.99954 * 1 2 3 29 29 H 1.08997 * 109.47538 * 240.00046 * 2 1 3 30 30 H 1.09006 * 109.47180 * 119.99720 * 2 1 3 31 31 H 1.08001 * 119.95714 * 359.96953 * 4 3 2 32 32 H 1.07995 * 119.93026 * 180.02562 * 5 4 3 33 33 H 1.07995 * 119.96974 * 180.25409 * 6 5 4 34 34 H 1.07992 * 120.03770 * 179.74552 * 7 6 5 35 35 H 0.96996 * 119.99750 * 325.47287 * 9 8 3 36 36 H 1.08002 * 119.82084 * 0.02562 * 13 12 10 37 37 H 1.08002 * 119.79952 * 180.23745 * 14 13 12 38 38 H 1.07996 * 119.98256 * 179.76497 * 15 14 13 39 39 H 0.97005 * 120.00043 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.20722 * 359.95848 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0382 -1.1912 5 6 2.8210 3.3418 -1.1921 6 6 2.9499 4.0338 -0.0015 7 6 2.6289 3.4206 1.1934 8 6 2.1651 2.1111 1.1977 9 7 1.8341 1.4889 2.4056 10 6 2.5342 1.7700 3.5224 11 8 3.4033 2.6194 3.4973 12 6 2.2450 1.0450 4.7781 13 6 1.2406 0.0711 4.8092 14 6 0.9678 -0.6147 5.9790 15 6 1.6738 -0.3397 7.1295 16 6 2.6841 0.6403 7.1190 17 6 3.4111 0.9245 8.2984 18 1 3.6381 0.1327 8.9970 19 6 3.8365 2.2317 8.5602 20 7 3.6352 3.1746 7.6760 21 14 4.6918 2.6304 10.1725 22 1 5.9304 1.8198 10.2893 23 1 5.0392 4.0738 10.2048 24 1 3.7848 2.3145 11.3052 25 6 2.9671 1.3341 5.9303 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.2575 1.5018 -2.1230 32 1 3.0766 3.8224 -2.1249 33 1 3.3059 5.0534 -0.0059 34 1 2.7337 3.9600 2.1231 35 1 1.1006 0.8551 2.4395 36 1 0.6784 -0.1492 3.9138 37 1 0.1932 -1.3672 5.9918 38 1 1.4524 -0.8768 8.0399 39 1 3.9304 4.0807 7.8573 40 1 3.7408 2.0873 5.9120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042219556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:00 Heat of formation + Delta-G solvation = -16.218254 kcal Electronic energy + Delta-G solvation = -22637.965183 eV Core-core repulsion = 19380.958814 eV Total energy + Delta-G solvation = -3257.006369 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.76920 -39.92441 -38.75089 -36.06790 -35.48802 -34.75242 -32.34356 -31.33835 -30.69612 -29.83162 -27.23597 -25.21195 -24.71730 -23.23299 -22.78209 -21.76902 -21.16705 -19.59751 -18.69717 -17.70548 -17.12320 -16.78096 -16.52492 -16.42742 -15.92286 -15.43323 -15.12189 -15.00104 -14.64447 -14.49226 -14.39753 -14.30034 -14.07871 -13.58339 -13.09599 -12.89801 -12.81202 -12.74062 -12.59671 -12.55099 -12.21202 -11.93605 -11.87429 -11.78174 -11.58647 -11.31686 -11.13900 -10.75614 -9.69244 -9.59324 -9.31905 -9.02869 -8.53944 -6.46354 0.08904 0.44392 0.55239 0.99388 1.36642 1.46290 1.49899 1.99892 2.07256 2.21019 2.77505 2.88444 3.60557 3.79097 3.86482 3.93651 4.20739 4.31095 4.35077 4.47864 4.48652 4.52103 4.59956 4.64451 4.78865 4.85567 5.04506 5.08664 5.10300 5.13146 5.15658 5.32084 5.39902 5.41212 5.48429 5.50008 5.61251 5.62952 5.80829 5.85972 6.06130 6.12285 6.25675 6.41300 6.59785 6.88706 6.92473 7.14160 8.37882 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.021087 B = 0.003943 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.497593 B = 7099.399125 C = 8278.665121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.112 4.112 4 C -0.099 4.099 5 C -0.131 4.131 6 C -0.117 4.117 7 C -0.152 4.152 8 C 0.127 3.873 9 N -0.656 5.656 10 C 0.559 3.441 11 O -0.563 6.563 12 C -0.147 4.147 13 C -0.184 4.184 14 C -0.101 4.101 15 C -0.198 4.198 16 C 0.061 3.939 17 C -0.501 4.501 18 H 0.083 0.917 19 C 0.023 3.977 20 N -0.845 5.845 21 Si 0.990 3.010 22 H -0.258 1.258 23 H -0.275 1.275 24 H -0.255 1.255 25 C -0.116 4.116 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.420 0.580 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.114 0.886 39 H 0.282 0.718 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.197 -4.361 -15.879 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.114 4.114 4 C -0.117 4.117 5 C -0.150 4.150 6 C -0.135 4.135 7 C -0.172 4.172 8 C 0.033 3.967 9 N -0.303 5.303 10 C 0.351 3.649 11 O -0.442 6.442 12 C -0.150 4.150 13 C -0.203 4.203 14 C -0.119 4.119 15 C -0.217 4.217 16 C 0.059 3.941 17 C -0.532 4.532 18 H 0.101 0.899 19 C -0.189 4.189 20 N -0.472 5.472 21 Si 0.810 3.190 22 H -0.183 1.183 23 H -0.200 1.200 24 H -0.179 1.179 25 C -0.136 4.136 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.177 0.823 32 H 0.172 0.828 33 H 0.153 0.847 34 H 0.121 0.879 35 H 0.260 0.740 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.132 0.868 39 H 0.093 0.907 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.562 -3.557 -15.875 17.194 hybrid contribution 0.332 0.538 1.233 1.386 sum -5.230 -3.019 -14.642 15.839 Atomic orbital electron populations 1.21775 0.93496 1.02968 1.02082 1.20573 0.97085 0.90890 1.03784 1.20027 1.02723 0.97280 0.91417 1.21241 0.97961 0.95123 0.97399 1.21463 1.00101 0.95125 0.98288 1.21258 0.99666 1.00762 0.91825 1.21321 1.02416 0.94148 0.99338 1.17934 1.01278 0.91951 0.85515 1.43311 1.35193 1.45344 1.06403 1.18937 0.80109 0.81634 0.84229 1.90684 1.34176 1.33972 1.85410 1.19723 1.01893 1.01036 0.92396 1.20922 1.00521 0.99535 0.99333 1.20959 0.99466 0.99405 0.92050 1.21601 0.98196 1.03239 0.98712 1.17986 0.91913 0.91770 0.92409 1.19812 1.32726 0.95128 1.05484 0.89854 1.26858 0.94340 0.95721 1.01987 1.69868 1.38475 1.03046 1.35841 0.85134 0.79039 0.77723 0.77078 1.18272 1.19967 1.17917 1.21729 0.99921 1.00911 0.91067 0.91575 0.90372 0.93823 0.88469 0.92027 0.82350 0.82806 0.84696 0.87861 0.74027 0.84688 0.83818 0.86791 0.90732 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.82 71.98 0.71 -1.52 16 2 C -0.09 -1.60 5.47 29.85 0.16 -1.43 16 3 C -0.11 -2.76 5.15 -19.74 -0.10 -2.86 16 4 C -0.10 -1.99 9.67 22.25 0.22 -1.77 16 5 C -0.13 -2.75 10.04 22.29 0.22 -2.53 16 6 C -0.12 -3.18 10.04 22.25 0.22 -2.96 16 7 C -0.15 -5.39 8.70 22.40 0.19 -5.19 16 8 C 0.13 4.17 6.29 38.18 0.24 4.41 16 9 N -0.66 -22.81 4.73 -306.08 -1.45 -24.26 16 10 C 0.56 25.43 7.62 86.79 0.66 26.09 16 11 O -0.56 -29.91 13.74 -3.91 -0.05 -29.96 16 12 C -0.15 -7.00 5.87 -20.14 -0.12 -7.12 16 13 C -0.18 -7.09 9.55 22.70 0.22 -6.87 16 14 C -0.10 -3.86 10.01 22.18 0.22 -3.64 16 15 C -0.20 -9.02 9.78 22.77 0.22 -8.80 16 16 C 0.06 3.31 5.55 -21.32 -0.12 3.20 16 17 C -0.50 -27.37 9.04 23.47 0.21 -27.16 16 18 H 0.08 4.27 7.85 -2.91 -0.02 4.25 16 19 C 0.02 1.21 5.42 85.25 0.46 1.67 16 20 N -0.84 -48.03 10.60 21.82 0.23 -47.80 16 21 Si 0.99 40.22 29.56 68.60 2.03 42.25 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 25 C -0.12 -6.46 8.21 23.01 0.19 -6.27 16 26 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.04 0.75 7.29 -2.39 -0.02 0.73 16 29 H 0.10 1.37 8.05 -2.39 -0.02 1.35 16 30 H 0.06 1.30 7.43 -2.38 -0.02 1.28 16 31 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 32 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.10 4.41 6.19 -2.91 -0.02 4.39 16 35 H 0.42 11.87 5.06 -92.71 -0.47 11.40 16 36 H 0.14 3.93 6.39 -2.91 -0.02 3.92 16 37 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 38 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 39 H 0.28 14.94 8.30 -92.70 -0.77 14.17 16 40 H 0.11 6.79 5.72 -2.91 -0.02 6.78 16 Total: -1.00 -70.24 335.03 5.17 -65.07 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: 0.60 Total: 37.44 kcal Atomic # 6 Polarization: -46.56 SS G_CDS: 3.82 Total: -42.75 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -1.22 Total: -72.05 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.05 Total: -29.96 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -70.24 5.17 -65.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042219556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.850 kcal (2) G-P(sol) polarization free energy of solvation -70.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds