Wall clock time and date at job start Tue Mar 31 2020 08:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47662 * 2 1 4 4 N 1.46492 * 109.47359 * 120.00454 * 2 1 3 5 5 C 1.46505 * 119.99905 * 299.99603 * 4 2 1 6 6 C 1.50697 * 109.47129 * 269.99933 * 5 4 2 7 7 H 1.08004 * 120.00054 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00029 * 179.97438 * 6 5 4 9 9 N 1.31507 * 119.99774 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99836 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46872 * 90.00416 * 10 8 6 12 12 H 1.48508 * 109.46787 * 209.99857 * 10 8 6 13 13 H 1.48499 * 109.47503 * 329.99823 * 10 8 6 14 14 C 1.34780 * 120.00506 * 119.99453 * 4 2 1 15 15 O 1.21281 * 120.00434 * 180.02562 * 14 4 2 16 16 C 1.50703 * 119.99575 * 0.02562 * 14 4 2 17 17 C 1.52996 * 109.47094 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.47210 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47116 * 179.97438 * 18 17 16 20 20 C 1.33391 * 125.19937 * 90.00083 * 19 18 17 21 21 C 1.38423 * 114.92045 * 179.97438 * 20 19 18 22 22 C 1.33390 * 114.91979 * 359.97438 * 21 20 19 23 23 S 1.75878 * 125.20693 * 269.69344 * 19 18 17 24 24 H 1.09007 * 109.46624 * 299.99561 * 1 2 3 25 25 H 1.08998 * 109.47304 * 59.99522 * 1 2 3 26 26 H 1.08998 * 109.47419 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46761 * 240.00198 * 2 1 3 28 28 H 1.08995 * 109.47736 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47151 * 300.00572 * 3 2 1 30 30 H 1.09003 * 109.47104 * 59.99852 * 3 2 1 31 31 H 1.08995 * 109.46831 * 29.99912 * 5 4 2 32 32 H 1.09004 * 109.47224 * 150.00190 * 5 4 2 33 33 H 0.96999 * 119.99994 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.47561 * 59.99923 * 16 14 4 35 35 H 1.09000 * 109.46976 * 299.99617 * 16 14 4 36 36 H 1.09000 * 109.47531 * 59.99538 * 17 16 14 37 37 H 1.09008 * 109.47250 * 300.00113 * 17 16 14 38 38 H 1.09000 * 109.46884 * 60.00289 * 18 17 16 39 39 H 1.09000 * 109.46955 * 299.99604 * 18 17 16 40 40 H 1.07995 * 122.54106 * 359.95411 * 20 19 18 41 41 H 1.08001 * 122.53959 * 180.02562 * 21 20 19 42 42 H 1.07998 * 125.20163 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.6645 -0.1902 2.5267 6 6 2.7033 0.8017 2.9829 7 1 3.5433 1.0355 2.3456 8 6 2.5814 1.4106 4.2140 9 7 1.5588 1.1255 4.9901 10 14 3.8694 2.6395 4.7797 11 1 3.4773 4.0037 4.3433 12 1 3.9708 2.6037 6.2609 13 1 5.1839 2.2881 4.1849 14 6 2.7932 -1.7865 1.0724 15 8 3.1971 -2.3586 2.0626 16 6 3.1576 -2.3010 -0.2964 17 6 4.0365 -3.5455 -0.1562 18 6 4.4059 -4.0682 -1.5458 19 6 5.2722 -5.2937 -1.4076 20 6 4.8241 -6.5481 -1.3371 21 6 5.8087 -7.5130 -1.2127 22 6 7.0564 -7.0423 -1.1828 23 16 7.0289 -5.2892 -1.3223 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 0.6906 0.2973 2.4843 32 1 1.6239 -1.0227 3.2291 33 1 1.4728 1.5541 5.8560 34 1 3.7028 -1.5303 -0.8411 35 1 2.2494 -2.5578 -0.8417 36 1 3.4909 -4.3162 0.3884 37 1 4.9448 -3.2893 0.3894 38 1 4.9515 -3.2977 -2.0906 39 1 3.4975 -4.3246 -2.0909 40 1 3.7728 -6.7923 -1.3738 41 1 5.5838 -8.5673 -1.1459 42 1 7.9475 -7.6457 -1.0911 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:49 Heat of formation + Delta-G solvation = -23.523945 kcal Electronic energy + Delta-G solvation = -21319.842397 eV Core-core repulsion = 18197.963181 eV Total energy + Delta-G solvation = -3121.879216 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.25023 -38.06207 -36.03050 -34.59010 -32.79809 -30.80523 -30.47537 -27.77125 -26.74395 -26.22647 -23.82519 -22.67832 -21.55066 -20.93989 -19.34251 -17.97620 -17.19721 -16.44511 -16.41052 -15.66739 -15.32755 -15.02560 -14.26333 -13.96234 -13.63929 -13.46020 -13.28221 -13.00648 -12.80407 -12.57462 -12.34558 -12.15122 -11.84885 -11.64919 -11.53713 -11.45635 -11.38343 -11.06565 -10.89939 -10.85746 -10.80160 -10.53997 -10.50385 -10.33531 -9.97761 -9.50774 -8.83898 -8.68865 -8.56345 -8.39109 -7.59524 -6.00389 -4.03455 0.91070 1.54743 1.92019 2.65311 3.31363 3.38470 3.41911 3.51317 3.96309 4.47356 4.64688 4.93388 4.99155 5.01230 5.22818 5.28610 5.33498 5.41904 5.45513 5.53200 5.61903 5.64162 5.67633 5.73156 5.80064 5.99891 6.02880 6.17860 6.19561 6.26738 6.30118 6.38353 6.41336 6.48462 6.61886 6.97879 7.16348 7.51586 7.62767 7.96929 8.29645 8.51346 8.95973 9.17473 9.60667 11.07774 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.003349 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.889537 B = 8358.351669 C = 9136.254013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.595 5.595 5 C 0.246 3.754 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.059 3.941 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.503 3.497 15 O -0.543 6.543 16 C -0.140 4.140 17 C -0.097 4.097 18 C -0.051 4.051 19 C -0.160 4.160 20 C -0.147 4.147 21 C -0.132 4.132 22 C -0.223 4.223 23 S 0.094 5.906 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.199 -10.803 -17.392 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.215 4.215 4 N -0.327 5.327 5 C 0.127 3.873 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.290 3.710 15 O -0.420 6.420 16 C -0.181 4.181 17 C -0.136 4.136 18 C -0.090 4.090 19 C -0.278 4.278 20 C -0.177 4.177 21 C -0.162 4.162 22 C -0.358 4.358 23 S 0.358 5.642 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.445 -9.945 -16.701 20.186 hybrid contribution -0.357 -0.362 0.462 0.688 sum 5.088 -10.307 -16.239 19.895 Atomic orbital electron populations 1.22160 0.95719 1.01727 1.02398 1.20981 0.94002 0.94090 0.88061 1.22141 1.01325 0.95804 1.02249 1.48345 1.49282 1.26531 1.08531 1.19212 0.95799 0.94918 0.77408 1.21449 1.08861 1.23291 1.02060 0.92426 1.24930 0.95761 0.97169 0.96366 1.69930 1.29601 1.43289 1.10717 0.86555 0.82075 0.81228 0.77915 1.20722 1.21175 1.19945 1.20350 0.79137 0.80920 0.90643 1.90670 1.53339 1.58176 1.39863 1.21707 1.00970 0.98665 0.96741 1.21334 1.00562 0.96698 0.94974 1.20252 0.97714 0.92545 0.98535 1.24569 0.96363 0.98908 1.07926 1.20127 1.00957 0.91461 1.05175 1.20163 0.91851 1.00838 1.03387 1.25573 1.01522 0.97309 1.11425 1.84354 1.03529 1.04089 1.72264 0.91343 0.92343 0.92961 0.90691 0.92788 0.93337 0.90104 0.94908 0.94178 0.92839 0.89578 0.89680 0.90889 0.90951 0.90744 0.89923 0.84338 0.84509 0.82161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.17 37.16 0.34 -2.01 16 2 C 0.13 2.14 3.17 -67.94 -0.22 1.92 16 3 C -0.16 -2.57 8.47 37.16 0.31 -2.26 16 4 N -0.59 -12.41 2.39 -167.47 -0.40 -12.81 16 5 C 0.25 6.36 4.60 -5.19 -0.02 6.34 16 6 C -0.52 -14.46 7.83 -34.44 -0.27 -14.73 16 7 H 0.06 1.61 7.63 -52.48 -0.40 1.21 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 10 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.50 10.37 7.67 -10.98 -0.08 10.29 16 15 O -0.54 -13.75 15.56 5.56 0.09 -13.67 16 16 C -0.14 -2.00 4.01 -27.88 -0.11 -2.11 16 17 C -0.10 -1.34 4.49 -26.73 -0.12 -1.46 16 18 C -0.05 -0.54 5.71 -27.88 -0.16 -0.70 16 19 C -0.16 -1.81 5.76 -36.00 -0.21 -2.02 16 20 C -0.15 -1.57 10.05 -41.21 -0.41 -1.99 16 21 C -0.13 -1.30 10.18 -41.21 -0.42 -1.72 16 22 C -0.22 -2.19 11.23 29.04 0.33 -1.86 16 23 S 0.09 1.03 23.33 -107.50 -2.51 -1.48 16 24 H 0.07 1.14 6.66 -51.93 -0.35 0.80 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.97 5.77 -51.93 -0.30 0.68 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 31 H 0.03 0.86 6.43 -51.93 -0.33 0.53 16 32 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.09 1.08 7.79 -51.93 -0.40 0.68 16 35 H 0.08 0.99 7.79 -51.93 -0.40 0.59 16 36 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 37 H 0.07 1.15 8.10 -51.92 -0.42 0.73 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 357.15 15.07 5.38 5.38 Total: -1.00 -32.85 357.15 -9.58 -42.43 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.71 Total: -0.15 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -1.14 Total: -10.71 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.34 Total: -38.73 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.48 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.85 -9.58 -42.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.905 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds